Non-Coding RNA Search

Ss1.1-Pig4-TMW8047M15.5

Sequence:


               
               GACCTTGGGGGACTTACTTCTAACTCCGACCAGAATCTACAGCCATTCGCTGTTACCTGT
ACTACGCTCGGGACATGTTAAGGCCTTTGCCCATATTACTGGTGGAGGATTGCTGGAAAA
CATCCCCAGAGTCCTCCCTCAGAAATTTGGGGTGGATTTAGACGCCCGGACCTGGAGGAT
CCCCAGGATCTTCTCCTGGTTACAGCAGCTAGGACATCTCTCAGAAGAAGAGATGGCCAG
AACATTTAACTGTGGGATTGGGGCTGCCCTCGTGGTGTCAAAGGATCTGACAGAGCAGAT
TCTGCAAGATATTGAGCGGCATAAGGAAGAAGCCTGGGTGATTGGCAAGGTGGTAGCGTG
TCCTGAAGGTTCTCCTCATGTGAAAGTCAAGCATCTGATTGAAAGCATGCAAATAAATGG
ATCAGTGTTGGAGAATGGCACCCTGAAAAATCATTTCTCTGTTCAACCGAAAAAGGCAAG
AGTAGCTGTCTTAATATCTGGCACAGGATCGAACCTCCAAGCCCTCATCGAGAGCACTCA
GGCACCAAGTAGCTCTGCACACATCGTTGTTGTGATCTCCAACAAAGCAGCAGTGGCCGG
CTTAGATAAAGCAGCAAGAGCCGGCATCCCCACCAGGGTAATTAATCACAAATTATATAA
AGATCGTGTAGCATTCGACACGGCGGTTGACCAAGTCCTTGAAGAGTTCTCCACAGATAT
AGTCTGTCTTGCAGGATTCATGAGAATTTTATCTGGCCCCTTTGTTAGAAAATGGAATGG
GAAAATGCTCAACATCCACCCATCCTTGCTCCCTTCATTTAAGGGTTCAAATGCCCATGA
GCAAGTCCTGGATGCCGGGGTCACGGTCACTGGGTGCACTGTGCATTTCGTAGCTGAGGA
TGTCGATGCTGGTCAAATTGTTTTACAAGAAGCTGTTCCAGTGAAGAGGGGAGACACCAT
TGAAACTCTCTCTGAAAGAGTAAAATTAGCAGAGCATAAAATATTTCCCTCAGCCCTCCA
GCTGGTGGCCAGTGGCACTGTACAGCTTGGAGAAAATGGCAAGATCCGTTGGGTCAGAGA
GGAATGAAATGTCCTTGTCCAGGGATGGAGCCAGCTTTGAACAAATTCTGACCACTGCAG
AGTGGCTTTCCTCATGGACTCAGCCCTAAAAGATCCAAAGCATACCGGTACAGTCTCCAG
TGGTCTTGCAGGTTTTACCTGCGTGGGGCCTTCTTGGTTACAGTCAAACTGGTCATTCAG
AATTCCTTTTGCTCTCAGCCAAGCAGGATACCAAAACTTAATCTTAGGTTCTTTCTCATA
GAGTTAGTTAACAAGTCTAGGAAGTTAATAGCTCTTCCCCCATGTTGAGTATATCTATGC
CGATTTGAATTGAGATTTCGCTAATTATTCTCATCATAAGTTGGTGTCATAAAACTTCTG
GGGAGCTCCCACTTCTGAGGGTAGTATGCTTTGAAGTATCATTAAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACCTTGGGGGACTTACTTCTAACTCCGACCAGAATCTACAGCCATTCGCTGTTACCTGT
ACTACGCTCGGGACATGTTAAGGCCTTTGCCCATATTACTGGTGGAGGATTGCTGGAAAA
CATCCCCAGAGTCCTCCCTCAGAAATTTGGGGTGGATTTAGACGCCCGGACCTGGAGGAT
CCCCAGGATCTTCTCCTGGTTACAGCAGCTAGGACATCTCTCAGAAGAAGAGATGGCCAG
AACATTTAACTGTGGGATTGGGGCTGCCCTCGTGGTGTCAAAGGATCTGACAGAGCAGAT
TCTGCAAGATATTGAGCGGCATAAGGAAGAAGCCTGGGTGATTGGCAAGGTGGTAGCGTG
TCCTGAAGGTTCTCCTCATGTGAAAGTCAAGCATCTGATTGAAAGCATGCAAATAAATGG
ATCAGTGTTGGAGAATGGCACCCTGAAAAATCATTTCTCTGTTCAACCGAAAAAGGCAAG
AGTAGCTGTCTTAATATCTGGCACAGGATCGAACCTCCAAGCCCTCATCGAGAGCACTCA
GGCACCAAGTAGCTCTGCACACATCGTTGTTGTGATCTCCAACAAAGCAGCAGTGGCCGG
CTTAGATAAAGCAGCAAGAGCCGGCATCCCCACCAGGGTAATTAATCACAAATTATATAA
AGATCGTGTAGCATTCGACACGGCGGTTGACCAAGTCCTTGAAGAGTTCTCCACAGATAT
AGTCTGTCTTGCAGGATTCATGAGAATTTTATCTGGCCCCTTTGTTAGAAAATGGAATGG
GAAAATGCTCAACATCCACCCATCCTTGCTCCCTTCATTTAAGGGTTCAAATGCCCATGA
GCAAGTCCTGGATGCCGGGGTCACGGTCACTGGGTGCACTGTGCATTTCGTAGCTGAGGA
TGTCGATGCTGGTCAAATTGTTTTACAAGAAGCTGTTCCAGTGAAGAGGGGAGACACCAT
TGAAACTCTCTCTGAAAGAGTAAAATTAGCAGAGCATAAAATATTTCCCTCAGCCCTCCA
GCTGGTGGCCAGTGGCACTGTACAGCTTGGAGAAAATGGCAAGATCCGTTGGGTCAGAGA
GGAATGAAATGTCCTTGTCCAGGGATGGAGCCAGCTTTGAACAAATTCTGACCACTGCAG
AGTGGCTTTCCTCATGGACTCAGCCCTAAAAGATCCAAAGCATACCGGTACAGTCTCCAG
TGGTCTTGCAGGTTTTACCTGCGTGGGGCCTTCTTGGTTACAGTCAAACTGGTCATTCAG
AATTCCTTTTGCTCTCAGCCAAGCAGGATACCAAAACTTAATCTTAGGTTCTTTCTCATA
GAGTTAGTTAACAAGTCTAGGAAGTTAATAGCTCTTCCCCCATGTTGAGTATATCTATGC
CGATTTGAATTGAGATTTCGCTAATTATTCTCATCATAAGTTGGTGTCATAAAACTTCTG
GGGAGCTCCCACTTCTGAGGGTAGTATGCTTTGAAGTATCATTAAACT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61871028|ref|XP_615302.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61871028|ref|XP_615302.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               157-273, + strand, RNAz p=0.549135

