Non-Coding RNA Search

Ss1.1-Pig4-TMW8047O12.5.5

Sequence:


               
               TGGCCCCGGAGCACACGCTGATGTCCTTCAGGAAGGCCCTGGAGCAGAAGCTGTACGGAC
TGCAGGCTGACGTCACCATCAGCCTGGACGGCGTGCCCTTCCTCATGCACGACGCCACCC
CTGCGGCGCACCACCAACGTGGAGGAGCTGTTCCCGGAGCTCGCTCGCAGGCCCGCCTCC
ATGCTCAACTGGACCATCCTGCAGAGGCTCAACGCTGGCCAGTGGTTCCTGAAGACGGAC
CCCTTCTGGACGGCCAGCTCCCTGTCACCCTCTGACCAGAGAGAGGCCCAAAACCAGTCC
ATCTGCAGCCTCACGGAGCTCTTGGAGTTGGCCAAGGGCAACGCCACACTGCTGCTCAAC
CTGCGCGACCCGCCGCGGGAGCACCCCTACCGGGGCAGCTTCGTCAACGTCACGCTGGAG
GCCCTGCTGCGCTCAGGCTTCCCCCAGCACCAGGTCCTGTGGCTGCCCAACAGGCAGAGG
CCCTTGGTGCGGAAGGTGGCTCCTGGCTTCCAGCAGACGTCCGGCTCCAAGGAGGCAGCT
GCCACCCTTCGGAAAGGCCACATCCAGGGCCTGAACCTGCGCTACACGCAGGTGTCCCGC
CAGGAGCTCAGGGACTACGCCTCCTGGAACCTGAGCGTGAACCTCTACACAGTCAATGCC
CCCTGGCTCTTCTCCCTGCTGTGGTGCGCAGGCGTCCCCTCCGTCACCTCTGACAACTCC
CACACCCTGTCGCAGGTGCCTGTCCCCCTCTGGATCATGCCCCCAGACGAATACTGCCTC
ATGTGGGTCACCGCCGACCTGATCTCCTTCGCCCTCATCGTGGGCATCTTCGTGCTCCAG
AAGTGGCGCCTGGGTGGCATACGTAGCTACAACCCTGAGCAGATCATGCTGAGCGCCGCG
GTGCACCGGACCAGCCGGGACGTCAGCATCATGAAGGAGAAGCTCATCTTCTCAGAGATC
AGTGACGGCATGGAGGTCTCCGACGAGCTCTCTGTGTGCTCAGATCACAGTTACGACACG
TATGCCAACAGCACCACTGCCCCTGTGGCCCCCCGAGGGAGTAGCAGCCGCACCAAGACC
CTCACAGGCCGGGGTGGGCATTAGCTGAAGACCTGTCTGTCCAGCCTGTACCTCGCGTGG
AGACCAGGGAAGCCCAGAGAGCTAGCAGGAGTGCGCTGGGAGCTGGCTCCATGGCCTTCT
CATTGGCTCCAGCCCCTTGTCAGCCACGGCCTCTCTCGGAGGGAGCTCCCTTCTGCAGCC
TCTCGGGTACCCCTGCAGGCCTGGGGTGCCTTCTTCTGGGAAGTCTGAGGCCTGGTCCTC
TCCTCCCATCCTGACCTGGAAGCTCTGAGGGGTCAATGGGCGATGCCGTGCCCCATGGCA
ATGAGGGAAATGAAGCCTGAGTGCGCCCCTGAGCGTCTGTCCGTCTGTGCTGCAAAGAAA
CGACTTCCTGTTTCTCCCACCTCAAGGGCGTTGGCTGAGCCTCTGCCCCAGCAGCTCTGC
TCACCTGTCAGGTGAAAGCGCAAGGAAGCTCGGCCCAGGAGGAACCTGCTGCGTGGGAAG
ACACTCCTCCTCCCTGGCCAGCCTCCGCCACCATTGGCCCTGCCCCAGGAGAGGGCCTGA
GCCATGTCCCCAGGAGCAGCTGGAGGTGGCCAGAAGAGCAGACTCAGGGCTGCTGGATCT
CACACCCAAGTGTCCAGCAGGCCTCTGGGACAAACTGGCCTGGAGGCCCAGGAGGTCCAC
AGACTGACACGACCTCAGGTTTTCACATCAGTGGCCAAGGGCAGGAGCCCCCAGGGAAGA
GGTTCAGGCATGGTCAAGGGTGGGCGTATGGCCAGAGGCCCACAGTGAAGGGCGTCTGAG
GAGCCTTGGCCAAGGTGATTAAAGCTGCCACCTTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCCCCGGAGCACACGCTGATGTCCTTCAGGAAGGCCCTGGAGCAGAAGCTGTACGGAC
