Non-Coding RNA Search

Ss1.1-Pig4-TMW8047M19.3

Sequence:


               
               ACAGAATGAACTGAAAAACTCACTTGAAAAAGAGAAGGAGACTTCTCATCAGTTGAAATT
GGAGATCAATTCAATGCAGGGACAACTAACGCAGGCCCAGAACAGTTTAAAACAAAAGGA
AAAAGAAGAACAACAACTTCAGGGTAACATAAATGAGTTAAAGCAACTGACCGAACAGAA
GAAAAAGCAAATTGAAGCACTCCAAGGAGAGGTTAAAATTGCTGTTTCACAGAAGACAGA
ACTTGAGAATAAACTACAGCAGCAGTCAACACAAGCAGCACAGGAACTTGCAGCAGAGAA
AGAGAAAATATCAGTGTTACAAAATGCCTATGAAAAAAATCAGGAAAATCTAAAGCAGCT
TCAGTCTGATTTCTATGGGAAGGAATCTGAACTTCTTGCCACAAGGCAAGATCTCAAGTC
TGTAGAAGAGAAGCTTTCTCTAGCACAGGAGGACTTGATTTCAAACAGGAATCAAATTGG
AAACCAAAATAAATTGATTCAAGAACTGAAGACTGCCAGGACTACTTTGGAGCAAGATTC
AGCCAAGAAAGAAGAGCAGTTGAAGGAGCAGTGTAAAGCACTACAAGATGTTCAGAAAGA
AAAGTCACTGAAAGAAAAAGAACTAGTAAATGAAAAATCTAAATTGGCAGAGATTGAGGA
AATTAAATGTAGACAAGAAAAAGAAATTGCTAAATTGAGTGAAGAACTCAAGTCTCACAA
GCAAGAAAGCATAAAGGAGGTAACAAATCTCAAGGATGCCAGACAGCTTCTGATTCAACA
GAAATTAGAGCTTCAAGGGAAAGTAGATTCCCTGAAGGCAACCCTTGAACAAGAGAAGAA
AAACCAGCAAATGTTAAAAGAGCAGATGAAAAAGGAAGAAGATGAGCTGAAGAGAGAATT
TATGGAGAAGGAAACTAAACTGCATTCTGAAATAAAAGAAAAAGCAGCAGCAGTGCAGAA
GCATGAGGAAAACGAGGCGAAACGTACCATGCAGATGACCGCATTAAACGAAAACCTGGG
CACGGTCAAGAAGGAGTGGCAGTCCAGCCAGCGGCGCGTCAGTGAGCTCGAGAAGCAGAC
GGACGACTTACGGGGAGAAATCGCAGTGCTGGAAGCCACCGTTCAGAATAATCAAGATGA
AAGAAGGGCACTACTAGAAAGGTGTCTTAAAGGAGAAGGTGAAATAGAAAAGCTTCAAAC
CAAAGTACTAGAGTTGCAAAGAAAGCTGGATAATACAACTGCAGCAGTGCAGGAGCTGGG
CAGAGAGAATCAGTCCCTTCAGATCAAGCATACACAAGCACTGAACAGAAAGTGGGCCGA
AGACAATGAAGTGCAGAACTGCATGGCCTGTGGGAAAGGCTTCTCAGTCACAGTGCGACG
GCATCACTGCAGACAATGTGGAAATATCTTCTGTGCTGAGTGTTCAGCCAAAAATGCCTT
AACTCCTTCTTCTAAGAAGCCTGTTCGTGTCTGTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGAATGAACTGAAAAACTCACTTGAAAAAGAGAAGGAGACTTCTCATCAGTTGAAATT
GGAGATCAATTCAATGCAGGGACAACTAACGCAGGCCCAGAACAGTTTAAAACAAAAGGA
AAAAGAAGAACAACAACTTCAGGGTAACATAAATGAGTTAAAGCAACTGACCGAACAGAA
GAAAAAGCAAATTGAAGCACTCCAAGGAGAGGTTAAAATTGCTGTTTCACAGAAGACAGA
ACTTGAGAATAAACTACAGCAGCAGTCAACACAAGCAGCACAGGAACTTGCAGCAGAGAA
AGAGAAAATATCAGTGTTACAAAATGCCTATGAAAAAAATCAGGAAAATCTAAAGCAGCT
TCAGTCTGATTTCTATGGGAAGGAATCTGAACTTCTTGCCACAAGGCAAGATCTCAAGTC
TGTAGAAGAGAAGCTTTCTCTAGCACAGGAGGACTTGATTTCAAACAGGAATCAAATTGG
