Non-Coding RNA Search

Ss1.1-Pig4-TMW8047L11.3

Sequence:


               
               GCGGCCGCTGGCTGTGAGAACCCGCCTCATTCACTCCATGGAGACACACTATGTGGATGA
GCACCATTTCCGTCTCTATCTGAAGACTCAGGCTGGAACCTACATTAAAGAGTTTGTACA
TGGAGACTTTGGAAGAACCAAGCCGAACATTGGCTCTCTGATGGATGTGACTGCAGACAT
TCTAGAGCTGGATGTTGAGTCTGTAGATGTTGACTGGCCCCCTGCTCTGGATGATTGACT
TCAAATTTGGAAACAAGGAGTAGGGTTTTCTGGCACAGTGTGGACGTCCATTCAGCATAA
ACTTTTACATGGCTGTTTACCCACCATAACGGTGCCTTGGAAACCATCTGGATCATGTTG
ATCTATATATTTTTTAATTTGTTGTAACATCTCAGGATCTATGTATGTGTATATTTTGTG
TTGAATTGTTCTAAGAATGTCATACGATTTTTCTCATTCCCTCTCCATTCCCCCACAAGC
CAAACTATGAATACTGAAACCATTTTCTAACTTTCATTTAGAGAGGTACAAACAGAATAC
ATTCTCTAGTAATCTTAGAACCTGTAATTTCTGTCAGCAAAATTTCCCTCCACAAGAGAG
ATACCACTTTTAAAATCATGTTTTAATTTTTTCAATGATCTTGATAAAAAGTTACATCTA
GCTTTAATGCATCACAGTATCCTTGTAATAGTCTAAGATATCAAATGCAAACCTGACATC
ATTAATATTTTTCCCAGTAAGCTTCAAGCAAGCTATCACCAACAGAAGTACTTTGGGTGT
GATCTGTTACAAATCTTAATGACTGGAAGTTCCTGTTTTGATAATCTAAAATTGTCAGTA
CATTTCCTGGGGGAGAAAAAGTGAAACCTTAGGAATTGAGGCATACCATGGTAAGAGACA
TTCACAAATCTTTTAACTAAGGAGACACAAGTGCCTTCAATGACTTCAATCCCAGGGATA
AGATTTTGAAAAATTTAGATTGCTAAACAAAGGTAAGCTGATATTATTCCAGACTGCTTC
AGAGTATTATCCAATTTCAGACATCCTCACCAGGTGGATATGATATTATCATCTACACTT
TATAAATGTGAAAACCAAAGAACAGAAGTTAACTGATTTATCTAAAATCGTTAGTTAATT
CCGTATCTAGGACTAGGACTGAAGTTTCCCAGTCTCTAGGTCTTTTCTAATAAACTTGAT
TATTGGGCACCTACTGTATGGAAGAGGCACCCAAGAATGTCATTTCCATGCATGTAACTA
TGACAACTGACTTTTGGAATTTAGATATCAAATCAAGCTTACCAAAAAACAGCCCAAGTA
AATTTCATATGATCGCATATGATTACCATCTGTTAATAAGTTAATCATCAGTTGGCACTA
TGAAGAGAAAAAACTTTAAGTAAGCAAAACCTAAAGAAAATGGATGAGTCATTAAGAAGT
TTCAGTAAGGAGCCTCATTAAAATTTCAGATTTATGTGCAATTTCCAGCACCCTGATTCA
ACTATCTGAGCTTATTTTAGAACACATGTGACTTGGATAGTTGTGATTACTCACTTTCCT
GTCTCTACATTAAACATGCTTCATAAATACTAAGTTGTATTATTCACCTTATGAATTAGG
AAAATGGGTTAACTGACATGAAATTTCATATGTGAATAATAGCAGATAATTTTTTCACTA
TTTTCAATCCAGAAAATGAGAAAGGGTTAATAGAAATAAACTTTTGATAAGACGGTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCCGCTGGCTGTGAGAACCCGCCTCATTCACTCCATGGAGACACACTATGTGGATGA
GCACCATTTCCGTCTCTATCTGAAGACTCAGGCTGGAACCTACATTAAAGAGTTTGTACA
TGGAGACTTTGGAAGAACCAAGCCGAACATTGGCTCTCTGATGGATGTGACTGCAGACAT
TCTAGAGCTGGATGTTGAGTCTGTAGATGTTGACTGGCCCCCTGCTCTGGATGATTGACT
TCAAATTTGGAAACAAGGAGTAGGGTTTTCTGGCACAGTGTGGACGTCCATTCAGCATAA
ACTTTTACATGGCTGTTTACCCACCATAACGGTGCCTTGGAAACCATCTGGATCATGTTG
ATCTATATATTTTTTAATTTGTTGTAACATCTCAGGATCTATGTATGTGTATATTTTGTG
TTGAATTGTTCTAAGAATGTCATACGATTTTTCTCATTCCCTCTCCATTCCCCCACAAGC
CAAACTATGAATACTGAAACCATTTTCTAACTTTCATTTAGAGAGGTACAAACAGAATAC
ATTCTCTAGTAATCTTAGAACCTGTAATTTCTGTCAGCAAAATTTCCCTCCACAAGAGAG
ATACCACTTTTAAAATCATGTTTTAATTTTTTCAATGATCTTGATAAAAAGTTACATCTA
GCTTTAATGCATCACAGTATCCTTGTAATAGTCTAAGATATCAAATGCAAACCTGACATC
ATTAATATTTTTCCCAGTAAGCTTCAAGCAAGCTATCACCAACAGAAGTACTTTGGGTGT
GATCTGTTACAAATCTTAATGACTGGAAGTTCCTGTTTTGATAATCTAAAATTGTCAGTA
CATTTCCTGGGGGAGAAAAAGTGAAACCTTAGGAATTGAGGCATACCATGGTAAGAGACA
TTCACAAATCTTTTAACTAAGGAGACACAAGTGCCTTCAATGACTTCAATCCCAGGGATA
AGATTTTGAAAAATTTAGATTGCTAAACAAAGGTAAGCTGATATTATTCCAGACTGCTTC
AGAGTATTATCCAATTTCAGACATCCTCACCAGGTGGATATGATATTATCATCTACACTT
TATAAATGTGAAAACCAAAGAACAGAAGTTAACTGATTTATCTAAAATCGTTAGTTAATT
CCGTATCTAGGACTAGGACTGAAGTTTCCCAGTCTCTAGGTCTTTTCTAATAAACTTGAT
TATTGGGCACCTACTGTATGGAAGAGGCACCCAAGAATGTCATTTCCATGCATGTAACTA
TGACAACTGACTTTTGGAATTTAGATATCAAATCAAGCTTACCAAAAAACAGCCCAAGTA
AATTTCATATGATCGCATATGATTACCATCTGTTAATAAGTTAATCATCAGTTGGCACTA
TGAAGAGAAAAAACTTTAAGTAAGCAAAACCTAAAGAAAATGGATGAGTCATTAAGAAGT
TTCAGTAAGGAGCCTCATTAAAATTTCAGATTTATGTGCAATTTCCAGCACCCTGATTCA
ACTATCTGAGCTTATTTTAGAACACATGTGACTTGGATAGTTGTGATTACTCACTTTCCT
GTCTCTACATTAAACATGCTTCATAAATACTAAGTTGTATTATTCACCTTATGAATTAGG
AAAATGGGTTAACTGACATGAAATTTCATATGTGAATAATAGCAGATAATTTTTTCACTA
TTTTCAATCCAGAAAATGAGAAAGGGTTAATAGAAATAAACTTTTGATAAGACGGTAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               819-935, + strand, RNAz p=0.760803

