Ss1.1-Pig4-TMW8047J20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCTGCAAGAGCCACCTAGTCAGGCAGCAGGCAACACCCCCAGCCCAGACCCTGCAGCCC ATCGGCTGCTCTCCGCCCGTGGCGCCTGCCTGCTGGGCCTGCTGGCCACCACCAGTGCTC GACCAACGGCGTTGTTGCCTGCCGTGCAGAGCTACTCGAGCTTGCCCTATGGGCGCTTGG CCTACCACTTGGCTGTGGTGCTGGGAAGTGCCTCCAACCCCCTCGCCTGCTTCCTGGCCA GGGCATTCTATGGCAGGTCCCTGGCAGGGCTGGGTGGTCTCTCTCTGCTTGGCACACTCT TTGGGGCCTACCTGATGGCACTGGCAATCCTGAGCCCCTGCCCACCCCTGGTGGGCACCT CTGCAGGGATGGTCCTTGTGGTGGTGTTGTGGGCTCTGTGTCTGGGCGTGTTCTCATACG TGAAGGTGGCTACCAGCTCCCTGCTGCATGGGGGCGGCCCGCCGGCATTGTTGGCAGCTG GCGTGGCCATCCAGGTGGGCTCCCTGCTCGGTGCTGTCACCATGTTCCCGCCCACCAGCA TCTACCGCGTGTTCCAGAGCAGGAAGGACTGTGTGGACCCCTGTGGACCCTGAGTCGGGG CGGGGACTTCACTCCACCCCACCCCCACCCCCGCGTCTTCGGGTTGGGGCTGCCGCAGTG CCTGTCTGCCCACGGCCCCGGGAGGCCCGGCCCACACGTGGCCAGTCCGGGACCCCTGCA CACTCCACGGGAGAGCCTGGGGCACAGGGCAGGCTCAGAGCCAGGGCCCGGCCGGGGACT CTGTGCAGTTTGTACAATAAAGCACTTGGCTTCCGTCATTGGATTCAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCTGCAAGAGCCACCTAGTCAGGCAGCAGGCAACACCCCCAGCCCAGACCCTGCAGCCC ATCGGCTGCTCTCCGCCCGTGGCGCCTGCCTGCTGGGCCTGCTGGCCACCACCAGTGCTC GACCAACGGCGTTGTTGCCTGCCGTGCAGAGCTACTCGAGCTTGCCCTATGGGCGCTTGG CCTACCACTTGGCTGTGGTGCTGGGAAGTGCCTCCAACCCCCTCGCCTGCTTCCTGGCCA GGGCATTCTATGGCAGGTCCCTGGCAGGGCTGGGTGGTCTCTCTCTGCTTGGCACACTCT TTGGGGCCTACCTGATGGCACTGGCAATCCTGAGCCCCTGCCCACCCCTGGTGGGCACCT CTGCAGGGATGGTCCTTGTGGTGGTGTTGTGGGCTCTGTGTCTGGGCGTGTTCTCATACG TGAAGGTGGCTACCAGCTCCCTGCTGCATGGGGGCGGCCCGCCGGCATTGTTGGCAGCTG GCGTGGCCATCCAGGTGGGCTCCCTGCTCGGTGCTGTCACCATGTTCCCGCCCACCAGCA TCTACCGCGTGTTCCAGAGCAGGAAGGACTGTGTGGACCCCTGTGGACCCTGAGTCGGGG CGGGGACTTCACTCCACCCCACCCCCACCCCCGCGTCTTCGGGTTGGGGCTGCCGCAGTG CCTGTCTGCCCACGGCCCCGGGAGGCCCGGCCCACACGTGGCCAGTCCGGGACCCCTGCA CACTCCACGGGAGAGCCTGGGGCACAGGGCAGGCTCAGAGCCAGGGCCCGGCCGGGGACT CTGTGCAGTTTGTACAATAAAGCACTTGGCTTCCGTCATTGGATTCAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 3-120, - strand, RNAz p=0.983 | |
| 43-258, - strand, RNAz p=0.667615 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 3-120, - strand, RNAz p=0.983 | |
| 43-258, - strand, RNAz p=0.667615 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 3-258, gnl|bosTau2|chr14 (3443303-3443048) | |
| 3-258, gnl|canFam2|chr13 (40815715-40815554) | |
| 3-258, gnl|danRer3|chr19 (24951250-24951411) | |
| 3-258, gnl|dasNov1|scaffold_233286 (1224-1064) | |
| 3-258, gnl|echTel1|scaffold_305100 (46850-46689) | |
