Ss1.1-Pig4-TMW8047L17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGTGGAGTGAAGAAGCGGGAGTGCACAGTCGTGGTAAACCAGGAGGAATGCAGCCTTCAG GAGCTCCTTGTCACTCTTCTCTGATCTCTTCAGTGAACTCTCCTTCTCAGCCCAGGAACT CCTGAGTGCATCCATAATGTCCGGCTGCTCTAACAGCTTGGGGAAAGTGGCCAGTACTGG ATTACTAATTAAATCAGCACTGTCCATGCTCATCCTGTCTTTCAGAAGCACATCTCCAAG AATTTGGCGATAAAATATCAGCAAGTGAGTGGAGCACATACTCCCCACCAAGGTTTCTGG CAGTAGACTTAGCATGTTCCTTGATCTTCTGTTTAAAGACCGAAGTTTCACCAGAAGTTG AGGCTGCCTTCTCACACTTATCATCTGACGGAAAACACTACCATGTGCTCTTCTGGATAC TGAAGGGTCTACTTCAACACCTTTTTCATAAGGAGTGCCGCCATTCAGGAAGAGTTCGTA TGTTTTTGCTGGAATAGGAACTCCACTGGCATCGAAAAGCTTAAGAAACACCCAGCCACA ACTTAATTCTCCTCTTTCACCAGTTGAATTGCGAATATAAGAAATTCCAAGTTCAAATAA TATTCCGAGATCTGGAGATGAAGAATTGGACCTGATGAAACAATCACCATCAAGCAAGCA CGGCAGAATGCCAGTAACCTGGGGAGAAAAGGTCCATGTTTTGGGCTTCTTAGGTTGCCA CGTGGCCCTGACTGTGTGAATGTTGCTCAAAACCTTGCTGCCGTCAAACACACAAAGGCG CACATGTCTGCTCAAAACCTGGATGCTTGCTCCTGGAAGAGGAATCATTTTACAACTCCA GAGGGTCAGAATCAATGAGACACGACTTGGTCTTGACCTAATAGCGCCTGTTTTAGCATC CCACAGAAGATCTTTGAAGGCCAGTTGTGAAGGAGAGAGCTCTGGCTGTAAGAAGTAACT TGCTCGAAACTGATTGCCTTCCTCCAGAAGCTGAAAGAGTGTGGAGGGCCTGAACCCGGC AGGAATAGCGCCCATTGTGGTCAACACATCCACAGTGTTTATCTGCTCTGAGATGGCTTT TCGGACAGCACTCCAGTGAGAATCAGCTCTCTGTTTAACTTCTGCTCCCTCTGCCGTTTC ATTCCCCACCTCTGTGTCTTCGTCACTGCCCTCTTCACTAGATTCTTCGCCTTCTTCATT ATAGGGCTCTAAGTAGGTTCTGGGAGTAAGACCTTTGTTTCCTTGGGCGTTCTTGGCCAG CCACCAACCATCAGGGTTTTTTTCAATTATGAGGAGAATTTCCCCTTTCTTAAATGTAAG ATCTCCGACTTGCTGAGCAGTGAAATCTCCAACAGCAATGTATCTTCCACTGGGTGCCTC TTGGTGAGGCTCATTTTCCTGTTTCTTTTCCTCTTCCTTTTCTGTTTCTTCTTCCTCCCC ACCACTTTCTTCACTTTCTTCTTTGTCTTCGTCTTCTTCTTCTTCATCTTCTTCAGCAGA ACTGTCATCTTCCTCTCTTTCAGTAAGTGCCCGAGTTTCAGTTATATTTTCTTTACTTAT GGACACAGAAAGTTCCTGCAGTTGGTGGGTAAGCTTATCCAAAAGATTGTGTTCATCTTC TTTCTTCTGATTATAATTCCCAACAGGTGCAGGTTCATCCGCTTTGTTTAATTTTTGAAG AGCATTTTTATTTTCATCTATTGCCTGTTTTAACTGGATACATCTTTGGTAAATATCTTG TCTTTTGCTGGCTTCTAGAGCTCCTTTCAGTCGACTCTCAGAAAGCAAACCTTCAACCTG CTTCTTCAGTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGTGGAGTGAAGAAGCGGGAGTGCACAGTCGTGGTAAACCAGGAGGAATGCAGCCTTCAG GAGCTCCTTGTCACTCTTCTCTGATCTCTTCAGTGAACTCTCCTTCTCAGCCCAGGAACT CCTGAGTGCATCCATAATGTCCGGCTGCTCTAACAGCTTGGGGAAAGTGGCCAGTACTGG ATTACTAATTAAATCAGCACTGTCCATGCTCATCCTGTCTTTCAGAAGCACATCTCCAAG