Non-Coding RNA Search

Ss1.1-Pig4-TMW8047M03.3

Sequence:


               
               CACTAAAGAGTTTGGACCTTAAGTGAGGGCAGCAGAGAACATATTCAGAGTGACATAAGA
CAAATGGCATCTTCAGTCACTGCGCCTGATACATAGAGAAGAGATTTAGAGGGATGAGAC
CAGAGACAGTCCACATGAGATCTGTAACAGAAAAGTCAAAATGGAGAAAAACTGACAGAC
AAGAGCTACTTAGTAATTAAAATTTTCAAATTGGCAACTGATGCGCTCTGGGGGAGAGGT
AGATTCCTGAATGAGGCTGGTTTAATCGCCTGAGTCCATGGTGGTTCCATTGATACGGTG
AGAAAAACAGGAAGGGGAGGAACAAGTTGTGCCAGAAGGAAGATGGAGATAGTCCCTAAG
AATGGCCAAGGGAATGGGCTTGGGAGTTGGGCTGTTTGCGTTTGCAGACAGCTTTGTCAT
TTCCTATGAGCTAAACAGGTCAGTTAATATTTATTGAGTATATACACGATACTTTATGAC
CTTGGGCAAATGATAAGCTATCTGAGCCTCAGTGTTTTCGGTTGAACAAAAGACAGTACC
TAGTATATAAACTTGTTTAGAGAGTAAAGTCACTTTGTAAAAGTGTTGACCCCCTTTTAA
GCCCTCAAGTGGTAGCTGCTAATCTTAGTTTGGGCTAAAATGAGACTAGACAATAGTTAA
AGGTCAGAGTTGTTCAGCCATAATCTAATGGAGGTTAGACTTGAGGTGTTTTTTTTTTTT
TTACAGGATTAAACCCATGGGACATAGAGGAGACAATCTCAGTTGAGCTGTAGGTGAAGG
GTCAGGAAGCAGGGCTTGATAGGAATTGTTTGAACTGCCACCTTTTAAACCAGTACTTTA
TGCTATGGTACGGAGATAAAGTTGCGGGGGATTTAGGGGACAGAGAGGGGAGGTACAGCA
CCTTACTTTGCTAGTATAAAGCTATCACTCCATTTTCCTTCAAGCAGAGCCAGCCAGATT
AAGACTTTTAAAGGTCCGGAACTTCAAAAACATGACCATGTACCATTCCCCCACCTTATG
TTCCTTAAACCAAAAGCAATAAGCTGTAAAATAAGTGTAACAAAGTCCAATAAAGTTTTT
ATTTTTTTTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACTAAAGAGTTTGGACCTTAAGTGAGGGCAGCAGAGAACATATTCAGAGTGACATAAGA
CAAATGGCATCTTCAGTCACTGCGCCTGATACATAGAGAAGAGATTTAGAGGGATGAGAC
CAGAGACAGTCCACATGAGATCTGTAACAGAAAAGTCAAAATGGAGAAAAACTGACAGAC
AAGAGCTACTTAGTAATTAAAATTTTCAAATTGGCAACTGATGCGCTCTGGGGGAGAGGT
AGATTCCTGAATGAGGCTGGTTTAATCGCCTGAGTCCATGGTGGTTCCATTGATACGGTG
AGAAAAACAGGAAGGGGAGGAACAAGTTGTGCCAGAAGGAAGATGGAGATAGTCCCTAAG
AATGGCCAAGGGAATGGGCTTGGGAGTTGGGCTGTTTGCGTTTGCAGACAGCTTTGTCAT
TTCCTATGAGCTAAACAGGTCAGTTAATATTTATTGAGTATATACACGATACTTTATGAC
CTTGGGCAAATGATAAGCTATCTGAGCCTCAGTGTTTTCGGTTGAACAAAAGACAGTACC
TAGTATATAAACTTGTTTAGAGAGTAAAGTCACTTTGTAAAAGTGTTGACCCCCTTTTAA
GCCCTCAAGTGGTAGCTGCTAATCTTAGTTTGGGCTAAAATGAGACTAGACAATAGTTAA
AGGTCAGAGTTGTTCAGCCATAATCTAATGGAGGTTAGACTTGAGGTGTTTTTTTTTTTT
TTACAGGATTAAACCCATGGGACATAGAGGAGACAATCTCAGTTGAGCTGTAGGTGAAGG
GTCAGGAAGCAGGGCTTGATAGGAATTGTTTGAACTGCCACCTTTTAAACCAGTACTTTA
TGCTATGGTACGGAGATAAAGTTGCGGGGGATTTAGGGGACAGAGAGGGGAGGTACAGCA
CCTTACTTTGCTAGTATAAAGCTATCACTCCATTTTCCTTCAAGCAGAGCCAGCCAGATT
AAGACTTTTAAAGGTCCGGAACTTCAAAAACATGACCATGTACCATTCCCCCACCTTATG
TTCCTTAAACCAAAAGCAATAAGCTGTAAAATAAGTGTAACAAAGTCCAATAAAGTTTTT
ATTTTTTTTCCC

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               1-366, gnl|bosTau2|chr13 (56256013-56256372)
               

               
               1-366, gnl|Hg17|chr20 (42560871-42560156)
               


               
               375-1088, gnl|bosTau2|chr13 (56256356-56257046)
               

               
               375-1088, gnl|Hg17|chr20 (42560194-42559503)
               

               
               375-1088, gnl|Mm7|chr2 (163364785-163364166)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-366, gnl|bosTau2|chr13 (56256013-56256372)
               

               
               1-366, gnl|Hg17|chr20 (42560871-42560156)
               


               
               375-1088, gnl|bosTau2|chr13 (56256356-56257046)
               

               
               375-1088, gnl|Hg17|chr20 (42560194-42559503)
               

               
               375-1088, gnl|Mm7|chr2 (163364785-163364166)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fat (0.147427)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.147427)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

	1-366, gnl\|bosTau2\|chr13 (56256013-56256372)
	1-366, gnl\|Hg17\|chr20 (42560871-42560156)

	375-1088, gnl\|bosTau2\|chr13 (56256356-56257046)
	375-1088, gnl\|Hg17\|chr20 (42560194-42559503)
	375-1088, gnl\|Mm7\|chr2 (163364785-163364166)