Non-Coding RNA Search

Ss1.1-Pig4-TMW8047K22.3

Sequence:


               
               GTTCTTCCACGCGGGACGTGCAGTGCGTGGACACGCGGGACTTCCGGCCACTGCGGCCCT
TCCACTGCCAGCCGGGGCCTGCCAAGCCGCCTGCCCGCCGGCCCTGTGGGGCCCAGCCCT
GCCTCAGCTGGTACACCTCTTCCTGGAGGGAGTGTTCTGAGGCCTGCGGCGGGGGCGAGC
AGCAGCGTTTGGTCACCTGCCCAGAGCCGGGCCTCTGCGAGGAAGCGCTAAGACCCAACA
GCACACGACCCTGCAACACCCACCCCTGCACACAGTGGGTGGTGGGGCCCTGGGGCCAGT
GCTCAGCCCCCTGCGGTGGCGGCGTCCAGCGGCGCCTGGTCAAGTGCGTTAATACCCAGA
GTGGGCTGCCCGAGGAAGACAGCGACCAGTGCGGCCACGAGGCCTGGCCCGAGAGCTCCC
GGCCTTGTGGCATCCAGGACTGCGAGCTCACAGAGCTGCCACGCTGTGAGCGCGATCGCC
TGTCGTTTGGTTTCTGCGAGACTCTGCGCCTGCTGGGCCGCTGCCAGCTGCCCACCGTCC
GCTCCCAGTGCTGTCGCTCCTGCCCCCTGCCCGGCCACGGCGCCCCCTCCCGTGGCCATC
AGCGGGTCGCCCGCCGCTGACCCACGGCCCAGCCCAGCCAGGATTCCCAGATCGACAGAC
ACACAGACCTCAGCGCCCAGCACGGGCCGCGGCGGAGCCCCTGTCCCTCGCGCCCTCATG
GTGCTAACCCGCCCCTGCCAGCGGCAGGCTGGGGACCCCTCCCCTCAGAAAAGGTATTTT
TTTATTCTAACAGTTTGTGTAACAATTTATTATTATATTATTATTATACATAAACGAGCA
TCTACTGTTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCTTCCACGCGGGACGTGCAGTGCGTGGACACGCGGGACTTCCGGCCACTGCGGCCCT
TCCACTGCCAGCCGGGGCCTGCCAAGCCGCCTGCCCGCCGGCCCTGTGGGGCCCAGCCCT
GCCTCAGCTGGTACACCTCTTCCTGGAGGGAGTGTTCTGAGGCCTGCGGCGGGGGCGAGC
AGCAGCGTTTGGTCACCTGCCCAGAGCCGGGCCTCTGCGAGGAAGCGCTAAGACCCAACA
GCACACGACCCTGCAACACCCACCCCTGCACACAGTGGGTGGTGGGGCCCTGGGGCCAGT
GCTCAGCCCCCTGCGGTGGCGGCGTCCAGCGGCGCCTGGTCAAGTGCGTTAATACCCAGA
GTGGGCTGCCCGAGGAAGACAGCGACCAGTGCGGCCACGAGGCCTGGCCCGAGAGCTCCC
GGCCTTGTGGCATCCAGGACTGCGAGCTCACAGAGCTGCCACGCTGTGAGCGCGATCGCC
TGTCGTTTGGTTTCTGCGAGACTCTGCGCCTGCTGGGCCGCTGCCAGCTGCCCACCGTCC
GCTCCCAGTGCTGTCGCTCCTGCCCCCTGCCCGGCCACGGCGCCCCCTCCCGTGGCCATC
AGCGGGTCGCCCGCCGCTGACCCACGGCCCAGCCCAGCCAGGATTCCCAGATCGACAGAC
ACACAGACCTCAGCGCCCAGCACGGGCCGCGGCGGAGCCCCTGTCCCTCGCGCCCTCATG
GTGCTAACCCGCCCCTGCCAGCGGCAGGCTGGGGACCCCTCCCCTCAGAAAAGGTATTTT
TTTATTCTAACAGTTTGTGTAACAATTTATTATTATATTATTATTATACATAAACGAGCA
TCTACTGTTTTG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61882645|ref|XP_607997.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61882645|ref|XP_607997.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-152, gnl|bosTau2|chr21 (1016666-1016815)
               

               
               3-152, gnl|Hg17|chr15 (76067884-76068033)
               

               
               3-152, gnl|Mm7|chr9 (89824428-89824577)
               


               
               463-850, gnl|bosTau2|chr21 (1020542-1020937)
               

               
               463-850, gnl|Hg17|chr15 (76072300-76072683)
               

               
               463-850, gnl|Mm7|chr9 (89828441-89828825)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-152, gnl|bosTau2|chr21 (1016666-1016815)
               

               
               3-152, gnl|Hg17|chr15 (76067884-76068033)
               

               
               3-152, gnl|Mm7|chr9 (89824428-89824577)
               


               
               463-850, gnl|bosTau2|chr21 (1020542-1020937)
               

               
               463-850, gnl|Hg17|chr15 (76072300-76072683)
               

               
               463-850, gnl|Mm7|chr9 (89828441-89828825)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               elu (0.385356)
               

               
               nms (0.213858)
               

               
               eje (0.0988338)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               nms (0.213858)
               

               
               eje (0.0988338)

	3-152, gnl\|bosTau2\|chr21 (1016666-1016815)
	3-152, gnl\|Hg17\|chr15 (76067884-76068033)
	3-152, gnl\|Mm7\|chr9 (89824428-89824577)

	463-850, gnl\|bosTau2\|chr21 (1020542-1020937)
	463-850, gnl\|Hg17\|chr15 (76072300-76072683)
	463-850, gnl\|Mm7\|chr9 (89828441-89828825)