TGCAGGCTGACGTCACCATCAGCCTGGACGGCGTGCCCTTCCTCATGCACGACGCCACCC
CTGCGGCGCACCACCAACGTGGAGGAGCTGTTCCCGGAGCTCGCTCGCAGGCCCGCCTCC
ATGCTCAACTGGACCATCCTGCAGAGGCTCAACGCTGGCCAGTGGTTCCTGAAGACGGAC
CCCTTCTGGACGGCCAGCTCCCTGTCACCCTCTGACCAGAGAGAGGCCCAAAACCAGTCC
ATCTGCAGCCTCACGGAGCTCTTGGAGTTGGCCAAGGGCAACGCCACACTGCTGCTCAAC
CTGCGCGACCCGCCGCGGGAGCACCCCTACCGGGGCAGCTTCGTCAACGTCACGCTGGAG
GCCCTGCTGCGCTCAGGCTTCCCCCAGCACCAGGTCCTGTGGCTGCCCAACAGGCAGAGG
CCCTTGGTGCGGAAGGTGGCTCCTGGCTTCCAGCAGACGTCCGGCTCCAAGGAGGCAGCT
GCCACCCTTCGGAAAGGCCACATCCAGGGCCTGAACCTGCGCTACACGCAGGTGTCCCGC
CAGGAGCTCAGGGACTACGCCTCCTGGAACCTGAGCGTGAACCTCTACACAGTCAATGCC
CCCTGGCTCTTCTCCCTGCTGTGGTGCGCAGGCGTCCCCTCCGTCACCTCTGACAACTCC
CACACCCTGTCGCAGGTGCCTGTCCCCCTCTGGATCATGCCCCCAGACGAATACTGCCTC
ATGTGGGTCACCGCCGACCTGATCTCCTTCGCCCTCATCGTGGGCATCTTCGTGCTCCAG
AAGTGGCGCCTGGGTGGCATACGTAGCTACAACCCTGAGCAGATCATGCTGAGCGCCGCG
GTGCACCGGACCAGCCGGGACGTCAGCATCATGAAGGAGAAGCTCATCTTCTCAGAGATC
AGTGACGGCATGGAGGTCTCCGACGAGCTCTCTGTGTGCTCAGATCACAGTTACGACACG
TATGCCAACAGCACCACTGCCCCTGTGGCCCCCCGAGGGAGTAGCAGCCGCACCAAGACC
CTCACAGGCCGGGGTGGGCATTAGCTGAAGACCTGTCTGTCCAGCCTGTACCTCGCGTGG
AGACCAGGGAAGCCCAGAGAGCTAGCAGGAGTGCGCTGGGAGCTGGCTCCATGGCCTTCT
CATTGGCTCCAGCCCCTTGTCAGCCACGGCCTCTCTCGGAGGGAGCTCCCTTCTGCAGCC
TCTCGGGTACCCCTGCAGGCCTGGGGTGCCTTCTTCTGGGAAGTCTGAGGCCTGGTCCTC
TCCTCCCATCCTGACCTGGAAGCTCTGAGGGGTCAATGGGCGATGCCGTGCCCCATGGCA
ATGAGGGAAATGAAGCCTGAGTGCGCCCCTGAGCGTCTGTCCGTCTGTGCTGCAAAGAAA
CGACTTCCTGTTTCTCCCACCTCAAGGGCGTTGGCTGAGCCTCTGCCCCAGCAGCTCTGC
TCACCTGTCAGGTGAAAGCGCAAGGAAGCTCGGCCCAGGAGGAACCTGCTGCGTGGGAAG
ACACTCCTCCTCCCTGGCCAGCCTCCGCCACCATTGGCCCTGCCCCAGGAGAGGGCCTGA
GCCATGTCCCCAGGAGCAGCTGGAGGTGGCCAGAAGAGCAGACTCAGGGCTGCTGGATCT
CACACCCAAGTGTCCAGCAGGCCTCTGGGACAAACTGGCCTGGAGGCCCAGGAGGTCCAC
AGACTGACACGACCTCAGGTTTTCACATCAGTGGCCAAGGGCAGGAGCCCCCAGGGAAGA
GGTTCAGGCATGGTCAAGGGTGGGCGTATGGCCAGAGGCCCACAGTGAAGGGCGTCTGAG
GAGCCTTGGCCAAGGTGATTAAAGCTGCCACCTTGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|21758933|dbj|BAC05418.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|21758933|dbj|BAC05418.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               229-1874, + strand, RNAz p=0.846627

