Non-Coding RNA Search

Ss1.1-Pig4-TMW8047M12.3

Sequence:


               
               CTTTGTGTAACACGCTTATACATTTTTGTTTCTTTTAAGGTAGAACAGGTTATTATTTTT
TGTTTTCTCATCTAATGCTTTTAGAAGAGGTAAATTTATCCCTCGACCACAGTGCCTTGC
CTCCCACCACCACCACTTGGTGAATGGGCATTAGATGCTGCACAGCCTTTAGGGCACTAT
TTTGGTAACTGTTAAAAGTTTATCCAGAAATTGTAGCTGCTGTTTTATTTTATTACATAT
TTATCCAACTTGTTCATGAATATTAACATGAGTTTGTCTGGAAGTAAGAATTGATTTGTT
CTTTAATTTACCATATATTTTTTTCTGGTATAAAATGAGCTGGAAATAAGCCTTATTGCT
AACTAATTAATTATGTAAACCCACCTAGACCCACAAGATTTCCTCCACACACTTCACTAC
ATGTATATTTATTTGGCTAGAAAGTGAGGCTGCTAGCATTACTAATTACAAATACTTTAC
TACACAGATTAACGGAACAAAATTCTTAGTGTTTTCAGGGAACTTAATCTATATGTCACC
ACCAAAGATTTCTACAGTGTTATAAAGTATGTAAATATTCCAAATTTCTGTAAAACTTTG
ATTAGATAAATATATTTTCTTTGGGTTTATTTTTTGAAATAACAGTTTGTGCTCTAGAAT
GCTTGAATTTTTGTGTTATTAAAAATAATATAACACTATCATATTAGATACCAGTAATTT
GTATTTTTAATTTGAATGGACTAAATTTTTATTTTGATTTTCTTTTATCACAACAGTAGG
TTAAGAAAAATACATAAATAATAAAATTTTAAAAAAGAAATGTTAAGGAGCTAATATGTA
TTGAAAAGTAATTTCTTACATTTTCTCCAGTCTAAGTTGGTTCATTTACAAAACAATTAG
GTTAATTTTGAAAAGATCATTGATATTGTGGTATGCAGTGTATAATTCTTAGTAAACATT
TAAGAGTAAAGCTTTCTGAAAGGAAATTACAGCTTTTTTCTCTTAACGTTTTTAAGATTT
ACTCTTCTAGTAGTATCCTACAGATTTAATGTACTGTTTAAACATTGAACATGAATTAAC
ATTTTCTCTTCTAACACTTTAAATCTATGTACTTTGTAGTTAAGAGAAAGCAGTTTTGCA
ATTTTTTAACCTCTTTGTAAAGGTTTTCTTTAGGCCTAGTGTGGGGATAATTTTACAAAT
GTGTTTTTTTGAAAACTTTAATATAAAATAAACTCATTTTATTAGTAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTGTGTAACACGCTTATACATTTTTGTTTCTTTTAAGGTAGAACAGGTTATTATTTTT
TGTTTTCTCATCTAATGCTTTTAGAAGAGGTAAATTTATCCCTCGACCACAGTGCCTTGC
CTCCCACCACCACCACTTGGTGAATGGGCATTAGATGCTGCACAGCCTTTAGGGCACTAT
TTTGGTAACTGTTAAAAGTTTATCCAGAAATTGTAGCTGCTGTTTTATTTTATTACATAT
TTATCCAACTTGTTCATGAATATTAACATGAGTTTGTCTGGAAGTAAGAATTGATTTGTT
CTTTAATTTACCATATATTTTTTTCTGGTATAAAATGAGCTGGAAATAAGCCTTATTGCT
AACTAATTAATTATGTAAACCCACCTAGACCCACAAGATTTCCTCCACACACTTCACTAC
ATGTATATTTATTTGGCTAGAAAGTGAGGCTGCTAGCATTACTAATTACAAATACTTTAC
TACACAGATTAACGGAACAAAATTCTTAGTGTTTTCAGGGAACTTAATCTATATGTCACC
ACCAAAGATTTCTACAGTGTTATAAAGTATGTAAATATTCCAAATTTCTGTAAAACTTTG
ATTAGATAAATATATTTTCTTTGGGTTTATTTTTTGAAATAACAGTTTGTGCTCTAGAAT
GCTTGAATTTTTGTGTTATTAAAAATAATATAACACTATCATATTAGATACCAGTAATTT
GTATTTTTAATTTGAATGGACTAAATTTTTATTTTGATTTTCTTTTATCACAACAGTAGG
TTAAGAAAAATACATAAATAATAAAATTTTAAAAAAGAAATGTTAAGGAGCTAATATGTA
TTGAAAAGTAATTTCTTACATTTTCTCCAGTCTAAGTTGGTTCATTTACAAAACAATTAG
GTTAATTTTGAAAAGATCATTGATATTGTGGTATGCAGTGTATAATTCTTAGTAAACATT
TAAGAGTAAAGCTTTCTGAAAGGAAATTACAGCTTTTTTCTCTTAACGTTTTTAAGATTT
ACTCTTCTAGTAGTATCCTACAGATTTAATGTACTGTTTAAACATTGAACATGAATTAAC
ATTTTCTCTTCTAACACTTTAAATCTATGTACTTTGTAGTTAAGAGAAAGCAGTTTTGCA
ATTTTTTAACCTCTTTGTAAAGGTTTTCTTTAGGCCTAGTGTGGGGATAATTTTACAAAT
GTGTTTTTTTGAAAACTTTAATATAAAATAAACTCATTTTATTAGTAAAAAAAAAAAAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               2-784, gnl|bosTau2|chr29 (19819703-19820486)
               

               
               2-784, gnl|Hg17|chr10 (65053086-65053908)
               

               
               2-784, gnl|Mm7|chr10 (66597662-66596634)
               


               
               829-1246, gnl|bosTau2|chr29 (19820481-19820899)
               

               
               829-1246, gnl|Hg17|chr10 (65053903-65054334)
               

               
               829-1246, gnl|Mm7|chr10 (66596639-66596232)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-784, gnl|bosTau2|chr29 (19819703-19820486)
               

               
               2-784, gnl|Hg17|chr10 (65053086-65053908)
               

               
               2-784, gnl|Mm7|chr10 (66597662-66596634)
               


               
               829-1246, gnl|bosTau2|chr29 (19820481-19820899)
               

               
               829-1246, gnl|Hg17|chr10 (65053903-65054334)
               

               
               829-1246, gnl|Mm7|chr10 (66596639-66596232)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

Help | Less info


               
               kid (0.518941)
               

               
               fco (0.314416)
               

               
               liv (0.292569)
               

               
               tra (0.246184)
               

               
               ldo (0.194005)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               ret (0.128733)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.518941)
               

               
               fco (0.314416)
               

               
               liv (0.292569)
               

               
               tra (0.246184)
               

               
               ldo (0.194005)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               ret (0.128733)

	2-784, gnl\|bosTau2\|chr29 (19819703-19820486)
	2-784, gnl\|Hg17\|chr10 (65053086-65053908)
	2-784, gnl\|Mm7\|chr10 (66597662-66596634)

	829-1246, gnl\|bosTau2\|chr29 (19820481-19820899)
	829-1246, gnl\|Hg17\|chr10 (65053903-65054334)
	829-1246, gnl\|Mm7\|chr10 (66596639-66596232)

	kid (0.518941)
	fco (0.314416)
	liv (0.292569)
	tra (0.246184)
	ldo (0.194005)
	nep (0.183925)
	fbs (0.175346)
	ret (0.128733)