Ss1.1-Pig4-TMW8047O13.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGTGCAAATTCTGGGTCTTTTGTTGCAGGCTAATAAAGTTTTTCTTTCTTTCATTATTT TTTTTTCCTAAGAGTTTTGTCGGGGGAAATTAACCCCCCAGGGCTGCCGGGTTGGCCGCG CTGCCTGGGCCGGAGGGCGCCTCTGGCCGGGGAGAGCCAAGGGAAGCCACCAGAGCCTGT TTTTAAATAGCATCTTTCAGACTTGTTTCCGCGGTCTCAGTCCTCGACCTCGGCGCTACC TGGGCTCTCGAAGCCTCTCCCTAGGTCTCCTTCAAACGACCACCTCGGATTCCTTATGGA TCGCAGCTCCAAGAGGAGGCAGGTGAAGCCTTTGGCAGCTTCTCTCCTAGAAGCTCTCGA TTATGATAGTTCAGATGACAGTGATTTTAAAGTTGGAGATGCTTCAGATTCTGAAGGGAG TGGTAATGGAAGTGAAGATCCTTCAAAGGACAGTGGAGAAGGTTCCTGTAGTGATTCTGA AGAAAATATTTTAGAGGAAGAACTGAATGAAGATATTAAAGTAAAGGAAGAACAACTTAA AAATTCTGCAGAGGAAGAAATTCTCTCATCAGAAAAACAATTAATTAAAGTGGAAAAAAA GGAGGAAGAAGAGAATGGAGAAAGACCTAGAAAGAAAAAGGAAAAAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGTGCAAATTCTGGGTCTTTTGTTGCAGGCTAATAAAGTTTTTCTTTCTTTCATTATTT TTTTTTCCTAAGAGTTTTGTCGGGGGAAATTAACCCCCCAGGGCTGCCGGGTTGGCCGCG CTGCCTGGGCCGGAGGGCGCCTCTGGCCGGGGAGAGCCAAGGGAAGCCACCAGAGCCTGT TTTTAAATAGCATCTTTCAGACTTGTTTCCGCGGTCTCAGTCCTCGACCTCGGCGCTACC TGGGCTCTCGAAGCCTCTCCCTAGGTCTCCTTCAAACGACCACCTCGGATTCCTTATGGA TCGCAGCTCCAAGAGGAGGCAGGTGAAGCCTTTGGCAGCTTCTCTCCTAGAAGCTCTCGA TTATGATAGTTCAGATGACAGTGATTTTAAAGTTGGAGATGCTTCAGATTCTGAAGGGAG TGGTAATGGAAGTGAAGATCCTTCAAAGGACAGTGGAGAAGGTTCCTGTAGTGATTCTGA AGAAAATATTTTAGAGGAAGAACTGAATGAAGATATTAAAGTAAAGGAAGAACAACTTAA AAATTCTGCAGAGGAAGAAATTCTCTCATCAGAAAAACAATTAATTAAAGTGGAAAAAAA GGAGGAAGAAGAGAATGGAGAAAGACCTAGAAAGAAAAAGGAAAAAGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 56-176, + strand, RNAz p=0.935489 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 56-176, + strand, RNAz p=0.935489 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_001007157, + |
| Aligned organism(s): 9 entry(ies) | More info |
| Aligned organism(s): 9 entry(ies) | Help | Less info |
| 18-176, gnl|bosTau2|chr4 (5054855-5055007) | |
| 18-176, gnl|Hg17|chr7 (10786829-10786982) | |
| 18-176, gnl|Mm7|chr6 (11863436-11863561) | |
| 181-296, gnl|bosTau2|chr4 (5055107-5055222) | |
| 181-296, gnl|Hg17|chr7 (10787074-10787191) | |
| 181-296, gnl|Mm7|chr6 (11863644-11863753) | |
| 405-648, gnl|bosTau2|chr4 (5064093-5064336) | |
| 405-648, gnl|Hg17|chr7 (10795236-10795479) | |
| 405-648, gnl|Mm7|chr6 (11870717-11870958) |
| Aligned organism(s): 9 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 18-176, gnl|bosTau2|chr4 (5054855-5055007) | |
| 18-176, gnl|Hg17|chr7 (10786829-10786982) | |
| 18-176, gnl|Mm7|chr6 (11863436-11863561) | |
| 181-296, gnl|bosTau2|chr4 (5055107-5055222) | |
| 181-296, gnl|Hg17|chr7 (10787074-10787191) | |
| 181-296, gnl|Mm7|chr6 (11863644-11863753) | |
| 405-648, gnl|bosTau2|chr4 (5064093-5064336) | |
| 405-648, gnl|Hg17|chr7 (10795236-10795479) | |
| 405-648, gnl|Mm7|chr6 (11870717-11870958) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cst (0.140036) |