Non-Coding RNA Search

Ss1.1-Pig4-TMW8047L14.3

Sequence:


               
               TCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGAAACTCAGATCAGCCACACAAG
GGGAAGAGCAGGCTGACGAAACCCAGAAGGACCAAGCGCTGAGACCAAAGTAGACTCGCG
GGTGGGGCTGTCCTGCTGGGGCCCAGCTCAAAAGAGGTGGGACCGAGGCACCTGGGCCGA
AGAGATGCCCACCTAGGCAGCCTTGGGCACTTCTCCGGCCTCTGCACCAAGCACCCACCC
CAGGGACCTCCAAGCAGCCAGGAAAAGCCATGAGTTGCAACCAAAATGCCGTCGAGGATG
GAACCAAGTGACACTGCCATCTGGCTGCCCCAGCCCTGACCCCTGACCCTGATGCGAGGC
CAGAGAGGGCCGAGATGCGGGGCCCAGCACGGCCCGGCCTGGAGCGGCAGCCGGAGTGCA
CCCTCGCTGGCCCTGCTGGAGTTTGCTGTGGGCACGAGGCGCGGGCGCCCTTCCAAAGCA
CATACTCACTGAATGTTTACAGACTGGCTGTCCTGGCAGGGCTTTCAACTGCACATGTTT
TTTATACTTTCTTTCTTTTTTTTTTTTTTTTTAATATTTTTTACAAAAAAAAGATTTTAT
ACAAGCAATATATATATGGATTTCTATAATCACTCGATGTGATACAGTATAAATATGCTA
TGGTTTGTTTGTTACGAACAGATATCCAGCAGTTATGGCAGTTGTGTGTAACTCCTAAGT
ACTGTAGACTCTGGGTGTTGGGGTGGCCGGGGCGGGAGTGGGGTGCATTTCCATCCTGGT
AAACCCTCCATAGTACTCAGTCCTGTATCGCTCAGTAAACCTTACTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGAAACTCAGATCAGCCACACAAG
GGGAAGAGCAGGCTGACGAAACCCAGAAGGACCAAGCGCTGAGACCAAAGTAGACTCGCG
GGTGGGGCTGTCCTGCTGGGGCCCAGCTCAAAAGAGGTGGGACCGAGGCACCTGGGCCGA
AGAGATGCCCACCTAGGCAGCCTTGGGCACTTCTCCGGCCTCTGCACCAAGCACCCACCC
CAGGGACCTCCAAGCAGCCAGGAAAAGCCATGAGTTGCAACCAAAATGCCGTCGAGGATG
GAACCAAGTGACACTGCCATCTGGCTGCCCCAGCCCTGACCCCTGACCCTGATGCGAGGC
CAGAGAGGGCCGAGATGCGGGGCCCAGCACGGCCCGGCCTGGAGCGGCAGCCGGAGTGCA
CCCTCGCTGGCCCTGCTGGAGTTTGCTGTGGGCACGAGGCGCGGGCGCCCTTCCAAAGCA
CATACTCACTGAATGTTTACAGACTGGCTGTCCTGGCAGGGCTTTCAACTGCACATGTTT
TTTATACTTTCTTTCTTTTTTTTTTTTTTTTTAATATTTTTTACAAAAAAAAGATTTTAT
ACAAGCAATATATATATGGATTTCTATAATCACTCGATGTGATACAGTATAAATATGCTA
TGGTTTGTTTGTTACGAACAGATATCCAGCAGTTATGGCAGTTGTGTGTAACTCCTAAGT
ACTGTAGACTCTGGGTGTTGGGGTGGCCGGGGCGGGAGTGGGGTGCATTTCCATCCTGGT
AAACCCTCCATAGTACTCAGTCCTGTATCGCTCAGTAAACCTTACTCT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               115-268, - strand, RNAz p=0.979782
               

               
               590-683, - strand, RNAz p=0.680426

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               115-268, - strand, RNAz p=0.979782
               

               
               590-683, - strand, RNAz p=0.680426

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               126-268, - strand, RNAmicro p=0.997364

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               126-268, - strand, RNAmicro p=0.997364

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               36-828, gnl|bosTau2|chr10 (57045411-57046183)
               

               
               36-828, gnl|Hg17|chr14 (75006082-75006903)
               

               
               36-828, gnl|Mm7|chr12 (83640591-83641348)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               36-828, gnl|bosTau2|chr10 (57045411-57046183)
               

               
               36-828, gnl|Hg17|chr14 (75006082-75006903)
               

               
               36-828, gnl|Mm7|chr12 (83640591-83641348)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               pgl (0.236967)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               che (0.136314)
               

               
               eje (0.0988338)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.236967)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               che (0.136314)
               

               
               eje (0.0988338)

	115-268, - strand, RNAz p=0.979782
	590-683, - strand, RNAz p=0.680426

	36-828, gnl\|bosTau2\|chr10 (57045411-57046183)
	36-828, gnl\|Hg17\|chr14 (75006082-75006903)
	36-828, gnl\|Mm7\|chr12 (83640591-83641348)

	pgl (0.236967)
	eye (0.170503)
	cki (0.165235)
	fco (0.157208)
	ski (0.146735)
	che (0.136314)
	eje (0.0988338)