Ss1.1-Pig4-TMW8047J03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTCTGACAGCGCTGAGGTGCGCCGAGCAGGAGCGGGGAACAAAGGAGCGGAGTGGGGAG GGGAGCGAGTTGGGCGAGGGAGAGACCCCGGCCGGCTGCCAGAAGATCCCGGCCGGAGGA AGCCCAAGTGTCACTTGAATTCCACCCAAGGAGCGGGCGCCTGGGATCGGAGCGCCTTGT TTAGCAATAACGGCTGGAGCGCGTCCTACAAGTTACGGGAGAGTCGGCCAGGAAGGAGGA CAATCGCTTGGCCCCTCCACCCCCGCTCCTGGCCCCTCGAGACCCCAGCGCTGCCTCGCG CTGGAAGGGGAGCTCCAGAATGAAAAGCAAGAAAGGTGTTGTTGCCGTGTCTGGCAGTGA GACAGAGGATGATGACAGCATGGACAGCCCCCTGGACCTCTCCTCGTCTGCCGGCAGTTC AGGCAAGAGAAGGCGAAGGGGCAACCTGCCCAAGGAATCCGTTCAGATCCTCCGCGATTG GCTGTATGAACACCGATACAATGCCTACCCCTCGGAGCAAGAAAAAGCTACTGTCCCAGC AGACACACCTCTCTACACTACAGGTCTGTAACTGGTTCATCAATGCCCGACGCAGGCTCC TCCCGGACATGCTGAGAAAGGATGGCAAAGATCCAAATCAGTTCACAATTTCCCGACGTG GGGCCAAGATTTCTGAAGCCGGGTCTGTAGAGTCGGCAATGGGCATCAAAAACTTCATGC CGGCTTTAGAGGAGAGCCCATTTCATTCCTGTACAGCTGGACCCAACCCAGCCCTTGGGA GGCCACTGTCTCCTAAGCCATCCTCCCCAGGATCAGTTTTGGCTCGTCCGTCAGTGATCT GTCATACCACTGTGACTGCATTGAAAGATGTGCCTTTCTCTCTCTGCCAGCCAGTTGGTG TGGGACAGAACACAGATATACAGCAGATAGCAACCAGCAGCTTTACAGACACCTCCCTCA TGTACCCAGAGGACACATGTAAATCTGGACCGAGTGCAAATACACAGAGTGGTCTCTTCA ACACTCCCCCCCCTACTCCACCGGACCTCAACCAAGATTTTAGTGGATTTCAGCTTCTGG TAGATGTTGCACTCAAACGGGCTGCAGAGATGGAGCTTCAGGCAAAACTGACGGCTTAAC CCCTTTTTCAAGCAAAACCTCAAAAAGGTTATGATTGCCGGGGTGATGGCAAGAGATAGA TTGCATTATTTTATATTTTTTTATTAATATTTGCACATGGGTTGCTAAAGTGAAGCTTCC TGTTACTGAGATGTCTTCAATGGAATCCAGTCATTCCAAGAACTATAAACTCAAAGCTAC TGTAGAAACAAAGGGTTTTCTTTTTTAAAATGTTTCTTGGTAGATTATTCATAATGTGAG ATGGTTCCCAAGATCATGTGATTTTTTTTTTTTTCCCCTTCCCCTCCCCTTTTTTTGTTG GTGTTTTTTCCAGACTGTGCAATAATTAGAGAACCTATAGCATCTTCTCATTCCCACGTG GAACAGGATGCCCACATACTGTCTAATTAATAAATTTCCAATTTTTTTCAAACAAGTATG AATCTAGTTGATTGATGCATTTTTTTTTCATGACATAATAAAGTATTTTCTTTAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTCTGACAGCGCTGAGGTGCGCCGAGCAGGAGCGGGGAACAAAGGAGCGGAGTGGGGAG GGGAGCGAGTTGGGCGAGGGAGAGACCCCGGCCGGCTGCCAGAAGATCCCGGCCGGAGGA AGCCCAAGTGTCACTTGAATTCCACCCAAGGAGCGGGCGCCTGGGATCGGAGCGCCTTGT TTAGCAATAACGGCTGGAGCGCGTCCTACAAGTTACGGGAGAGTCGGCCAGGAAGGAGGA CAATCGCTTGGCCCCTCCACCCCCGCTCCTGGCCCCTCGAGACCCCAGCGCTGCCTCGCG CTGGAAGGGGAGCTCCAGAATGAAAAGCAAGAAAGGTGTTGTTGCCGTGTCTGGCAGTGA GACAGAGGATGATGACAGCATGGACAGCCCCCTGGACCTCTCCTCGTCTGCCGGCAGTTC AGGCAAGAGAAGGCGAAGGGGCAACCTGCCCAAGGAATCCGTTCAGATCCTCCGCGATTG GCTGTATGAACACCGATACAATGCCTACCCCTCGGAGCAAGAAAAAGCTACTGTCCCAGC