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               157-273, + strand, RNAz p=0.549135

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               157-377, gnl|bosTau2|chr1 (1269025-1268806)
               

               
               157-377, gnl|Hg17|chr21 (33805643-33805423)
               

               
               157-377, gnl|Mm7|chr16 (91675871-91675652)
               


               
               637-783, gnl|bosTau2|chr1 (1266226-1266080)
               

               
               637-783, gnl|Hg17|chr21 (33799880-33799734)
               

               
               637-783, gnl|Mm7|chr16 (91673381-91673235)
               


               
               896-1488, gnl|bosTau2|chr1 (1265228-1264642)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               157-377, gnl|bosTau2|chr1 (1269025-1268806)
               

               
               157-377, gnl|Hg17|chr21 (33805643-33805423)
               

               
               157-377, gnl|Mm7|chr16 (91675871-91675652)
               


               
               637-783, gnl|bosTau2|chr1 (1266226-1266080)
               

               
               637-783, gnl|Hg17|chr21 (33799880-33799734)
               

               
               637-783, gnl|Mm7|chr16 (91673381-91673235)
               


               
               896-1488, gnl|bosTau2|chr1 (1265228-1264642)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ece (0.229305)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               eru (0.120048)
               

               
               cty (0.10408)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               eru (0.120048)
               

               
               cty (0.10408)

	157-377, gnl\|bosTau2\|chr1 (1269025-1268806)
	157-377, gnl\|Hg17\|chr21 (33805643-33805423)
	157-377, gnl\|Mm7\|chr16 (91675871-91675652)

	637-783, gnl\|bosTau2\|chr1 (1266226-1266080)
	637-783, gnl\|Hg17\|chr21 (33799880-33799734)
	637-783, gnl\|Mm7\|chr16 (91673381-91673235)

	896-1488, gnl\|bosTau2\|chr1 (1265228-1264642)

	ece (0.229305)
	spl (0.143184)
	ste (0.135208)
	eru (0.120048)
	cty (0.10408)