Non-Coding RNA Search

Ss1.1-Pig4-TMW8047O03.5

Sequence:


               
               TTGTTTAATTTTTCTTTTCTAGCTTGGCATCGCGGGCCAGTTCGCACGTTCTAATCGACT
TTCGTGTTGGCGGTCTGGCTCCGCAGGGCAGGGGGCGCTGAGTATGTCCCAGAGAAGGTG
TTTTGTTTAATTTTTCTTTTCTAGCTTGGCATCGCGGGCCAGTTCGCACGTTCTAATCGA
CTGAGGCCATGTCAGGAGACGGAGCCACGGAGCAGGCAGCTGAGTATGTCCCAGAGAAGG
TGAAGAAAGCCGAAAAGAAATTAGAAGAGAATCCCTATGACCTTGACGCTTGGAGCATTC
TCATTCGAGAGGCACAGAATCAACCTATAGACAAAGCACGGAAGACTTATGAACGCCTTG
TTGCCCAGTTCCCCAGTTCTGGCAGATTCTGGAAACTGTACATTGAAGCAGAGGTTAATA
TTTTATTTTACTTTTTCTTATATAGTATTTGATGGGAATTGCAGCATACACTATAGTGTT
AGAAAACAAATTAGGAACATAGATAGCAAAACTAGGACAAGGAGGATTTAAATGTCTTTT
GCCTTTATTTTGTAAAATAGGTATGAAGGAGTAATTAAAATGAATTTTTGAAATATGGGT
CTTTACAAGCTGATGATTGTTGCATTTTGGAGTTGCAACAACATTAAAACAGTTTCAATG
CTTATGCAGAAAATCAGAGAATAACAGCTGTTAGAAGAGTTTATCAACGAGGTTGTGTTA
ATCCAATGATCAACATTGAACAACTGTGGCGAGACTATAACAAGTATGAAGAGGGTATCA
ATATTCATTTAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGTTTAATTTTTCTTTTCTAGCTTGGCATCGCGGGCCAGTTCGCACGTTCTAATCGACT
TTCGTGTTGGCGGTCTGGCTCCGCAGGGCAGGGGGCGCTGAGTATGTCCCAGAGAAGGTG
TTTTGTTTAATTTTTCTTTTCTAGCTTGGCATCGCGGGCCAGTTCGCACGTTCTAATCGA
CTGAGGCCATGTCAGGAGACGGAGCCACGGAGCAGGCAGCTGAGTATGTCCCAGAGAAGG
TGAAGAAAGCCGAAAAGAAATTAGAAGAGAATCCCTATGACCTTGACGCTTGGAGCATTC
TCATTCGAGAGGCACAGAATCAACCTATAGACAAAGCACGGAAGACTTATGAACGCCTTG
TTGCCCAGTTCCCCAGTTCTGGCAGATTCTGGAAACTGTACATTGAAGCAGAGGTTAATA
TTTTATTTTACTTTTTCTTATATAGTATTTGATGGGAATTGCAGCATACACTATAGTGTT
AGAAAACAAATTAGGAACATAGATAGCAAAACTAGGACAAGGAGGATTTAAATGTCTTTT
GCCTTTATTTTGTAAAATAGGTATGAAGGAGTAATTAAAATGAATTTTTGAAATATGGGT
CTTTACAAGCTGATGATTGTTGCATTTTGGAGTTGCAACAACATTAAAACAGTTTCAATG
CTTATGCAGAAAATCAGAGAATAACAGCTGTTAGAAGAGTTTATCAACGAGGTTGTGTTA
ATCCAATGATCAACATTGAACAACTGTGGCGAGACTATAACAAGTATGAAGAGGGTATCA
ATATTCATTTAG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q8CE71_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8CE71_MOUSE

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               61-660, gnl|bosTau2|chr9 (42980161-42979566)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               61-660, gnl|bosTau2|chr9 (42980161-42979566)

Expressed library(ies): 18 entry(ies)

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Expressed library(ies): 18 entry(ies)

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               cbe (0.956938)
               

               
               fce (0.271592)
               

               
               lyg (0.266205)
               

               
               mgp (0.230681)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               cki (0.165235)
               

               
               cje (0.165235)
               

               
               fco (0.157208)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               med (0.116252)
               

               
               ldo (0.0970026)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.956938)
               

               
               fce (0.271592)
               

               
               lyg (0.266205)
               

               
               mgp (0.230681)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               cki (0.165235)
               

               
               cje (0.165235)
               

               
               fco (0.157208)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               med (0.116252)
               

               
               ldo (0.0970026)

	cbe (0.956938)
	fce (0.271592)
	lyg (0.266205)
	mgp (0.230681)
	aor (0.195274)
	sag (0.182715)
	gul (0.177588)
	ton (0.1755)
	cki (0.165235)
	cje (0.165235)
	fco (0.157208)
	cst (0.140036)
	che (0.136314)
	ste (0.135208)
	ova (0.129132)
	thg (0.126791)
	med (0.116252)
	ldo (0.0970026)