AGACACACCTCTCTACACTACAGGTCTGTAACTGGTTCATCAATGCCCGACGCAGGCTCC TCCCGGACATGCTGAGAAAGGATGGCAAAGATCCAAATCAGTTCACAATTTCCCGACGTG GGGCCAAGATTTCTGAAGCCGGGTCTGTAGAGTCGGCAATGGGCATCAAAAACTTCATGC CGGCTTTAGAGGAGAGCCCATTTCATTCCTGTACAGCTGGACCCAACCCAGCCCTTGGGA GGCCACTGTCTCCTAAGCCATCCTCCCCAGGATCAGTTTTGGCTCGTCCGTCAGTGATCT GTCATACCACTGTGACTGCATTGAAAGATGTGCCTTTCTCTCTCTGCCAGCCAGTTGGTG TGGGACAGAACACAGATATACAGCAGATAGCAACCAGCAGCTTTACAGACACCTCCCTCA TGTACCCAGAGGACACATGTAAATCTGGACCGAGTGCAAATACACAGAGTGGTCTCTTCA ACACTCCCCCCCCTACTCCACCGGACCTCAACCAAGATTTTAGTGGATTTCAGCTTCTGG TAGATGTTGCACTCAAACGGGCTGCAGAGATGGAGCTTCAGGCAAAACTGACGGCTTAAC CCCTTTTTCAAGCAAAACCTCAAAAAGGTTATGATTGCCGGGGTGATGGCAAGAGATAGA TTGCATTATTTTATATTTTTTTATTAATATTTGCACATGGGTTGCTAAAGTGAAGCTTCC TGTTACTGAGATGTCTTCAATGGAATCCAGTCATTCCAAGAACTATAAACTCAAAGCTAC TGTAGAAACAAAGGGTTTTCTTTTTTAAAATGTTTCTTGGTAGATTATTCATAATGTGAG ATGGTTCCCAAGATCATGTGATTTTTTTTTTTTTCCCCTTCCCCTCCCCTTTTTTTGTTG GTGTTTTTTCCAGACTGTGCAATAATTAGAGAACCTATAGCATCTTCTCATTCCCACGTG GAACAGGATGCCCACATACTGTCTAATTAATAAATTTCCAATTTTTTTCAAACAAGTATG AATCTAGTTGATTGATGCATTTTTTTTTCATGACATAATAAAGTATTTTCTTTAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 40-159, - strand, RNAz p=0.70621 | |
| 703-862, - strand, RNAz p=0.994112 | |
| 1323-1440, - strand, RNAz p=0.920475 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 40-159, - strand, RNAz p=0.70621 | |
| 703-862, - strand, RNAz p=0.994112 | |
| 1323-1440, - strand, RNAz p=0.920475 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 1-337, gnl|bosTau2|chr24 (26636033-26635693) | |
| 1-337, gnl|Hg17|chr18 (3440170-3440505) | |
| 1-337, gnl|Mm7|chr17 (69130739-69130400) | |
| 545-1618, gnl|bosTau2|chr24 (26629165-26628071) | |
| 545-1618, gnl|Hg17|chr18 (3447343-3448409) | |
| 545-1618, gnl|Mm7|chr17 (69124822-69123744) | |
| 556-668, gnl|bosTau2|chr13 (44726835-44726947) | |
| 556-668, gnl|canFam2|chr24 (28344051-28343878) | |
| 556-668, gnl|canFam2|chr24 (28343858-28344079) | |
| 556-668, gnl|danRer3|chrNA (124717243-124717070) | |
| 556-668, gnl|danRer3|chrNA (124717053-124717241) | |
| 556-668, gnl|dasNov1|scaffold_95164 (2633-2452) | |
| 556-668, gnl|dasNov1|scaffold_95164 (2440-2661) | |
| 556-668, gnl|echTel1|scaffold_194970 (18738-18557) | |
| 556-668, gnl|echTel1|scaffold_194970 (18545-18766) | |
| 556-668, gnl|fr1|chrUn (151649155-151648968) | |
| 556-668, gnl|fr1|chrUn (192009763-192009981) | |
