Non-Coding RNA Search

Ss1.1-Pig4-TMW8047I24.3

Sequence:


               
               CTCAGACTCACAGTTCCTGGTGCTAATGAACCGCGTCCTGGCACTGATTGGGGCTGGCTT
CTACTGCATCTTATGCAAGCAGCCCCGGGATGGGGCACCCATGTACCGGTACTCCTTTGC
CAGCCTGTCAAATGTGCTCAGCAGCTGGTGCCAATATGAAGCTCTCAAGTTTGTCAGCTT
CCCCACGCAGGTGCTGGCCAAGGCCTCCAAGGTGATCCCTGTCATGCTGATGGGAAAGTT
GGTGTCTCGGCGCAGCTATGAGCACTGGGAGTATCTGACAGCTGGCCTTATCTCCATCGG
GGTTAGCATGTTTCTGCTGTCCAGCGGACCGGAGCCCCACAGCTCCCCGGCCACCACACT
CTCAGGCCTCATCCTGTTGGCTGGATACATTGCCTTTGACAGCTTCACCTCCAACTGGCA
GGATGCCCTGTTCGCGTATAAGATGTCATCGGTGCAGATGATGTTTGGGGTCAACTTCTT
CTCCTGCCTCTTCACAGTGGGCTCCCTGCTAGAGCAGGGGGCCCTCCTGGAGGGGGTCCG
CTTCATGGGCCGGCACAGCGAGTTTGCTGCGCACACTCTGCTGTTGTCCATCTGCTCCGC
ATGTGGCCAGCTCTTCATCTTCTATACCATTGGGCAGTTTGGGGCTGCCGTCTTCACCAT
CATCATGACCCTCCGCCAGGCCTTTGCCATCCTCCTCTCCTGCCTCCTCTATGGCCACAC
TATCACTGTGGTGGGGGGCCTGGGGGTGGCTGTGGTCTTTGCTGCCCTCCTGCTCCGAGT
CTATGCCCGGGGCCGTCTAAAGCAGCGGGGAAAGAAGGCTGTGCCTGTTGAGTCGTCTGT
GCAGAAGGTGTGAGGGACCTGAAGGATGAAGTGAATAGGACCCACTGTACCAGTTTCCTC
TCCTACTGTAACTTCTCGGAGGTGGCTGGCTCCAGGGCAAAGTGCAGGTTTCTCAGTATT
ACAAACCAGCATTGGGGGCAGGGAGCCCCGAGGCAGGCAGCCTTCCCCTTTGCCTTAGGC
ACCCCTTCCTCTAGAGGGCAGCATTCTGGCAGTCCCCAGGTGAAGGTGAGGGGGGAGGTG
TGGCTTGTGAGGAAGCAGCACTTAACAGATCCCCTCCCACCATTGGCCCCTACCGTGAAT
ATCTACCCTCTCAGACTCAAGAGACCTGCACTTCATCTCTGGTGAGAGAAGCACAAGCGC
GGCACAGGCTCCACATGCCATTTTCCCAGGAGAGGAAGTGGAAGGTGCTGTGCCGTGGGA
GGGGCTTGGCTGTCCTGCCCAGCACCACCTCCTCCCTCTGTGCTCCTGGATCCCTAGGCT
CTCCTTGAGCCTGTTGCAGGTTTTGGTACTTCGGAAATGTAACTTTTGCTCTTATAATTT
TATTTTATTAAATTAAATTGCTGCAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCAGACTCACAGTTCCTGGTGCTAATGAACCGCGTCCTGGCACTGATTGGGGCTGGCTT
CTACTGCATCTTATGCAAGCAGCCCCGGGATGGGGCACCCATGTACCGGTACTCCTTTGC
CAGCCTGTCAAATGTGCTCAGCAGCTGGTGCCAATATGAAGCTCTCAAGTTTGTCAGCTT
CCCCACGCAGGTGCTGGCCAAGGCCTCCAAGGTGATCCCTGTCATGCTGATGGGAAAGTT
GGTGTCTCGGCGCAGCTATGAGCACTGGGAGTATCTGACAGCTGGCCTTATCTCCATCGG
GGTTAGCATGTTTCTGCTGTCCAGCGGACCGGAGCCCCACAGCTCCCCGGCCACCACACT
CTCAGGCCTCATCCTGTTGGCTGGATACATTGCCTTTGACAGCTTCACCTCCAACTGGCA
GGATGCCCTGTTCGCGTATAAGATGTCATCGGTGCAGATGATGTTTGGGGTCAACTTCTT
CTCCTGCCTCTTCACAGTGGGCTCCCTGCTAGAGCAGGGGGCCCTCCTGGAGGGGGTCCG
CTTCATGGGCCGGCACAGCGAGTTTGCTGCGCACACTCTGCTGTTGTCCATCTGCTCCGC
ATGTGGCCAGCTCTTCATCTTCTATACCATTGGGCAGTTTGGGGCTGCCGTCTTCACCAT
CATCATGACCCTCCGCCAGGCCTTTGCCATCCTCCTCTCCTGCCTCCTCTATGGCCACAC
TATCACTGTGGTGGGGGGCCTGGGGGTGGCTGTGGTCTTTGCTGCCCTCCTGCTCCGAGT
CTATGCCCGGGGCCGTCTAAAGCAGCGGGGAAAGAAGGCTGTGCCTGTTGAGTCGTCTGT
GCAGAAGGTGTGAGGGACCTGAAGGATGAAGTGAATAGGACCCACTGTACCAGTTTCCTC
TCCTACTGTAACTTCTCGGAGGTGGCTGGCTCCAGGGCAAAGTGCAGGTTTCTCAGTATT
ACAAACCAGCATTGGGGGCAGGGAGCCCCGAGGCAGGCAGCCTTCCCCTTTGCCTTAGGC
ACCCCTTCCTCTAGAGGGCAGCATTCTGGCAGTCCCCAGGTGAAGGTGAGGGGGGAGGTG
TGGCTTGTGAGGAAGCAGCACTTAACAGATCCCCTCCCACCATTGGCCCCTACCGTGAAT
ATCTACCCTCTCAGACTCAAGAGACCTGCACTTCATCTCTGGTGAGAGAAGCACAAGCGC
GGCACAGGCTCCACATGCCATTTTCCCAGGAGAGGAAGTGGAAGGTGCTGTGCCGTGGGA
GGGGCTTGGCTGTCCTGCCCAGCACCACCTCCTCCCTCTGTGCTCCTGGATCCCTAGGCT
CTCCTTGAGCCTGTTGCAGGTTTTGGTACTTCGGAAATGTAACTTTTGCTCTTATAATTT
TATTTTATTAAATTAAATTGCTGCAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|16877136|gb|AAH16839.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|16877136|gb|AAH16839.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               40-719, + strand, RNAz p=0.999324
               

