Ss1.1-Pig4-TMW8047J11.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAACCAGCAGTGATCAGTGTGCTGTTCAGCTTTTCTACTCAGTGAGAAATATCTTCCATT TGTTCCATGATGTTGTACCAACATATCACAAGGAGAACCTTCAAAAACTGCCCCAGCTGG CTGCCATTCACCACAACAACTGCATGTATATTGCTCATCACTTGCTGACCCTCGGGCATC AGTTCAGATTACGTCTGGCCCCCATTCTATGTGATGGCACTGCTACTTTTGTGGATCTTG TACCTGGCTTCAGGAGACTTGGGACAGAGTGTTTTTTGGCCCAAATGCGGGCACAGAAAG GAGAACTGCTGGAAAGATTATCAAGTGCTAGAAACTTTTCCAACATGGACGATGAGGAGA ATTATTCTGCAGCGAGTAAAGCAGTCCGGCAGGTACTGCACCAACTAAAGAGACTTGGGA TCGTGTGGCAGGATGTCCTACCAGTAAATGTATATTGCAAGGCTATGGGGACTTTACTCA ATACAGCAATTTCTGAGATGATTGGCAGAATCACTGCCCTAGAGGACATCTCTACTGAAG ATGGTGATAGATTGTACTCCCTATGTAAAACAGTGATGGATGAAGGACCCCAAGTATTTG CACCTCTGTCTGAAGAAAGCAGGAACAGGAAATATCAAGAAGAGGTTCCAGTCTATGTGC CAAAATGGATGCCGTTCAAAGAATTGATGATAATGTTGCAAGCGAGTCTGCAAGAAATTG GGGATCGGTGGGCAGATGGAAAAGGGCCCTTGGCAGCTGCATTCTCTTCCAGTGAAGTGA AAGCTTTAATTCGTGCCTTGTTCCAGAACACAGAAAGAAGAGCAGCTGCCCTTGCTAAGA TTAAATAGCTCCATCTTCCTGAGAAAGCCATGTCTTGACCATGTGGAGTCCTCTCTTGAC ATAATTTTTCCTTTCAAGACTTGTTGGAATCACCCATTGGTCTTGGTGAACTAATGTCAT GCAAGTTTGGTTTCGCCTGGCCTGTGTGAGGCTTTGTGGAAGAACTGGGTGTTAAGATGT CACGTGAAGCACCTCAATTCGATGACCTTTTAGTCTCCCTCCCCTGATAAGAAACTGTCG GGCGACAGTATTTCATGTTGCTTCCCTCTGGGAACTTTATCCCTTGAAAATATAAGCCCT GGCCTTGGGTCAAGGAATCCAGGACATTCCACAAGTCGAGGTAAAGAATTTGTGAGCAAA TGGGAGTTATTTGGGAGGGTAAAGGAACCGTATTTGGTCTTGCAGGGATTAAGAAGCCTT CCTTTAATATTCTTTCCAATAAATAATGCTTTTCAGAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAACCAGCAGTGATCAGTGTGCTGTTCAGCTTTTCTACTCAGTGAGAAATATCTTCCATT TGTTCCATGATGTTGTACCAACATATCACAAGGAGAACCTTCAAAAACTGCCCCAGCTGG CTGCCATTCACCACAACAACTGCATGTATATTGCTCATCACTTGCTGACCCTCGGGCATC AGTTCAGATTACGTCTGGCCCCCATTCTATGTGATGGCACTGCTACTTTTGTGGATCTTG TACCTGGCTTCAGGAGACTTGGGACAGAGTGTTTTTTGGCCCAAATGCGGGCACAGAAAG GAGAACTGCTGGAAAGATTATCAAGTGCTAGAAACTTTTCCAACATGGACGATGAGGAGA ATTATTCTGCAGCGAGTAAAGCAGTCCGGCAGGTACTGCACCAACTAAAGAGACTTGGGA TCGTGTGGCAGGATGTCCTACCAGTAAATGTATATTGCAAGGCTATGGGGACTTTACTCA ATACAGCAATTTCTGAGATGATTGGCAGAATCACTGCCCTAGAGGACATCTCTACTGAAG ATGGTGATAGATTGTACTCCCTATGTAAAACAGTGATGGATGAAGGACCCCAAGTATTTG CACCTCTGTCTGAAGAAAGCAGGAACAGGAAATATCAAGAAGAGGTTCCAGTCTATGTGC CAAAATGGATGCCGTTCAAAGAATTGATGATAATGTTGCAAGCGAGTCTGCAAGAAATTG GGGATCGGTGGGCAGATGGAAAAGGGCCCTTGGCAGCTGCATTCTCTTCCAGTGAAGTGA AAGCTTTAATTCGTGCCTTGTTCCAGAACACAGAAAGAAGAGCAGCTGCCCTTGCTAAGA TTAAATAGCTCCATCTTCCTGAGAAAGCCATGTCTTGACCATGTGGAGTCCTCTCTTGAC ATAATTTTTCCTTTCAAGACTTGTTGGAATCACCCATTGGTCTTGGTGAACTAATGTCAT GCAAGTTTGGTTTCGCCTGGCCTGTGTGAGGCTTTGTGGAAGAACTGGGTGTTAAGATGT CACGTGAAGCACCTCAATTCGATGACCTTTTAGTCTCCCTCCCCTGATAAGAAACTGTCG GGCGACAGTATTTCATGTTGCTTCCCTCTGGGAACTTTATCCCTTGAAAATATAAGCCCT GGCCTTGGGTCAAGGAATCCAGGACATTCCACAAGTCGAGGTAAAGAATTTGTGAGCAAA TGGGAGTTATTTGGGAGGGTAAAGGAACCGTATTTGGTCTTGCAGGGATTAAGAAGCCTT CCTTTAATATTCTTTCCAATAAATAATGCTTTTCAGAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 385-525, - strand, RNAz p=0.962455 | |
| 385-494, - strand, RNAz p=0.904425 | |
| 727-845, - strand, RNAz p=0.985635 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 385-525, - strand, RNAz p=0.962455 | |
| 385-494, - strand, RNAz p=0.904425 | |
| 727-845, - strand, RNAz p=0.985635 |