| 556-668, gnl|galGal2|chr20 (372050-372246) | |
| 556-668, gnl|galGal2|chr20 (372247-372014) | |
| 556-668, gnl|hg17|chr1 (240884663-240884829) | |
| 556-668, gnl|hg17|chr20 (34652708-34652929) | |
| 556-668, gnl|Hg17|chr20 (34652719-34652831) | |
| 556-668, gnl|loxAfr1|scaffold_40321 (4920-4740) | |
| 556-668, gnl|loxAfr1|scaffold_40321 (4727-4948) | |
| 556-668, gnl|mm7|chr2 (156594000-156594221) | |
| 556-668, gnl|Mm7|chr2 (156594011-156594123) | |
| 556-668, gnl|mm7|chr4 (88621195-88621022) | |
| 556-668, gnl|monDom2|scaffold_6 (10384001-10384185) | |
| 556-668, gnl|monDom2|scaffold_6 (10384186-10383963) | |
| 556-668, gnl|oryCun1|scaffold_215277 (9193-9374) | |
| 556-668, gnl|oryCun1|scaffold_215277 (9386-9165) | |
| 556-668, gnl|panTro1|chr1 (224904670-224904836) | |
| 556-668, gnl|panTro1|chr21 (36889153-36889374) | |
| 556-668, gnl|rheMac2|chr1 (212687704-212687538) | |
| 556-668, gnl|rheMac2|chr10 (27892501-27892280) | |
| 556-668, gnl|rn3|chr17 (54812636-54812455) | |
| 556-668, gnl|rn3|chr3 (147157719-147157940) | |
| 556-668, gnl|tetNig1|chr6 (3873110-3872923) | |
| 556-668, gnl|tetNig1|chrUn_random (43288367-43288578) | |
| 556-668, gnl|xenTro1|scaffold_637 (100859-100645) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-337, gnl|bosTau2|chr24 (26636033-26635693) | |
| 1-337, gnl|Hg17|chr18 (3440170-3440505) | |
| 1-337, gnl|Mm7|chr17 (69130739-69130400) | |
| 545-1618, gnl|bosTau2|chr24 (26629165-26628071) | |
| 545-1618, gnl|Hg17|chr18 (3447343-3448409) | |
| 545-1618, gnl|Mm7|chr17 (69124822-69123744) | |
| 556-668, gnl|bosTau2|chr13 (44726835-44726947) | |
| 556-668, gnl|canFam2|chr24 (28344051-28343878) | |
| 556-668, gnl|canFam2|chr24 (28343858-28344079) | |
| 556-668, gnl|danRer3|chrNA (124717243-124717070) | |
| 556-668, gnl|danRer3|chrNA (124717053-124717241) | |
| 556-668, gnl|dasNov1|scaffold_95164 (2633-2452) | |
| 556-668, gnl|dasNov1|scaffold_95164 (2440-2661) | |
| 556-668, gnl|echTel1|scaffold_194970 (18738-18557) | |
| 556-668, gnl|echTel1|scaffold_194970 (18545-18766) | |
| 556-668, gnl|fr1|chrUn (151649155-151648968) | |
| 556-668, gnl|fr1|chrUn (192009763-192009981) | |
| 556-668, gnl|galGal2|chr20 (372050-372246) | |
| 556-668, gnl|galGal2|chr20 (372247-372014) | |
| 556-668, gnl|hg17|chr1 (240884663-240884829) | |