               
               1201-1392, - strand, RNAz p=0.999869

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-719, + strand, RNAz p=0.999324
               

               
               1201-1392, - strand, RNAz p=0.999869

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1043, gnl|bosTau2|chr23 (17547929-17548971)
               


               
               1123-1405, gnl|bosTau2|chr23 (17549345-17549614)
               

               
               1123-1405, gnl|Hg17|chr6 (44330094-44329821)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1043, gnl|bosTau2|chr23 (17547929-17548971)
               


               
               1123-1405, gnl|bosTau2|chr23 (17549345-17549614)
               

               
               1123-1405, gnl|Hg17|chr6 (44330094-44329821)

Expressed library(ies): 17 entry(ies)

More info

Expressed library(ies): 17 entry(ies)

Help | Less info


               
               fli (0.405762)
               

               
               cga (0.279096)
               

               
               fce (0.271592)
               

               
               ute (0.265569)
               

               
               cov (0.264306)
               

               
               jej (0.197844)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cli (0.152812)
               

               
               lun (0.150489)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fli (0.405762)
               

               
               cga (0.279096)
               

               
               fce (0.271592)
               

               
               ute (0.265569)
               

               
               cov (0.264306)
               

               
               jej (0.197844)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cli (0.152812)
               

               
               lun (0.150489)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

	40-719, + strand, RNAz p=0.999324
	1201-1392, - strand, RNAz p=0.999869

	1-1043, gnl\|bosTau2\|chr23 (17547929-17548971)

	1123-1405, gnl\|bosTau2\|chr23 (17549345-17549614)
	1123-1405, gnl\|Hg17\|chr6 (44330094-44329821)

	fli (0.405762)
	cga (0.279096)
	fce (0.271592)
	ute (0.265569)
	cov (0.264306)
	jej (0.197844)
	fbs (0.175346)
	duo (0.172801)
	eye (0.170503)
	cli (0.152812)
	lun (0.150489)
	hlv (0.139256)
	nca (0.136874)
	eep (0.122564)
	pgl (0.118483)
	med (0.116252)
	eje (0.0988338)