Non-Coding RNA Search

Ss1.1-Pig4-TMW8047O06.3

Sequence:


               
               CCTGGGCCCCGGGATCCCCGCTAAGCTCCTGCGCGCGCGGTCCCCTCGCGGCCCCGCCCC
GGCCCCGCACTTGCCACCAAGTCCCCGCCGCCCACGCGCCGGTGCAGCCGCCAGCCCCGC
CATGCCTGCCGACCTCAGCGGCACCTGGAACCTGGTCAGCAGCGACAACTTCGAGGGCTA
CATGCTGGCCCTAGGTATTGACTTTGCCACTCGTAAGATAGCCAAGCTGCTGAAGCCACA
GAAAGTGATTGAGCAAAATGGGGATTCTTTTACCATCCACACCAACAGCAGCCTAAGGAA
CTACCTCGTTAAATTTAAAGTTGGAGAAGAATTCGATGAGGATAACAAAGGCCTGGATAA
CAGAAAATGCAAGAGCTTGGTCACCTGGGACAATGACAGACTCACCTGTGTGCAGAAGGG
GGAAAAGAAGAACAGAGGCTGGACCCACTGGATTGAAGGGGATGAACTCCACCTGGAGAT
GTTCTGTGAAGGCCAAGTGTGCAAACAGACATTCCAGAGAGCTTGATCTGTAGCCAACCA
TAGGGTCCACGTGTGGCTACAGTTTAATTTGGAGTTATATTCCAAATGAACAGATGCGGA
TTCGTCCTGGTTTGCTGATGGGGCTTTGTGGTCAGAGAGATGTCACACAGGCTGCACTGG
AAGCCATTTGAATTGTGAGAAAGCTTAGCTTCAATAAACCTGTCCAGGGAGTTCCCGGGT
GGCCTAGTGGTTAGGATTTGGCACTTTCAGTGTTGTGGCCCAGGTTCGAATAAATAAATA
AACAAATCAGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGGGCCCCGGGATCCCCGCTAAGCTCCTGCGCGCGCGGTCCCCTCGCGGCCCCGCCCC
GGCCCCGCACTTGCCACCAAGTCCCCGCCGCCCACGCGCCGGTGCAGCCGCCAGCCCCGC
CATGCCTGCCGACCTCAGCGGCACCTGGAACCTGGTCAGCAGCGACAACTTCGAGGGCTA
CATGCTGGCCCTAGGTATTGACTTTGCCACTCGTAAGATAGCCAAGCTGCTGAAGCCACA
GAAAGTGATTGAGCAAAATGGGGATTCTTTTACCATCCACACCAACAGCAGCCTAAGGAA
CTACCTCGTTAAATTTAAAGTTGGAGAAGAATTCGATGAGGATAACAAAGGCCTGGATAA
CAGAAAATGCAAGAGCTTGGTCACCTGGGACAATGACAGACTCACCTGTGTGCAGAAGGG
GGAAAAGAAGAACAGAGGCTGGACCCACTGGATTGAAGGGGATGAACTCCACCTGGAGAT
GTTCTGTGAAGGCCAAGTGTGCAAACAGACATTCCAGAGAGCTTGATCTGTAGCCAACCA
TAGGGTCCACGTGTGGCTACAGTTTAATTTGGAGTTATATTCCAAATGAACAGATGCGGA
TTCGTCCTGGTTTGCTGATGGGGCTTTGTGGTCAGAGAGATGTCACACAGGCTGCACTGG
AAGCCATTTGAATTGTGAGAAAGCTTAGCTTCAATAAACCTGTCCAGGGAGTTCCCGGGT
GGCCTAGTGGTTAGGATTTGGCACTTTCAGTGTTGTGGCCCAGGTTCGAATAAATAAATA
AACAAATCAGTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|38614447|gb|AAH63013.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|38614447|gb|AAH63013.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               193-373, gnl|bosTau2|chr16 (31121048-31121228)
               

               
               193-373, gnl|Hg17|chr1 (10001892-10002072)
               

               
               193-373, gnl|Mm7|chr4 (148443078-148442898)
               


               
               475-706, gnl|bosTau2|chr16 (31127369-31127606)
               

               
               475-706, gnl|Hg17|chr1 (10010105-10010340)
               

               
               475-706, gnl|Mm7|chr4 (148439466-148439235)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               193-373, gnl|bosTau2|chr16 (31121048-31121228)
               

               
               193-373, gnl|Hg17|chr1 (10001892-10002072)
               

               
               193-373, gnl|Mm7|chr4 (148443078-148442898)
               


               
               475-706, gnl|bosTau2|chr16 (31127369-31127606)
               

               
               475-706, gnl|Hg17|chr1 (10010105-10010340)
               

               
               475-706, gnl|Mm7|chr4 (148439466-148439235)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ute (0.265569)
               

               
               cag (0.151194)
               

               
               eep (0.122564)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (0.265569)
               

               
               cag (0.151194)
               

               
               eep (0.122564)

	193-373, gnl\|bosTau2\|chr16 (31121048-31121228)
	193-373, gnl\|Hg17\|chr1 (10001892-10002072)
	193-373, gnl\|Mm7\|chr4 (148443078-148442898)

	475-706, gnl\|bosTau2\|chr16 (31127369-31127606)
	475-706, gnl\|Hg17\|chr1 (10010105-10010340)
	475-706, gnl\|Mm7\|chr4 (148439466-148439235)