| 556-668, gnl|hg17|chr20 (34652708-34652929) | |
| 556-668, gnl|Hg17|chr20 (34652719-34652831) | |
| 556-668, gnl|loxAfr1|scaffold_40321 (4920-4740) | |
| 556-668, gnl|loxAfr1|scaffold_40321 (4727-4948) | |
| 556-668, gnl|mm7|chr2 (156594000-156594221) | |
| 556-668, gnl|Mm7|chr2 (156594011-156594123) | |
| 556-668, gnl|mm7|chr4 (88621195-88621022) | |
| 556-668, gnl|monDom2|scaffold_6 (10384001-10384185) | |
| 556-668, gnl|monDom2|scaffold_6 (10384186-10383963) | |
| 556-668, gnl|oryCun1|scaffold_215277 (9193-9374) | |
| 556-668, gnl|oryCun1|scaffold_215277 (9386-9165) | |
| 556-668, gnl|panTro1|chr1 (224904670-224904836) | |
| 556-668, gnl|panTro1|chr21 (36889153-36889374) | |
| 556-668, gnl|rheMac2|chr1 (212687704-212687538) | |
| 556-668, gnl|rheMac2|chr10 (27892501-27892280) | |
| 556-668, gnl|rn3|chr17 (54812636-54812455) | |
| 556-668, gnl|rn3|chr3 (147157719-147157940) | |
| 556-668, gnl|tetNig1|chr6 (3873110-3872923) | |
| 556-668, gnl|tetNig1|chrUn_random (43288367-43288578) | |
| 556-668, gnl|xenTro1|scaffold_637 (100859-100645) |
| Expressed library(ies): 27 entry(ies) | More info |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
| cki (0.495704) | |
| aor (0.390549) | |
| nlu (0.383362) | |
| sug (0.381874) | |
| sag (0.36543) | |
| liv (0.292569) | |
| thg (0.253582) | |
| tra (0.246184) | |
| cly (0.241284) | |
| pan (0.23596) | |
| mas (0.210305) | |
| tes (0.207814) | |
| cmu (0.186393) | |
| ill (0.175593) | |
| nje (0.16592) | |
| cje (0.165235) | |
| csp (0.161186) | |
| lun (0.150489) | |
| isp (0.150376) | |
| spl (0.143184) | |
| ste (0.135208) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| cov (0.132153) | |
| ova (0.129132) | |
| med (0.116252) | |
| jej (0.0989218) |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cki (0.495704) | |
| aor (0.390549) | |
| nlu (0.383362) | |
| sug (0.381874) | |
| sag (0.36543) | |
| liv (0.292569) | |
| thg (0.253582) | |
| tra (0.246184) | |
| cly (0.241284) | |
| pan (0.23596) | |
| mas (0.210305) | |
| tes (0.207814) | |
| cmu (0.186393) | |
| ill (0.175593) | |
| nje (0.16592) | |
| cje (0.165235) | |
| csp (0.161186) | |
| lun (0.150489) | |
| isp (0.150376) | |
| spl (0.143184) | |
| ste (0.135208) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| cov (0.132153) | |
| ova (0.129132) | |
| med (0.116252) | |
| jej (0.0989218) |