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               819-935, + strand, RNAz p=0.760803

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               198-1591, gnl|bosTau2|chr11 (30026451-30025101)
               

               
               198-1591, gnl|Hg17|chr2 (61081221-61079787)
               

               
               198-1591, gnl|Mm7|chr11 (23683325-23684629)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               198-1591, gnl|bosTau2|chr11 (30026451-30025101)
               

               
               198-1591, gnl|Hg17|chr2 (61081221-61079787)
               

               
               198-1591, gnl|Mm7|chr11 (23683325-23684629)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               rec (0.519211)
               

               
               pro (0.512033)
               

               
               cte (0.29274)
               

               
               lin (0.291206)
               

               
               ret (0.257467)
               

               
               mgp (0.230681)
               

               
               fcc (0.197785)
               

               
               eye (0.170503)
               

               
               spl (0.143184)
               

               
               thg (0.126791)
               

               
               cty (0.10408)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.519211)
               

               
               pro (0.512033)
               

               
               cte (0.29274)
               

               
               lin (0.291206)
               

               
               ret (0.257467)
               

               
               mgp (0.230681)
               

               
               fcc (0.197785)
               

               
               eye (0.170503)
               

               
               spl (0.143184)
               

               
               thg (0.126791)
               

               
               cty (0.10408)

	198-1591, gnl\|bosTau2\|chr11 (30026451-30025101)
	198-1591, gnl\|Hg17\|chr2 (61081221-61079787)
	198-1591, gnl\|Mm7\|chr11 (23683325-23684629)

	rec (0.519211)
	pro (0.512033)
	cte (0.29274)
	lin (0.291206)
	ret (0.257467)
	mgp (0.230681)
	fcc (0.197785)
	eye (0.170503)
	spl (0.143184)
	thg (0.126791)
	cty (0.10408)