Non-Coding RNA Search

Ss1.1-Pig4-TMW8047M02.3

Sequence:


               
               ATCGGGGATGCCTCTGTGGCCTGGAAAATCAGATGTGGATCAGCTCTATCTGATTAGGAA
AACCTTGGGAGACCTCATTCCTAGGCACCAGCAGGTGTTTAGCATGAATCAGTACTTCAG
TGGGGTAGAAATTCCAGACCCCGAAGATATGGAACCACTTGAATTAAAATTTCCAAACAT
CTCTTATCCTGCCCTGGGGCTCTTAAAGGGCTGTCTACACATGAATCCTGTTGAGAGACT
GACATGTGAGCAGCTGTTGCAGCATCCATATTTTGACAGCATCAGAGAATCAGGAGATTT
GGCCAAAGAGCATGAGAAACCAACAAGGAAGACCCTGAGACAGAGTCGAAAGCACCTGCC
AGGGTTGCAATACCTACCTCAGCTGACTAGCAGCAGCATCCTTCCAGCTTTGGATAATAA
GAAATACTACTGTAACACCAAGAAACTTAACTACCGTTTTCCAAACATTTGAAGAGCTTG
GAGGTTGATGATGAAGAATTGATCAAAAATTTGAAGAAAATAAAACATACATTTGATTGA
AAAAACTCACAATGTTGAAAAAATATCAGCAGAAAACGTAGGTAACTAACTGGGGAAGGC
CACTTGGCAAGATGTGACGGGAAATTCCAGAGGCAGCCTTCCATGCAATGATGGTGTCCA
GAACAGAAAAGAAAAACTTGTTTGGATTTTCACTTGTATTTTTGTTGTATCTAAGTAGCG
GAGCTTATGGACAGAGTACAAACTGTATCTATTGCCCACACCCTTGGCAAAATTAGAGAT
GCAAATTTGAAAAGATTTCTGCTTCATTGTACCATATGCAACAACTGAGAAATGGATTAC
AGAACGCCCGTGTATTTCCTTGGACTTCTGTTGCCTGGAGTTCTGTCTCCTCCTGCTTTT
CAGATTGTCTCATCATATTTAAGAAGAGCTTTAGTTCTTGAAATCAAAGTGCTTAAAATT
CCATTTTCTCCTTGCTCTAGCCCACGATTTTTATATTTAAAAATTTTTTGAATATTTGAG
TTGTTCAAAATATTTAAAATCTGTGGATTATCATAAAAGACTAATTTAGGTGCTTATATA
TTTAATGATATGTTTATGGACATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCGGGGATGCCTCTGTGGCCTGGAAAATCAGATGTGGATCAGCTCTATCTGATTAGGAA
AACCTTGGGAGACCTCATTCCTAGGCACCAGCAGGTGTTTAGCATGAATCAGTACTTCAG
TGGGGTAGAAATTCCAGACCCCGAAGATATGGAACCACTTGAATTAAAATTTCCAAACAT
CTCTTATCCTGCCCTGGGGCTCTTAAAGGGCTGTCTACACATGAATCCTGTTGAGAGACT
GACATGTGAGCAGCTGTTGCAGCATCCATATTTTGACAGCATCAGAGAATCAGGAGATTT
GGCCAAAGAGCATGAGAAACCAACAAGGAAGACCCTGAGACAGAGTCGAAAGCACCTGCC
AGGGTTGCAATACCTACCTCAGCTGACTAGCAGCAGCATCCTTCCAGCTTTGGATAATAA
GAAATACTACTGTAACACCAAGAAACTTAACTACCGTTTTCCAAACATTTGAAGAGCTTG
GAGGTTGATGATGAAGAATTGATCAAAAATTTGAAGAAAATAAAACATACATTTGATTGA
AAAAACTCACAATGTTGAAAAAATATCAGCAGAAAACGTAGGTAACTAACTGGGGAAGGC
CACTTGGCAAGATGTGACGGGAAATTCCAGAGGCAGCCTTCCATGCAATGATGGTGTCCA
GAACAGAAAAGAAAAACTTGTTTGGATTTTCACTTGTATTTTTGTTGTATCTAAGTAGCG
GAGCTTATGGACAGAGTACAAACTGTATCTATTGCCCACACCCTTGGCAAAATTAGAGAT
GCAAATTTGAAAAGATTTCTGCTTCATTGTACCATATGCAACAACTGAGAAATGGATTAC
AGAACGCCCGTGTATTTCCTTGGACTTCTGTTGCCTGGAGTTCTGTCTCCTCCTGCTTTT
CAGATTGTCTCATCATATTTAAGAAGAGCTTTAGTTCTTGAAATCAAAGTGCTTAAAATT
CCATTTTCTCCTTGCTCTAGCCCACGATTTTTATATTTAAAAATTTTTTGAATATTTGAG
TTGTTCAAAATATTTAAAATCTGTGGATTATCATAAAAGACTAATTTAGGTGCTTATATA
TTTAATGATATGTTTATGGACATT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               201-364, gnl|bosTau2|chr10 (28741560-28741397)
               

               
               201-364, gnl|Hg17|chr14 (49868909-49868754)
               

               
               201-364, gnl|Mm7|chr12 (67689960-67689796)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               201-364, gnl|bosTau2|chr10 (28741560-28741397)
               

               
               201-364, gnl|Hg17|chr14 (49868909-49868754)
               

               
               201-364, gnl|Mm7|chr12 (67689960-67689796)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               kid (0.389206)
               

               
               gul (0.177588)
               

               
               spl (0.143184)
               

               
               bla (0.124347)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.389206)
               

               
               gul (0.177588)
               

               
               spl (0.143184)
               

               
               bla (0.124347)

	201-364, gnl\|bosTau2\|chr10 (28741560-28741397)
	201-364, gnl\|Hg17\|chr14 (49868909-49868754)
	201-364, gnl\|Mm7\|chr12 (67689960-67689796)