| Aligned organism(s): 52 entry(ies) | More info |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
| 92-262, gnl|bosTau2|chr15 (10703549-10703379) | |
| 92-262, gnl|canFam2|chr5 (22529958-22529784) | |
| 92-262, gnl|danRer3|chr21 (16037844-16037676) | |
| 92-262, gnl|dasNov1|scaffold_64933 (1303-1468) | |
| 92-262, gnl|echTel1|scaffold_325345 (56748-56578) | |
| 92-262, gnl|fr1|chrUn (196267297-196267471) | |
| 92-262, gnl|galGal2|chr24 (5144996-5144822) | |
| 92-262, gnl|hg17|chr11 (113115142-113115316) | |
| 92-262, gnl|Hg17|chr11 (113115314-113115144) | |
| 92-262, gnl|mm7|chr9 (49045498-49045324) | |
| 92-262, gnl|Mm7|chr9 (49045324-49045494) | |
| 92-262, gnl|monDom2|scaffold_2 (127193828-127193654) | |
| 92-262, gnl|oryCun1|scaffold_215105 (6511-6337) | |
| 92-262, gnl|panTro1|chr9 (115117403-115117577) | |
| 92-262, gnl|rheMac2|chr14 (112214369-112214543) | |
| 92-262, gnl|rn3|chr8 (52355730-52355556) | |
| 92-262, gnl|tetNig1|chr7 (10207014-10207188) | |
| 92-262, gnl|xenTro1|scaffold_300 (612895-612721) | |
| 385-525, gnl|bosTau2|chr15 (10701777-10701637) | |
| 385-525, gnl|canFam2|chr5 (22531965-22531802) | |
| 385-525, gnl|danRer3|chr21 (16040237-16040094) | |
| 385-525, gnl|dasNov1|scaffold_89548 (35-198) | |
| 385-525, gnl|echTel1|scaffold_142325 (605-440) | |
| 385-525, gnl|fr1|chrUn (196266793-196266954) | |
| 385-525, gnl|galGal2|chr24 (5146276-5146116) | |
| 385-525, gnl|hg17|chr11 (113113499-113113661) | |
| 385-525, gnl|Hg17|chr11 (113113642-113113503) | |
| 385-525, gnl|mm7|chr9 (49047164-49047007) | |
| 385-525, gnl|Mm7|chr9 (49047023-49047158) | |
| 385-525, gnl|monDom2|scaffold_2 (127196556-127196398) | |
| 385-525, gnl|oryCun1|scaffold_215105 (8814-8651) | |
| 385-525, gnl|panTro1|chr9 (115115759-115115921) | |
| 385-525, gnl|rheMac2|chr14 (112212722-112212884) | |
| 385-525, gnl|rn3|chr8 (52357424-52357267) | |
| 385-525, gnl|tetNig1|chr7 (10206599-10206742) | |
| 385-525, gnl|xenTro1|scaffold_300 (615152-614994) | |
| 727-988, gnl|bosTau2|chr15 (10697879-10697619) | |
| 727-988, gnl|Hg17|chr11 (113109747-113109466) | |
| 727-988, gnl|Mm7|chr9 (49050319-49050608) | |
| 1152-1297, gnl|bosTau2|chr15 (10697501-10697354) | |
| 1152-1297, gnl|canFam2|chr5 (22535947-22535786) | |
| 1152-1297, gnl|dasNov1|scaffold_10172 (7009-7170) | |
| 1152-1297, gnl|echTel1|scaffold_325345 (62242-62076) | |
| 1152-1297, gnl|hg17|chr11 (113109070-113109251) | |
| 1152-1297, gnl|Hg17|chr11 (113109286-113109120) | |
| 1152-1297, gnl|mm7|chr9 (49050939-49050781) | |
| 1152-1297, gnl|Mm7|chr9 (49050733-49050889) | |
| 1152-1297, gnl|monDom2|scaffold_2 (127200096-127199917) | |
| 1152-1297, gnl|oryCun1|scaffold_179060 (73164-73329) | |
| 1152-1297, gnl|panTro1|chr9 (115111331-115111512) | |
| 1152-1297, gnl|rheMac2|chr14 (112208271-112208451) | |
| 1152-1297, gnl|rn3|chr8 (52360588-52360430) |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 92-262, gnl|bosTau2|chr15 (10703549-10703379) | |
| 92-262, gnl|canFam2|chr5 (22529958-22529784) | |
| 92-262, gnl|danRer3|chr21 (16037844-16037676) | |
