Non-Coding RNA Search

Ss1.1-Pig4-TMW8047M08.5

Sequence:


               
               AATGGCGGAGACGCTGAGGCGGGTGCTAAACTCTGGCAGCGCGGCCGGCCCCGCGGAGGA
GAGCACGGCTGAGGCCGGACCGCCTTTGCTGCTGCTTGGCGGTCCAGGCTCTGGAAAGAC
AGCACTGCTATTCGCGGCGGCCCTGGAGACGGCAGGAGAGGGCCAAGGCCCCGTACTCTT
CCTCACCCGGAGGCCTCTGCAAAGCTTGCCCCGCGGGACCCGAGCAGCGCTGGAACCCCT
GCGGTTACAGAAAATCCGCTTCCAGTATCCACCCTCAACCCTTGAGCTCCTCCGGCTCCT
GTGCTCTGCGCATGAGGCCAGGGGGGCAGCGCCCTCCCTCCTGCTGCTCGATGGCCTGGA
GGAGTACCTAACAGAAGACCTTGGGCCCCAGGAAGCCGCCTACCTGGCCGCCCTGCTTGT
GGACACAGCTGCCCACTTCAGCCACCAGGGTGGGCCTGGCCAGGGCTGTGGGCTCATTGT
GGCTCTCCAGACCCAGGAGGAAGGAGACAGTGGGGATGCCCAGCCACTGGCGCTGCTCCA
GAGGTATTTCCCTGCCCAGTGCTGGCTGCAGCCCAATGCATCAGGCCCAGGACAGCACTG
CCTCCGAGCCTGCCTGGAGCCAGGCGGGCTGGAACCCAGGGCAGAGTGGTGGGTGACTTT
CCAACCGGATGGAGAGATGACGGTCACACAGTGGCCCACCCAGGCTGGTGACACTGGCTC
ACACAAGGGTTCAAGCTCTGAAGGGCAGTCTTGAGCTTTGGTGTGTGACAACCTCTCTAT
GCCTAAGTTTCCCATGGCTGGAATACCTACCTCAGAGACATGCAGATTCAAAGACTTAAA
GATTGTAAAGTGCTTTTTCTCTCATAAACATAGCATTTTCATGTACATATTGTGCCCAGT
CAACAAATTGTTTAATTTTGCTGTTTTGAACTTTAAAAAGTTTCATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATGGCGGAGACGCTGAGGCGGGTGCTAAACTCTGGCAGCGCGGCCGGCCCCGCGGAGGA
GAGCACGGCTGAGGCCGGACCGCCTTTGCTGCTGCTTGGCGGTCCAGGCTCTGGAAAGAC
AGCACTGCTATTCGCGGCGGCCCTGGAGACGGCAGGAGAGGGCCAAGGCCCCGTACTCTT
CCTCACCCGGAGGCCTCTGCAAAGCTTGCCCCGCGGGACCCGAGCAGCGCTGGAACCCCT
GCGGTTACAGAAAATCCGCTTCCAGTATCCACCCTCAACCCTTGAGCTCCTCCGGCTCCT
GTGCTCTGCGCATGAGGCCAGGGGGGCAGCGCCCTCCCTCCTGCTGCTCGATGGCCTGGA
GGAGTACCTAACAGAAGACCTTGGGCCCCAGGAAGCCGCCTACCTGGCCGCCCTGCTTGT
GGACACAGCTGCCCACTTCAGCCACCAGGGTGGGCCTGGCCAGGGCTGTGGGCTCATTGT
GGCTCTCCAGACCCAGGAGGAAGGAGACAGTGGGGATGCCCAGCCACTGGCGCTGCTCCA
GAGGTATTTCCCTGCCCAGTGCTGGCTGCAGCCCAATGCATCAGGCCCAGGACAGCACTG
CCTCCGAGCCTGCCTGGAGCCAGGCGGGCTGGAACCCAGGGCAGAGTGGTGGGTGACTTT
CCAACCGGATGGAGAGATGACGGTCACACAGTGGCCCACCCAGGCTGGTGACACTGGCTC
ACACAAGGGTTCAAGCTCTGAAGGGCAGTCTTGAGCTTTGGTGTGTGACAACCTCTCTAT
GCCTAAGTTTCCCATGGCTGGAATACCTACCTCAGAGACATGCAGATTCAAAGACTTAAA
GATTGTAAAGTGCTTTTTCTCTCATAAACATAGCATTTTCATGTACATATTGTGCCCAGT
CAACAAATTGTTTAATTTTGCTGTTTTGAACTTTAAAAAGTTTCATGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6NVH7_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6NVH7_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               525-721, - strand, RNAz p=0.962397

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               525-721, - strand, RNAz p=0.962397

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               249-815, gnl|bosTau2|chr7 (11229301-11229867)
               

               
               249-815, gnl|Hg17|chr19 (11347187-11347753)
               

               
               249-815, gnl|Mm7|chr9 (21835073-21835642)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               249-815, gnl|bosTau2|chr7 (11229301-11229867)
               

               
               249-815, gnl|Hg17|chr19 (11347187-11347753)
               

               
               249-815, gnl|Mm7|chr9 (21835073-21835642)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               nca (0.273748)
               

               
               col (0.195008)
               

               
               eye (0.170503)
               

               
               ste (0.135208)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.273748)
               

               
               col (0.195008)
               

               
               eye (0.170503)
               

               
               ste (0.135208)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)

	249-815, gnl\|bosTau2\|chr7 (11229301-11229867)
	249-815, gnl\|Hg17\|chr19 (11347187-11347753)
	249-815, gnl\|Mm7\|chr9 (21835073-21835642)

	nca (0.273748)
	col (0.195008)
	eye (0.170503)
	ste (0.135208)
	pgl (0.118483)
	ebs (0.118301)