Non-Coding RNA Search

Ss1.1-Pig4-TMW8047M07.5

Sequence:


               
               GCGGACTGCAGGTGGAGCCCTACTACCCCAGAGGCCTGAAGGACTGGGGGGGTGTCCCTG
AGGAGGTCATGGGCGCTTTGCCCAGGCCCGACGGCTCCATCATCTTCTTCAGAGACGACC
GCTACTGGCGCCTTGACCAGAACAAACTTCAGGCAACTGCCTCGGGCCGCTGGGCCACAG
AGCTGCCCTGGATGGGCTGCTGGCACGCCAACTCTGGGGGCGCCCTGTTCTGAAGATGCC
CCCCCACCTCAAAGTGAATGGCTGGTGCCTTCACCATCAACTTGTGTCCCCTGCCCCAAG
GGTGGACTCTGGAAGCCTCTGAGCCTCCCTGCAGAAGCCCAGGCAGGAAAGTTTCTCTGC
ATTTGTTCCCTGGAGAATGCCTTGATCAAAGACTGATCTTTGTGGGGACAATCCAATGAG
AAGCCAAAAAGGGTCCCAGAACCCATGGCCCTTTCCCCAAGGACTGTTTCCAACCCCATG
CCTTGGGGATTTTGTTTCTTCACCTAAAGATGCAATTTCTGTCCCTGAGGCCAGAGCACA
GGGCAACCAGAAAGGATGCAAAACTCAACGGAGAGGCTGGTGTCACTTTGCAGAACTGTC
CCTTCCCCTCGGACCTCCTGGTTCAGTCCTTGGAGAATTGTCTCTTTTTTTAGGGCCGCA
CTCTCGGCATATGGAGGTTCCCAGGTTAGGGGTCGAATCAGAGCTACAGCTGCTGGCCTA
CACCACAGCCACAGCAACGCGGGATCAGACCCACATCTGGAACCTACAACCACAACTCAC
GGCCACGCCCGATCCTTAACCTGCTGAGTGAGGCCAGGGATCGAACCCACAACCTCATGT
TAGTTGGGTTCCTTAACCACTGAGCCATGATGGGAACTTCAGAATTGTCTTATTTAATCA
GAGGCCCTATCCCCCAGGAAGCTTGGATGTGTTGGGTACAAGGCTCTCCAATTTCAGGGG
GTCAGGACCAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGACTGCAGGTGGAGCCCTACTACCCCAGAGGCCTGAAGGACTGGGGGGGTGTCCCTG
AGGAGGTCATGGGCGCTTTGCCCAGGCCCGACGGCTCCATCATCTTCTTCAGAGACGACC
GCTACTGGCGCCTTGACCAGAACAAACTTCAGGCAACTGCCTCGGGCCGCTGGGCCACAG
AGCTGCCCTGGATGGGCTGCTGGCACGCCAACTCTGGGGGCGCCCTGTTCTGAAGATGCC
CCCCCACCTCAAAGTGAATGGCTGGTGCCTTCACCATCAACTTGTGTCCCCTGCCCCAAG
GGTGGACTCTGGAAGCCTCTGAGCCTCCCTGCAGAAGCCCAGGCAGGAAAGTTTCTCTGC
ATTTGTTCCCTGGAGAATGCCTTGATCAAAGACTGATCTTTGTGGGGACAATCCAATGAG
AAGCCAAAAAGGGTCCCAGAACCCATGGCCCTTTCCCCAAGGACTGTTTCCAACCCCATG
CCTTGGGGATTTTGTTTCTTCACCTAAAGATGCAATTTCTGTCCCTGAGGCCAGAGCACA
GGGCAACCAGAAAGGATGCAAAACTCAACGGAGAGGCTGGTGTCACTTTGCAGAACTGTC
CCTTCCCCTCGGACCTCCTGGTTCAGTCCTTGGAGAATTGTCTCTTTTTTTAGGGCCGCA
CTCTCGGCATATGGAGGTTCCCAGGTTAGGGGTCGAATCAGAGCTACAGCTGCTGGCCTA
CACCACAGCCACAGCAACGCGGGATCAGACCCACATCTGGAACCTACAACCACAACTCAC
GGCCACGCCCGATCCTTAACCTGCTGAGTGAGGCCAGGGATCGAACCCACAACCTCATGT
TAGTTGGGTTCCTTAACCACTGAGCCATGATGGGAACTTCAGAATTGTCTTATTTAATCA
GAGGCCCTATCCCCCAGGAAGCTTGGATGTGTTGGGTACAAGGCTCTCCAATTTCAGGGG
GTCAGGACCAGA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               202-379, + strand, RNAz p=0.97598
               

               
               433-545, - strand, RNAz p=0.622518

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               202-379, + strand, RNAz p=0.97598
               

               
               433-545, - strand, RNAz p=0.622518

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               3-379, gnl|bosTau2|chr19 (7989300-7989663)
               

               
               3-379, gnl|Hg17|chr17 (31117862-31117470)
               


               
               394-650, gnl|bosTau2|chr19 (7989787-7990041)
               

               
               394-650, gnl|Hg17|chr17 (31117429-31117184)
               

               
               394-650, gnl|Mm7|chr11 (83512339-83512085)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-379, gnl|bosTau2|chr19 (7989300-7989663)
               

               
               3-379, gnl|Hg17|chr17 (31117862-31117470)
               


               
               394-650, gnl|bosTau2|chr19 (7989787-7990041)
               

               
               394-650, gnl|Hg17|chr17 (31117429-31117184)
               

               
               394-650, gnl|Mm7|chr11 (83512339-83512085)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               nlu (0.191681)
               

               
               cst (0.140036)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               cst (0.140036)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

	202-379, + strand, RNAz p=0.97598
	433-545, - strand, RNAz p=0.622518

	3-379, gnl\|bosTau2\|chr19 (7989300-7989663)
	3-379, gnl\|Hg17\|chr17 (31117862-31117470)

	394-650, gnl\|bosTau2\|chr19 (7989787-7990041)
	394-650, gnl\|Hg17\|chr17 (31117429-31117184)
	394-650, gnl\|Mm7\|chr11 (83512339-83512085)