Non-Coding RNA Search

Ss1.1-Pig4-TMW8047M24.5

Sequence:


               
               CCAGGCCTGAGGGGAGGAGAGCATCATCACTTTCCATTAGCTGTGTTGGCTTGCAGGTCA
CATTTTTACTACCAGCTTTAGATAAATACCCAACCCCCCGCAGGTTTGTAGATTAATTTT
TATTAAGGAGTGATAACAAAAGTTCTTGCAGAGTCAGGGTGCTTTTATATATGAGAGCAG
CAGCCTTTGTAGAGTGTGGTGTATGAGAATCTATGAGATACTTCTTTACAGTTCACCAAA
GAAATGGGTCACCTGTGCCGATCTGCTCTTTTGTTTGGACCTTTATACAGGGTTTCTAGG
GCATTGTCCCTACCCCATCTCCACCTTAATTCCATTCCTTCCACACCCAGCTAAAGCTAA
AGAGGAGATCTGTACAGGATCTATTTTAGATTAGGGTTAACTATTTGCATCAAATTAAGA
TACACAAATGACAACAGATGTTGCCTTAGCCTTAAAAATTACTACTAGTTTCCAGCCACC
TCACTCCAGGTATGGAAGGATCTGATTTGAATTTGTCAAGGCAGTTCCTTTTGAGAGCGG
GATCCTCCAGGCTTAATCCAAGGCAGCTAATTCTGGCCCTGAAGGAGCAGCTAGGAGAAC
CTGAGGCTTGTTCTTGAAGTGGGCAGGCTGGCCAAAATCTTCGAATAGCGCAGAACCAAA
CCAAGGGTGTGTTCCCGGCCTTCTCTAGTGAAGGGTCTCCAGGCAGAGGACCAAGAAGAC
CCCACTTCGTGCCCTAGGCTCTTGGAGAGGAAGGGGTATACCTGAAATTAGAAAGGGAGC
TACATACGGAACTCAGTGGCTCTGTATTCAAAAGGGAAAATGTTTCCACGTTGCTTTTTA
GAGTTCAAATCAACATCCTTCTGGATAAATATATTTTTTAACAGAATCTTTTTATTATTT
TTAAAAGATATAAAACCGACTACCCCCATCAATAGCAATACAAGGTTATACATCTTAACC
AGATTTTTCTCAGGCCTTTTTTGGATACCTTTAGTAGTTAACTATTTTGTCTAACCCTTC
TGTAAATAACCATCGTACAACATGGAGAAGCCTGGGGAATACAGCCGAGGGCACCTCACT
CCACCTGGCGCACGTATTCATTCCCACAGGCTGCACTGAAATCACCTAGCGACAACATCC
TCTCCTGTTTTGCATCCATTTCCTACCTGTTGCGCTGCTTTCGGGATGGGACAGGAAGCA
AAGTACCGTTCCAGTTGACGTCTGTATATACAGTTAGCGTTGCCAGGGAAACGTTCCCAG
TCACAAAGAATTGTGCTTTTGATTCCATGGAACCATCTGGCTTTCTTGTCATGGTCTGAC
CAAAATTCCTTCTCTGCATACAAGGCCAGTATACGCAGCATCACAGTCGTTTCAGATACT
CAGCTTGGCATTCCGTTTACTCAGCGTTTACCGTGAGCGGGCACACATCTTGGGAATGGC
TGCAGTTAGGCCACATAGTTTACTCACTAAGTGAACAGAGGTGATTTCTGTGTTTGCATT
CCATTGTTCTGCTCCCCTATGTCTTTGCCTTTCTCCCTGGGAAGTCAGTGAAAAAGGGAC
TGAGCTTTGTGTCACCACACAGCATTTTCCACTTATGTGTTCAATCTCTTAAAAGACAAA
TAAAGACTGCTTCCTTAGAGGGTGGCTCGTACGGTAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGGCCTGAGGGGAGGAGAGCATCATCACTTTCCATTAGCTGTGTTGGCTTGCAGGTCA
CATTTTTACTACCAGCTTTAGATAAATACCCAACCCCCCGCAGGTTTGTAGATTAATTTT
TATTAAGGAGTGATAACAAAAGTTCTTGCAGAGTCAGGGTGCTTTTATATATGAGAGCAG
CAGCCTTTGTAGAGTGTGGTGTATGAGAATCTATGAGATACTTCTTTACAGTTCACCAAA
GAAATGGGTCACCTGTGCCGATCTGCTCTTTTGTTTGGACCTTTATACAGGGTTTCTAGG
GCATTGTCCCTACCCCATCTCCACCTTAATTCCATTCCTTCCACACCCAGCTAAAGCTAA
AGAGGAGATCTGTACAGGATCTATTTTAGATTAGGGTTAACTATTTGCATCAAATTAAGA
TACACAAATGACAACAGATGTTGCCTTAGCCTTAAAAATTACTACTAGTTTCCAGCCACC
TCACTCCAGGTATGGAAGGATCTGATTTGAATTTGTCAAGGCAGTTCCTTTTGAGAGCGG
GATCCTCCAGGCTTAATCCAAGGCAGCTAATTCTGGCCCTGAAGGAGCAGCTAGGAGAAC
CTGAGGCTTGTTCTTGAAGTGGGCAGGCTGGCCAAAATCTTCGAATAGCGCAGAACCAAA
CCAAGGGTGTGTTCCCGGCCTTCTCTAGTGAAGGGTCTCCAGGCAGAGGACCAAGAAGAC
CCCACTTCGTGCCCTAGGCTCTTGGAGAGGAAGGGGTATACCTGAAATTAGAAAGGGAGC
TACATACGGAACTCAGTGGCTCTGTATTCAAAAGGGAAAATGTTTCCACGTTGCTTTTTA
GAGTTCAAATCAACATCCTTCTGGATAAATATATTTTTTAACAGAATCTTTTTATTATTT
TTAAAAGATATAAAACCGACTACCCCCATCAATAGCAATACAAGGTTATACATCTTAACC
AGATTTTTCTCAGGCCTTTTTTGGATACCTTTAGTAGTTAACTATTTTGTCTAACCCTTC
TGTAAATAACCATCGTACAACATGGAGAAGCCTGGGGAATACAGCCGAGGGCACCTCACT
CCACCTGGCGCACGTATTCATTCCCACAGGCTGCACTGAAATCACCTAGCGACAACATCC
TCTCCTGTTTTGCATCCATTTCCTACCTGTTGCGCTGCTTTCGGGATGGGACAGGAAGCA
AAGTACCGTTCCAGTTGACGTCTGTATATACAGTTAGCGTTGCCAGGGAAACGTTCCCAG
TCACAAAGAATTGTGCTTTTGATTCCATGGAACCATCTGGCTTTCTTGTCATGGTCTGAC
CAAAATTCCTTCTCTGCATACAAGGCCAGTATACGCAGCATCACAGTCGTTTCAGATACT
CAGCTTGGCATTCCGTTTACTCAGCGTTTACCGTGAGCGGGCACACATCTTGGGAATGGC
TGCAGTTAGGCCACATAGTTTACTCACTAAGTGAACAGAGGTGATTTCTGTGTTTGCATT
CCATTGTTCTGCTCCCCTATGTCTTTGCCTTTCTCCCTGGGAAGTCAGTGAAAAAGGGAC
TGAGCTTTGTGTCACCACACAGCATTTTCCACTTATGTGTTCAATCTCTTAAAAGACAAA
TAAAGACTGCTTCCTTAGAGGGTGGCTCGTACGGTAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               518-633, + strand, RNAz p=0.618263