AATTTGGCGATAAAATATCAGCAAGTGAGTGGAGCACATACTCCCCACCAAGGTTTCTGG CAGTAGACTTAGCATGTTCCTTGATCTTCTGTTTAAAGACCGAAGTTTCACCAGAAGTTG AGGCTGCCTTCTCACACTTATCATCTGACGGAAAACACTACCATGTGCTCTTCTGGATAC TGAAGGGTCTACTTCAACACCTTTTTCATAAGGAGTGCCGCCATTCAGGAAGAGTTCGTA TGTTTTTGCTGGAATAGGAACTCCACTGGCATCGAAAAGCTTAAGAAACACCCAGCCACA ACTTAATTCTCCTCTTTCACCAGTTGAATTGCGAATATAAGAAATTCCAAGTTCAAATAA TATTCCGAGATCTGGAGATGAAGAATTGGACCTGATGAAACAATCACCATCAAGCAAGCA CGGCAGAATGCCAGTAACCTGGGGAGAAAAGGTCCATGTTTTGGGCTTCTTAGGTTGCCA CGTGGCCCTGACTGTGTGAATGTTGCTCAAAACCTTGCTGCCGTCAAACACACAAAGGCG CACATGTCTGCTCAAAACCTGGATGCTTGCTCCTGGAAGAGGAATCATTTTACAACTCCA GAGGGTCAGAATCAATGAGACACGACTTGGTCTTGACCTAATAGCGCCTGTTTTAGCATC CCACAGAAGATCTTTGAAGGCCAGTTGTGAAGGAGAGAGCTCTGGCTGTAAGAAGTAACT TGCTCGAAACTGATTGCCTTCCTCCAGAAGCTGAAAGAGTGTGGAGGGCCTGAACCCGGC AGGAATAGCGCCCATTGTGGTCAACACATCCACAGTGTTTATCTGCTCTGAGATGGCTTT TCGGACAGCACTCCAGTGAGAATCAGCTCTCTGTTTAACTTCTGCTCCCTCTGCCGTTTC ATTCCCCACCTCTGTGTCTTCGTCACTGCCCTCTTCACTAGATTCTTCGCCTTCTTCATT ATAGGGCTCTAAGTAGGTTCTGGGAGTAAGACCTTTGTTTCCTTGGGCGTTCTTGGCCAG CCACCAACCATCAGGGTTTTTTTCAATTATGAGGAGAATTTCCCCTTTCTTAAATGTAAG ATCTCCGACTTGCTGAGCAGTGAAATCTCCAACAGCAATGTATCTTCCACTGGGTGCCTC TTGGTGAGGCTCATTTTCCTGTTTCTTTTCCTCTTCCTTTTCTGTTTCTTCTTCCTCCCC ACCACTTTCTTCACTTTCTTCTTTGTCTTCGTCTTCTTCTTCTTCATCTTCTTCAGCAGA ACTGTCATCTTCCTCTCTTTCAGTAAGTGCCCGAGTTTCAGTTATATTTTCTTTACTTAT GGACACAGAAAGTTCCTGCAGTTGGTGGGTAAGCTTATCCAAAAGATTGTGTTCATCTTC TTTCTTCTGATTATAATTCCCAACAGGTGCAGGTTCATCCGCTTTGTTTAATTTTTGAAG AGCATTTTTATTTTCATCTATTGCCTGTTTTAACTGGATACATCTTTGGTAAATATCTTG TCTTTTGCTGGCTTCTAGAGCTCCTTTCAGTCGACTCTCAGAAAGCAAACCTTCAACCTG CTTCTTCAGTTC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 197-309, gnl|bosTau2|chr11 (2478296-2478184) | |
| 197-309, gnl|Hg17|chr2 (110246633-110246745) | |
| 197-309, gnl|Mm7|chr2 (127488855-127488967) | |
| 568-681, gnl|bosTau2|chr11 (296120-296007) | |
| 568-681, gnl|canFam2|chr17 (38210860-38211060) | |
| 568-681, gnl|danRer3|chr17 (20130060-20130241) | |
| 568-681, gnl|galGal2|chr3 (2983962-2984190) | |
| 568-681, gnl|hg17|chr2 (110262816-110263011) | |
| 568-681, gnl|Hg17|chr2 (110262868-110262981) | |
| 568-681, gnl|loxAfr1|scaffold_117658 (1734-1552) | |
