Non-Coding RNA Search

Ss1.1-Pig4-TMW8047O16.3

Sequence:


               
               AAACAAAACCGGTGGTCTATGAAAATCATCATTGAATTTCACCTGGTAAACCGCATCCCA
TGGATTCCCAAACAACTGCCTGTTTATTCTGTTAAAGAAGCATTTAGTCCACGTGCAAAG
GCTTGAATTCCCCCTGCATCAATATAGTCATGCAGTTCCACTTTTCTCAGATTGATGAAT
ACTAAATTATGAAGTTAATGAGGGTGAACTGTGAAATGGATGCATGTCGTTCATACTTCA
GCAATGACCATACACAAAACAAGACAAGATGAGTTTTACCTAGGTGAAACCTTATTATAC
TATACTAACAACATAGAAACATACTCTTTGTAACTTTTTATGACCAAAACGGAATGATAT
ATATGTCTTGAAATTATTCGATGAATTGTGGCTGACGAATTAAGTTAGCCACTTTAATTT
TTTTCAATATTAAAATTTCTAAACATGTTTTTCGAAGCAGAGCAACTCAGAGTCGATAAC
AGTCATTATATTGTGAACTTTTAGGTGGTGCTTAAGAATTCTTATTCAATACCAGTATTT
TTTTTTTTTTTCTTAAGAGTAAGTTGAAGGGAGTAAATGAGGCAGAATGCCACTCCACCC
TCAGGTCAATTTTGTGGTATATGAAAATGCCAATAAATACTTGTGCCACTTGCCAATTGG
GAGGGCTTTTCCCTTCCTGGACGTTTTGTTTTAGTTCGACTTTGTGTCACATTGCTTAGA
GAGCGTCCACAAGGAGAAGTTGCCGTGGCAACGCCAACTAGAGTTCAAAAACAACCTGAG
TGATCTAGGGTCAAACCACTTTCATCCCTTAAAATATAGGCACTAATTTTCATTTTTTAG
AATGTATTTCTTCTGTGGCTTAGAAATGTGCCAATATGTTCAAAACATTCTGCACCGATT
TCACCAGACTTAGTACCTACTAAAAACTCAAACTCGTCGTTTTTTCTTCTATGTAACGGT
GACTTTTAAATAAAGGACTATATGCATTTTGTTATTTCGAGCTTTGGTGAACATGATAAG
AATAATGAGCTGTGATCGTTATCAGACTGACTGAATGATTCCTAATTTCCAATGATTGAT
CTCATCCTGTATTAAATTGCACAGGTATCATATCTGTGGCTGTAAATAACTGGAACTGTA
TGCTGATTAACATGACAGTTTCTCCTTTTTTGGTTGTTCTTAAACCTGTACTGTATTATA
GAATGTGGGTATAAATATCTACAAGTATAAACACACATGTATATGTAATTCCACTATTGT
AGCCTGAAAGACTATGTATTATCTTTTTTATTCTATATTGGTGTTTGTGTTATTTAAAAA
GCAAAACCATGCTCTATTTAGTTGTATAATATTACAGGATACTTTGTTGTGCACAATTCC
AAGTGCCTTAGAACATTGTTTAGCTTTCTTAAGTATATATAAATACATTAAATACATATA
TGTATAAAATTGGAAAAAGTTACCTCAATAAAATCATTGGGACATCCCCAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACAAAACCGGTGGTCTATGAAAATCATCATTGAATTTCACCTGGTAAACCGCATCCCA
TGGATTCCCAAACAACTGCCTGTTTATTCTGTTAAAGAAGCATTTAGTCCACGTGCAAAG
GCTTGAATTCCCCCTGCATCAATATAGTCATGCAGTTCCACTTTTCTCAGATTGATGAAT
ACTAAATTATGAAGTTAATGAGGGTGAACTGTGAAATGGATGCATGTCGTTCATACTTCA
GCAATGACCATACACAAAACAAGACAAGATGAGTTTTACCTAGGTGAAACCTTATTATAC
TATACTAACAACATAGAAACATACTCTTTGTAACTTTTTATGACCAAAACGGAATGATAT
ATATGTCTTGAAATTATTCGATGAATTGTGGCTGACGAATTAAGTTAGCCACTTTAATTT
TTTTCAATATTAAAATTTCTAAACATGTTTTTCGAAGCAGAGCAACTCAGAGTCGATAAC
AGTCATTATATTGTGAACTTTTAGGTGGTGCTTAAGAATTCTTATTCAATACCAGTATTT
TTTTTTTTTTTCTTAAGAGTAAGTTGAAGGGAGTAAATGAGGCAGAATGCCACTCCACCC
TCAGGTCAATTTTGTGGTATATGAAAATGCCAATAAATACTTGTGCCACTTGCCAATTGG
GAGGGCTTTTCCCTTCCTGGACGTTTTGTTTTAGTTCGACTTTGTGTCACATTGCTTAGA
GAGCGTCCACAAGGAGAAGTTGCCGTGGCAACGCCAACTAGAGTTCAAAAACAACCTGAG
TGATCTAGGGTCAAACCACTTTCATCCCTTAAAATATAGGCACTAATTTTCATTTTTTAG
AATGTATTTCTTCTGTGGCTTAGAAATGTGCCAATATGTTCAAAACATTCTGCACCGATT
TCACCAGACTTAGTACCTACTAAAAACTCAAACTCGTCGTTTTTTCTTCTATGTAACGGT
GACTTTTAAATAAAGGACTATATGCATTTTGTTATTTCGAGCTTTGGTGAACATGATAAG
AATAATGAGCTGTGATCGTTATCAGACTGACTGAATGATTCCTAATTTCCAATGATTGAT
CTCATCCTGTATTAAATTGCACAGGTATCATATCTGTGGCTGTAAATAACTGGAACTGTA
TGCTGATTAACATGACAGTTTCTCCTTTTTTGGTTGTTCTTAAACCTGTACTGTATTATA
GAATGTGGGTATAAATATCTACAAGTATAAACACACATGTATATGTAATTCCACTATTGT
AGCCTGAAAGACTATGTATTATCTTTTTTATTCTATATTGGTGTTTGTGTTATTTAAAAA
GCAAAACCATGCTCTATTTAGTTGTATAATATTACAGGATACTTTGTTGTGCACAATTCC
AAGTGCCTTAGAACATTGTTTAGCTTTCTTAAGTATATATAAATACATTAAATACATATA
TGTATAAAATTGGAAAAAGTTACCTCAATAAAATCATTGGGACATCCCCAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1306-1488, + strand, RNAz p=0.914284