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               229-1874, + strand, RNAz p=0.846627

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               5' of AL833941, +
               

               
               3' of BC018771, +

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AL833941, +
               

               
               3' of BC018771, +

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               229-455, gnl|bosTau2|chr15 (35102166-35101939)
               

               
               229-455, gnl|Hg17|chr11 (74831281-74831054)
               

               
               229-455, gnl|Mm7|chr7 (95484570-95484797)
               


               
               609-759, gnl|bosTau2|chr15 (35100790-35100640)
               

               
               609-759, gnl|Hg17|chr11 (74830006-74829856)
               

               
               609-759, gnl|Mm7|chr7 (95485702-95485852)
               


               
               953-1312, gnl|bosTau2|chr15 (35092039-35091682)
               

               
               953-1312, gnl|Hg17|chr11 (74824351-74823957)
               

               
               953-1312, gnl|Mm7|chr7 (95490749-95491164)
               


               
               1727-1896, gnl|bosTau2|chr15 (35091293-35091119)
               

               
               1727-1896, gnl|canFam2|chr21 (26162249-26161883)
               

               
               1727-1896, gnl|echTel1|scaffold_108266 (537-874)
               

               
               1727-1896, gnl|hg17|chr11 (74823196-74823578)
               

               
               1727-1896, gnl|Hg17|chr11 (74823544-74823333)
               

               
               1727-1896, gnl|loxAfr1|scaffold_31345 (31532-31923)
               

               
               1727-1896, gnl|mm7|chr7 (95491916-95491534)
               

               
               1727-1896, gnl|Mm7|chr7 (95491566-95491777)
               

               
               1727-1896, gnl|oryCun1|scaffold_104847 (4231-4014)
               

               
               1727-1896, gnl|panTro1|chr9 (76103692-76104074)
               

               
               1727-1896, gnl|rheMac2|chr14 (73615620-73616002)
               

               
               1727-1896, gnl|rn3|chr1 (156872203-156871828)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               229-455, gnl|bosTau2|chr15 (35102166-35101939)
               

               
               229-455, gnl|Hg17|chr11 (74831281-74831054)
               

               
               229-455, gnl|Mm7|chr7 (95484570-95484797)
               


               
               609-759, gnl|bosTau2|chr15 (35100790-35100640)
               

               
               609-759, gnl|Hg17|chr11 (74830006-74829856)
               

               
               609-759, gnl|Mm7|chr7 (95485702-95485852)
               


               
               953-1312, gnl|bosTau2|chr15 (35092039-35091682)
               

               
               953-1312, gnl|Hg17|chr11 (74824351-74823957)
               

               
               953-1312, gnl|Mm7|chr7 (95490749-95491164)
               


               
               1727-1896, gnl|bosTau2|chr15 (35091293-35091119)
               

               
               1727-1896, gnl|canFam2|chr21 (26162249-26161883)
               

               
               1727-1896, gnl|echTel1|scaffold_108266 (537-874)
               

               
               1727-1896, gnl|hg17|chr11 (74823196-74823578)
               

               
               1727-1896, gnl|Hg17|chr11 (74823544-74823333)
               

               
               1727-1896, gnl|loxAfr1|scaffold_31345 (31532-31923)
               

               
               1727-1896, gnl|mm7|chr7 (95491916-95491534)
               

               
               1727-1896, gnl|Mm7|chr7 (95491566-95491777)
               

               
               1727-1896, gnl|oryCun1|scaffold_104847 (4231-4014)
               

               
               1727-1896, gnl|panTro1|chr9 (76103692-76104074)
               

               
               1727-1896, gnl|rheMac2|chr14 (73615620-73616002)
               

               
               1727-1896, gnl|rn3|chr1 (156872203-156871828)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               nmm (0.265604)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               nje (0.16592)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.265604)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               nje (0.16592)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	229-455, gnl\|bosTau2\|chr15 (35102166-35101939)
	229-455, gnl\|Hg17\|chr11 (74831281-74831054)
	229-455, gnl\|Mm7\|chr7 (95484570-95484797)

	609-759, gnl\|bosTau2\|chr15 (35100790-35100640)
	609-759, gnl\|Hg17\|chr11 (74830006-74829856)
	609-759, gnl\|Mm7\|chr7 (95485702-95485852)

	953-1312, gnl\|bosTau2\|chr15 (35092039-35091682)
	953-1312, gnl\|Hg17\|chr11 (74824351-74823957)
	953-1312, gnl\|Mm7\|chr7 (95490749-95491164)

	1727-1896, gnl\|bosTau2\|chr15 (35091293-35091119)
	1727-1896, gnl\|canFam2\|chr21 (26162249-26161883)
	1727-1896, gnl\|echTel1\|scaffold_108266 (537-874)
	1727-1896, gnl\|hg17\|chr11 (74823196-74823578)
	1727-1896, gnl\|Hg17\|chr11 (74823544-74823333)
	1727-1896, gnl\|loxAfr1\|scaffold_31345 (31532-31923)
	1727-1896, gnl\|mm7\|chr7 (95491916-95491534)
	1727-1896, gnl\|Mm7\|chr7 (95491566-95491777)
	1727-1896, gnl\|oryCun1\|scaffold_104847 (4231-4014)
	1727-1896, gnl\|panTro1\|chr9 (76103692-76104074)
	1727-1896, gnl\|rheMac2\|chr14 (73615620-73616002)
	1727-1896, gnl\|rn3\|chr1 (156872203-156871828)

	nmm (0.265604)
	ece (0.229305)
	fcc (0.197785)
	cmu (0.186393)
	nje (0.16592)
	ebs (0.118301)
	ecc (0.115035)