| 568-681, gnl|mm7|chr2 (127500379-127500572) | |
| 568-681, gnl|Mm7|chr2 (127500429-127500542) | |
| 568-681, gnl|monDom2|scaffold_1 (65864383-65864193) | |
| 568-681, gnl|panTro1|chr12 (113296025-113296220) | |
| 568-681, gnl|rheMac2|chr13 (109864226-109864421) | |
| 568-681, gnl|rn3|chr3 (115187367-115187559) | |
| 752-882, gnl|bosTau2|chr11 (278152-278022) | |
| 752-882, gnl|Hg17|chr2 (110275077-110275207) | |
| 752-882, gnl|Mm7|chr2 (127504630-127504760) | |
| 1299-1537, gnl|bosTau2|chr11 (270910-270674) | |
| 1299-1537, gnl|Hg17|chr2 (110284747-110284950) | |
| 1299-1537, gnl|Mm7|chr2 (127514740-127514952) | |
| 1538-1662, gnl|bosTau2|chr11 (263539-263415) | |
| 1538-1662, gnl|Hg17|chr2 (110293375-110293499) | |
| 1538-1662, gnl|Mm7|chr2 (127518122-127518246) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 197-309, gnl|bosTau2|chr11 (2478296-2478184) | |
| 197-309, gnl|Hg17|chr2 (110246633-110246745) | |
| 197-309, gnl|Mm7|chr2 (127488855-127488967) | |
| 568-681, gnl|bosTau2|chr11 (296120-296007) | |
| 568-681, gnl|canFam2|chr17 (38210860-38211060) | |
| 568-681, gnl|danRer3|chr17 (20130060-20130241) | |
| 568-681, gnl|galGal2|chr3 (2983962-2984190) | |
| 568-681, gnl|hg17|chr2 (110262816-110263011) | |
| 568-681, gnl|Hg17|chr2 (110262868-110262981) | |
| 568-681, gnl|loxAfr1|scaffold_117658 (1734-1552) | |
| 568-681, gnl|mm7|chr2 (127500379-127500572) | |
| 568-681, gnl|Mm7|chr2 (127500429-127500542) | |
| 568-681, gnl|monDom2|scaffold_1 (65864383-65864193) | |
| 568-681, gnl|panTro1|chr12 (113296025-113296220) | |
| 568-681, gnl|rheMac2|chr13 (109864226-109864421) | |
| 568-681, gnl|rn3|chr3 (115187367-115187559) | |
| 752-882, gnl|bosTau2|chr11 (278152-278022) | |
| 752-882, gnl|Hg17|chr2 (110275077-110275207) | |
| 752-882, gnl|Mm7|chr2 (127504630-127504760) | |
| 1299-1537, gnl|bosTau2|chr11 (270910-270674) | |
| 1299-1537, gnl|Hg17|chr2 (110284747-110284950) | |
| 1299-1537, gnl|Mm7|chr2 (127514740-127514952) | |
| 1538-1662, gnl|bosTau2|chr11 (263539-263415) | |
| 1538-1662, gnl|Hg17|chr2 (110293375-110293499) | |
| 1538-1662, gnl|Mm7|chr2 (127518122-127518246) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.207814) | |
| fhi (0.169578) | |
| cty (0.10408) |