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1306-1488, + strand, RNAz p=0.914284

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1488, gnl|bosTau2|chr9 (47857362-47855895)
               

               
               1-1488, gnl|Hg17|chr6 (144192145-144193658)
               

               
               1-1488, gnl|Mm7|chr10 (12909550-12908075)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1488, gnl|bosTau2|chr9 (47857362-47855895)
               

               
               1-1488, gnl|Hg17|chr6 (144192145-144193658)
               

               
               1-1488, gnl|Mm7|chr10 (12909550-12908075)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               fco (0.314416)
               

               
               nlu (0.191681)
               

               
               mgm (0.180343)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               eru (0.120048)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.314416)
               

               
               nlu (0.191681)
               

               
               mgm (0.180343)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               eru (0.120048)

	1-1488, gnl\|bosTau2\|chr9 (47857362-47855895)
	1-1488, gnl\|Hg17\|chr6 (144192145-144193658)
	1-1488, gnl\|Mm7\|chr10 (12909550-12908075)

	fco (0.314416)
	nlu (0.191681)
	mgm (0.180343)
	fbs (0.175346)
	fhi (0.169578)
	isp (0.150376)
	liv (0.146284)
	pla (0.133672)
	ova (0.129132)
	ret (0.128733)
	tra (0.123092)
	eru (0.120048)