| 92-262, gnl|dasNov1|scaffold_64933 (1303-1468) | |
| 92-262, gnl|echTel1|scaffold_325345 (56748-56578) | |
| 92-262, gnl|fr1|chrUn (196267297-196267471) | |
| 92-262, gnl|galGal2|chr24 (5144996-5144822) | |
| 92-262, gnl|hg17|chr11 (113115142-113115316) | |
| 92-262, gnl|Hg17|chr11 (113115314-113115144) | |
| 92-262, gnl|mm7|chr9 (49045498-49045324) | |
| 92-262, gnl|Mm7|chr9 (49045324-49045494) | |
| 92-262, gnl|monDom2|scaffold_2 (127193828-127193654) | |
| 92-262, gnl|oryCun1|scaffold_215105 (6511-6337) | |
| 92-262, gnl|panTro1|chr9 (115117403-115117577) | |
| 92-262, gnl|rheMac2|chr14 (112214369-112214543) | |
| 92-262, gnl|rn3|chr8 (52355730-52355556) | |
| 92-262, gnl|tetNig1|chr7 (10207014-10207188) | |
| 92-262, gnl|xenTro1|scaffold_300 (612895-612721) | |
| 385-525, gnl|bosTau2|chr15 (10701777-10701637) | |
| 385-525, gnl|canFam2|chr5 (22531965-22531802) | |
| 385-525, gnl|danRer3|chr21 (16040237-16040094) | |
| 385-525, gnl|dasNov1|scaffold_89548 (35-198) | |
| 385-525, gnl|echTel1|scaffold_142325 (605-440) | |
| 385-525, gnl|fr1|chrUn (196266793-196266954) | |
| 385-525, gnl|galGal2|chr24 (5146276-5146116) | |
| 385-525, gnl|hg17|chr11 (113113499-113113661) | |
| 385-525, gnl|Hg17|chr11 (113113642-113113503) | |
| 385-525, gnl|mm7|chr9 (49047164-49047007) | |
| 385-525, gnl|Mm7|chr9 (49047023-49047158) | |
| 385-525, gnl|monDom2|scaffold_2 (127196556-127196398) | |
| 385-525, gnl|oryCun1|scaffold_215105 (8814-8651) | |
| 385-525, gnl|panTro1|chr9 (115115759-115115921) | |
| 385-525, gnl|rheMac2|chr14 (112212722-112212884) | |
| 385-525, gnl|rn3|chr8 (52357424-52357267) | |
| 385-525, gnl|tetNig1|chr7 (10206599-10206742) | |
| 385-525, gnl|xenTro1|scaffold_300 (615152-614994) | |
| 727-988, gnl|bosTau2|chr15 (10697879-10697619) | |
| 727-988, gnl|Hg17|chr11 (113109747-113109466) | |
| 727-988, gnl|Mm7|chr9 (49050319-49050608) | |
| 1152-1297, gnl|bosTau2|chr15 (10697501-10697354) | |
| 1152-1297, gnl|canFam2|chr5 (22535947-22535786) | |
| 1152-1297, gnl|dasNov1|scaffold_10172 (7009-7170) | |
| 1152-1297, gnl|echTel1|scaffold_325345 (62242-62076) | |
| 1152-1297, gnl|hg17|chr11 (113109070-113109251) | |
| 1152-1297, gnl|Hg17|chr11 (113109286-113109120) | |
| 1152-1297, gnl|mm7|chr9 (49050939-49050781) | |
| 1152-1297, gnl|Mm7|chr9 (49050733-49050889) | |
| 1152-1297, gnl|monDom2|scaffold_2 (127200096-127199917) | |
| 1152-1297, gnl|oryCun1|scaffold_179060 (73164-73329) | |
| 1152-1297, gnl|panTro1|chr9 (115111331-115111512) | |
| 1152-1297, gnl|rheMac2|chr14 (112208271-112208451) | |
| 1152-1297, gnl|rn3|chr8 (52360588-52360430) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| csk (0.281492) | |
| hlv (0.278513) | |
| hea (0.204499) | |
| sin (0.174948) | |
| ute (0.132784) | |
| sug (0.127291) | |
| ese (0.126502) | |
| clu (0.119646) | |
| cty (0.10408) | |
| ldo (0.0970026) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| csk (0.281492) | |
| hlv (0.278513) | |
| hea (0.204499) | |
| sin (0.174948) | |
| ute (0.132784) | |
| sug (0.127291) | |
| ese (0.126502) | |
| clu (0.119646) | |
| cty (0.10408) | |
| ldo (0.0970026) |