AAACCAAAATAAATTGATTCAAGAACTGAAGACTGCCAGGACTACTTTGGAGCAAGATTC
AGCCAAGAAAGAAGAGCAGTTGAAGGAGCAGTGTAAAGCACTACAAGATGTTCAGAAAGA
AAAGTCACTGAAAGAAAAAGAACTAGTAAATGAAAAATCTAAATTGGCAGAGATTGAGGA
AATTAAATGTAGACAAGAAAAAGAAATTGCTAAATTGAGTGAAGAACTCAAGTCTCACAA
GCAAGAAAGCATAAAGGAGGTAACAAATCTCAAGGATGCCAGACAGCTTCTGATTCAACA
GAAATTAGAGCTTCAAGGGAAAGTAGATTCCCTGAAGGCAACCCTTGAACAAGAGAAGAA
AAACCAGCAAATGTTAAAAGAGCAGATGAAAAAGGAAGAAGATGAGCTGAAGAGAGAATT
TATGGAGAAGGAAACTAAACTGCATTCTGAAATAAAAGAAAAAGCAGCAGCAGTGCAGAA
GCATGAGGAAAACGAGGCGAAACGTACCATGCAGATGACCGCATTAAACGAAAACCTGGG
CACGGTCAAGAAGGAGTGGCAGTCCAGCCAGCGGCGCGTCAGTGAGCTCGAGAAGCAGAC
GGACGACTTACGGGGAGAAATCGCAGTGCTGGAAGCCACCGTTCAGAATAATCAAGATGA
AAGAAGGGCACTACTAGAAAGGTGTCTTAAAGGAGAAGGTGAAATAGAAAAGCTTCAAAC
CAAAGTACTAGAGTTGCAAAGAAAGCTGGATAATACAACTGCAGCAGTGCAGGAGCTGGG
CAGAGAGAATCAGTCCCTTCAGATCAAGCATACACAAGCACTGAACAGAAAGTGGGCCGA
AGACAATGAAGTGCAGAACTGCATGGCCTGTGGGAAAGGCTTCTCAGTCACAGTGCGACG
GCATCACTGCAGACAATGTGGAAATATCTTCTGTGCTGAGTGTTCAGCCAAAAATGCCTT
AACTCCTTCTTCTAAGAAGCCTGTTCGTGTCTGTGA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               39-235, gnl|bosTau2|chr16 (34456739-34456935)
               

               
               39-235, gnl|Hg17|chr12 (91695332-91695136)
               

               
               39-235, gnl|Mm7|chr10 (95590878-95591074)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               39-235, gnl|bosTau2|chr16 (34456739-34456935)
               

               
               39-235, gnl|Hg17|chr12 (91695332-91695136)
               

               
               39-235, gnl|Mm7|chr10 (95590878-95591074)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               cte (0.58548)
               

               
               pan (0.23596)
               

               
               tra (0.123092)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.58548)
               

               
               pan (0.23596)
               

               
               tra (0.123092)

	39-235, gnl\|bosTau2\|chr16 (34456739-34456935)
	39-235, gnl\|Hg17\|chr12 (91695332-91695136)
	39-235, gnl\|Mm7\|chr10 (95590878-95591074)