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               518-633, + strand, RNAz p=0.618263

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of NM_033121, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_033121, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               96-1652, gnl|bosTau2|chr17 (36024556-36026102)
               

               
               96-1652, gnl|Hg17|chr12 (108938390-108939953)
               

               
               96-1652, gnl|Mm7|chr5 (114025532-114027033)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               96-1652, gnl|bosTau2|chr17 (36024556-36026102)
               

               
               96-1652, gnl|Hg17|chr12 (108938390-108939953)
               

               
               96-1652, gnl|Mm7|chr5 (114025532-114027033)

Expressed library(ies): 25 entry(ies)

More info

Expressed library(ies): 25 entry(ies)

Help | Less info


               
               cbl (1.03318)
               

               
               amn (0.835422)
               

               
               duo (0.518403)
               

               
               nco (0.485201)
               

               
               ute (0.398353)
               

               
               fcc (0.39557)
               

               
               fbs (0.350693)
               

               
               nms (0.213858)
               

               
               sto (0.179824)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               nbm (0.0993246)

Expressed library(ies): 25 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (1.03318)
               

               
               amn (0.835422)
               

               
               duo (0.518403)
               

               
               nco (0.485201)
               

               
               ute (0.398353)
               

               
               fcc (0.39557)
               

               
               fbs (0.350693)
               

               
               nms (0.213858)
               

               
               sto (0.179824)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               nbm (0.0993246)

	96-1652, gnl\|bosTau2\|chr17 (36024556-36026102)
	96-1652, gnl\|Hg17\|chr12 (108938390-108939953)
	96-1652, gnl\|Mm7\|chr5 (114025532-114027033)

	cbl (1.03318)
	amn (0.835422)
	duo (0.518403)
	nco (0.485201)
	ute (0.398353)
	fcc (0.39557)
	fbs (0.350693)
	nms (0.213858)
	sto (0.179824)
	fhi (0.169578)
	mga (0.160205)
	ski (0.146735)
	spl (0.143184)
	lnt (0.142308)
	nca (0.136874)
	ste (0.135208)
	pla (0.133672)
	kid (0.129735)
	ova (0.129132)
	ret (0.128733)
	sug (0.127291)
	thg (0.126791)
	eru (0.120048)
	pgl (0.118483)
	nbm (0.0993246)