| 3-258, gnl|fr1|chrUn (110782378-110782223) | |
| 3-258, gnl|galGal2|chr20 (9508785-9508624) | |
| 3-258, gnl|hg17|chr17 (4877496-4877657) | |
| 3-258, gnl|Hg17|chr8 (145554708-145554963) | |
| 3-258, gnl|loxAfr1|scaffold_51541 (12223-12384) | |
| 3-258, gnl|mm7|chr15 (76623136-76622975) | |
| 3-258, gnl|Mm7|chr15 (76622879-76623134) | |
| 3-258, gnl|monDom2|scaffold_79 (3053303-3053142) | |
| 3-258, gnl|oryCun1|scaffold_214793 (48568-48396) | |
| 3-258, gnl|panTro1|chr19 (5213388-5213549) | |
| 3-258, gnl|rheMac2|chr16 (4833364-4833525) | |
| 3-258, gnl|rn3|chr7 (114626687-114626526) | |
| 3-258, gnl|tetNig1|chr9 (9288946-9288791) | |
| 3-258, gnl|xenTro1|scaffold_6216 (3690-3850) | |
| 380-753, gnl|bosTau2|chr14 (3442730-3442368) | |
| 380-753, gnl|Hg17|chr8 (145555270-145555633) | |
| 380-753, gnl|Mm7|chr15 (76623466-76623839) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-258, gnl|bosTau2|chr14 (3443303-3443048) | |
| 3-258, gnl|canFam2|chr13 (40815715-40815554) | |
| 3-258, gnl|danRer3|chr19 (24951250-24951411) | |
| 3-258, gnl|dasNov1|scaffold_233286 (1224-1064) | |
| 3-258, gnl|echTel1|scaffold_305100 (46850-46689) | |
| 3-258, gnl|fr1|chrUn (110782378-110782223) | |
| 3-258, gnl|galGal2|chr20 (9508785-9508624) | |
| 3-258, gnl|hg17|chr17 (4877496-4877657) | |
| 3-258, gnl|Hg17|chr8 (145554708-145554963) | |
| 3-258, gnl|loxAfr1|scaffold_51541 (12223-12384) | |
| 3-258, gnl|mm7|chr15 (76623136-76622975) | |
| 3-258, gnl|Mm7|chr15 (76622879-76623134) | |
| 3-258, gnl|monDom2|scaffold_79 (3053303-3053142) | |
| 3-258, gnl|oryCun1|scaffold_214793 (48568-48396) | |
| 3-258, gnl|panTro1|chr19 (5213388-5213549) | |
| 3-258, gnl|rheMac2|chr16 (4833364-4833525) | |
| 3-258, gnl|rn3|chr7 (114626687-114626526) | |
| 3-258, gnl|tetNig1|chr9 (9288946-9288791) | |
| 3-258, gnl|xenTro1|scaffold_6216 (3690-3850) | |
| 380-753, gnl|bosTau2|chr14 (3442730-3442368) | |
| 380-753, gnl|Hg17|chr8 (145555270-145555633) | |
| 380-753, gnl|Mm7|chr15 (76623466-76623839) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| nmm (0.265604) | |
| fbs (0.175346) | |
| cje (0.165235) | |
| nco (0.161734) | |
| eli (0.151814) | |
| ese (0.126502) | |
| eje (0.0988338) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nmm (0.265604) | |
| fbs (0.175346) | |
| cje (0.165235) | |
| nco (0.161734) | |
| eli (0.151814) | |
| ese (0.126502) | |
| eje (0.0988338) |