Non-Coding RNA Search

Ss1.1-Pig4-TMW8047L02.3

Sequence:


               
               ACTCGGCGTTGCTTCTACAGTGGCTAGGGGTCTCATCAGAGCTACAGCTGCCGACCTATG
CCACAGCCACAGCAACTCTGGATTGGAGCTGCACCTGCGACCTCCACCACGGCTCACGGC
AACACCGGATCCTTAACCCACGGAGTGAAGCCAGGGATCAAACCCGCATCTTCACAGATA
CTTAGTTGGGTTCTTAACCCACTGAGCCAGGACAGGAACTCCTGATAGTGGACTTCTGTT
TATACATCACCTGCGTTTATATGCCTACTGCCATGGTGAAGGCTGGACAAGGTGCTCCTC
TAGCTCGCCCTTCTTACCTCAGATGCCTGAGCAGCACAAGGCAAACCCGGAGCAGCTTCT
CAGGAGCTGACAGATCTGTTGGGGCTCAGAAGGGCGGTTACACTTTGAACCTGCTATAAA
GTGAGCTTGTAACCCACAACGTCCTGTGCCCACTTCATGCTTCTCATGTGCACACCTAGT
GCAGGTGAGCCACGAGAGCCAGGGCACTCCCAATACGTGCCCCTTCTCCCCAAGACGGGA
GAGGTGATCTGGGCAGGCAGCCCAGGCTGGGCAAGTTGAGTTAGGGCATAGACAGGCTTG
GGGTGAGATTCATTTATTGACGTGTTGGACACAATAAAACCACAACTGTTATCAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTCGGCGTTGCTTCTACAGTGGCTAGGGGTCTCATCAGAGCTACAGCTGCCGACCTATG
CCACAGCCACAGCAACTCTGGATTGGAGCTGCACCTGCGACCTCCACCACGGCTCACGGC
AACACCGGATCCTTAACCCACGGAGTGAAGCCAGGGATCAAACCCGCATCTTCACAGATA
CTTAGTTGGGTTCTTAACCCACTGAGCCAGGACAGGAACTCCTGATAGTGGACTTCTGTT
TATACATCACCTGCGTTTATATGCCTACTGCCATGGTGAAGGCTGGACAAGGTGCTCCTC
TAGCTCGCCCTTCTTACCTCAGATGCCTGAGCAGCACAAGGCAAACCCGGAGCAGCTTCT
CAGGAGCTGACAGATCTGTTGGGGCTCAGAAGGGCGGTTACACTTTGAACCTGCTATAAA
GTGAGCTTGTAACCCACAACGTCCTGTGCCCACTTCATGCTTCTCATGTGCACACCTAGT
GCAGGTGAGCCACGAGAGCCAGGGCACTCCCAATACGTGCCCCTTCTCCCCAAGACGGGA
GAGGTGATCTGGGCAGGCAGCCCAGGCTGGGCAAGTTGAGTTAGGGCATAGACAGGCTTG
GGGTGAGATTCATTTATTGACGTGTTGGACACAATAAAACCACAACTGTTATCAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               293-409, - strand, RNAz p=0.57482
               

               
               449-567, - strand, RNAz p=0.544191
               

               
               466-579, - strand, RNAz p=0.954338

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               293-409, - strand, RNAz p=0.57482
               

               
               449-567, - strand, RNAz p=0.544191
               

               
               466-579, - strand, RNAz p=0.954338

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               513-640, - strand, RNAmicro p=0.993145

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               513-640, - strand, RNAmicro p=0.993145

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               222-658, gnl|bosTau2|chr19 (36505035-36504597)
               

               
               222-658, gnl|canFam2|chr9 (24168733-24167711)
               

               
               222-658, gnl|dasNov1|scaffold_128485 (1131-2175)
               

               
               222-658, gnl|echTel1|scaffold_277027 (8813-7904)
               

               
               222-658, gnl|hg17|chr17 (37430480-37431502)
               

               
               222-658, gnl|Hg17|chr17 (37430743-37431185)
               

               
               222-658, gnl|loxAfr1|scaffold_18510 (34881-35916)
               

               
               222-658, gnl|mm7|chr11 (100735955-100736841)
               

               
               222-658, gnl|Mm7|chr11 (100736228-100736646)
               

               
               222-658, gnl|monDom2|scaffold_18 (52335554-52336600)
               

               
               222-658, gnl|oryCun1|scaffold_203567 (42778-43590)
               

               
               222-658, gnl|panTro1|chr19 (40631638-40632660)
               

               
               222-658, gnl|rheMac2|chr16 (52133535-52134501)
               

               
               222-658, gnl|rn3|chr10 (89585339-89586235)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               222-658, gnl|bosTau2|chr19 (36505035-36504597)
               

               
               222-658, gnl|canFam2|chr9 (24168733-24167711)
               

               
               222-658, gnl|dasNov1|scaffold_128485 (1131-2175)
               

               
               222-658, gnl|echTel1|scaffold_277027 (8813-7904)
               

               
               222-658, gnl|hg17|chr17 (37430480-37431502)
               

               
               222-658, gnl|Hg17|chr17 (37430743-37431185)
               

               
               222-658, gnl|loxAfr1|scaffold_18510 (34881-35916)
               

               
               222-658, gnl|mm7|chr11 (100735955-100736841)
               

               
               222-658, gnl|Mm7|chr11 (100736228-100736646)
               

               
               222-658, gnl|monDom2|scaffold_18 (52335554-52336600)
               

               
               222-658, gnl|oryCun1|scaffold_203567 (42778-43590)
               

               
               222-658, gnl|panTro1|chr19 (40631638-40632660)
               

               
               222-658, gnl|rheMac2|chr16 (52133535-52134501)
               

               
               222-658, gnl|rn3|chr10 (89585339-89586235)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               ece (0.45861)
               

               
               ton (0.1755)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.45861)
               

               
               ton (0.1755)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)

	293-409, - strand, RNAz p=0.57482
	449-567, - strand, RNAz p=0.544191
	466-579, - strand, RNAz p=0.954338

	222-658, gnl\|bosTau2\|chr19 (36505035-36504597)
	222-658, gnl\|canFam2\|chr9 (24168733-24167711)
	222-658, gnl\|dasNov1\|scaffold_128485 (1131-2175)
	222-658, gnl\|echTel1\|scaffold_277027 (8813-7904)
	222-658, gnl\|hg17\|chr17 (37430480-37431502)
	222-658, gnl\|Hg17\|chr17 (37430743-37431185)
	222-658, gnl\|loxAfr1\|scaffold_18510 (34881-35916)
	222-658, gnl\|mm7\|chr11 (100735955-100736841)
	222-658, gnl\|Mm7\|chr11 (100736228-100736646)
	222-658, gnl\|monDom2\|scaffold_18 (52335554-52336600)
	222-658, gnl\|oryCun1\|scaffold_203567 (42778-43590)
	222-658, gnl\|panTro1\|chr19 (40631638-40632660)
	222-658, gnl\|rheMac2\|chr16 (52133535-52134501)
	222-658, gnl\|rn3\|chr10 (89585339-89586235)

	ece (0.45861)
	ton (0.1755)
	pty (0.142714)
	nca (0.136874)
	ute (0.132784)
	ese (0.126502)
	bla (0.124347)
	eep (0.122564)
	ebs (0.118301)