Ss1.1-Pig4-TMW8047O21.3
|
GCATGAGCAGACGCTGGAGACCTTCAAACTGTTGAACTCGACCAACAGGGAAGATGAAGA
CACACCCCCCAACTCTCCGAACGTGGATCTTGGGAAGCGGGCACCTACACCCATCCGGGA
AAAGGAAGTCACCATGTGCATGCGCTGCCAGGAGCCCTTCAATTCCATCACCAAACGCAG
GCACCACTGCAAGGCCTGTGGGCATGTGGTTTGTGGGAAGTGCTCCGAGTTTCGGGCCCG
CCTCGTCTATGACAACAACCGTTCCAACCGTGTGTGCACTGACTGCTACGTGGCCTTGCA
TGGTGTGCCCGGGAGCAGCCCAGCCTGCAGCCAGCATACACCTCAGCGCCGGAGGTCCAT
CCTGGAGAAACAGGCCTCAGTGGCTGCGGAGAACAGCGTCATCTGCAGCTTCCTGTACTA
CATGGAGAAGGGCGGGAAAGGCTGGCACAAGGCATGGTTTGTGGTCCCTGAGAACGAACC
CTTGGTGCTGTACATCTACGGAGCCCCTCAGGATGTGAAAGCCCAGCGCAGCCTGCCCCT
CATTGGCTTTGAGGTGGGGCCTCCTGAGGCTGGGGAACGGCCTGACAGAAGGCATGTCTT
CAAGATCACCCAGAGCCACCTGAGCTGGTACTTCAGTCCTGAGACAGAGGAGCTGCAGCG
ACGATGGATGGCTGTGCTTGGCCGGGCAGGCCGTGGGGACACGTTCTGCCCAGGGCCTAC
ATTGTCTGAGGACAGGGAGATGGAAGAGGCACCGGTGGCAGCTTCAGGAGCCACTGCTGA
ACCCTCTGAAGCCCCCCAGACCCGAGACAAGACCTAGAGGGTTTGTGGGTAACTGGGGTC
CCAGCCCCCTCCCTCCCAGCTCAGTCAATACTTGAACTCCCATCATGGGCACTTTCAATC
CTGAATGCTGGGTCTTGGGCTTTTTAATTCATCTTTTCACAAAACCTGGGCTTTTAAAAA
AGTATTCCTACAGTGATGTTAATTTTTTTTTAAACCCTGTCCCCAGGGAGTGTGGGAGCT
GTTGCTAGACCTGCCTGAATTAGGCCATTTTTCCCCAACCCCTCAATACCCTACAGATCC
TGCCTCCACCCAATTCCCCCCAAAGCACCGGAGGCAGGAGATCTGGATTCAAGTGCCAGC
TCTGCCACTGACCCCATGGTCCTGGCCCACCCCTGCCCCTCAACCAGTATCTTCACACAT
GTGATGCTAAGCGGGGTGGTGACCAGACCTCTCCTGCCTCTCCCATAGCTTTTAGCTTCT
ACCCGGCCCCAAGGCTACCCAGTATTTTATGGTCCAGACCCATGGCAGGGCCACCGGGCA
GGACAGGGGAAAGGGGGAGGGGGGAGGACAATGAATACTCTGTTTTGTTTTTTTAAAGAA
AAATACAGTTTA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCATGAGCAGACGCTGGAGACCTTCAAACTGTTGAACTCGACCAACAGGGAAGATGAAGA
CACACCCCCCAACTCTCCGAACGTGGATCTTGGGAAGCGGGCACCTACACCCATCCGGGA
AAAGGAAGTCACCATGTGCATGCGCTGCCAGGAGCCCTTCAATTCCATCACCAAACGCAG
GCACCACTGCAAGGCCTGTGGGCATGTGGTTTGTGGGAAGTGCTCCGAGTTTCGGGCCCG
CCTCGTCTATGACAACAACCGTTCCAACCGTGTGTGCACTGACTGCTACGTGGCCTTGCA
TGGTGTGCCCGGGAGCAGCCCAGCCTGCAGCCAGCATACACCTCAGCGCCGGAGGTCCAT
CCTGGAGAAACAGGCCTCAGTGGCTGCGGAGAACAGCGTCATCTGCAGCTTCCTGTACTA
CATGGAGAAGGGCGGGAAAGGCTGGCACAAGGCATGGTTTGTGGTCCCTGAGAACGAACC
CTTGGTGCTGTACATCTACGGAGCCCCTCAGGATGTGAAAGCCCAGCGCAGCCTGCCCCT
CATTGGCTTTGAGGTGGGGCCTCCTGAGGCTGGGGAACGGCCTGACAGAAGGCATGTCTT
CAAGATCACCCAGAGCCACCTGAGCTGGTACTTCAGTCCTGAGACAGAGGAGCTGCAGCG
ACGATGGATGGCTGTGCTTGGCCGGGCAGGCCGTGGGGACACGTTCTGCCCAGGGCCTAC
ATTGTCTGAGGACAGGGAGATGGAAGAGGCACCGGTGGCAGCTTCAGGAGCCACTGCTGA
ACCCTCTGAAGCCCCCCAGACCCGAGACAAGACCTAGAGGGTTTGTGGGTAACTGGGGTC
CCAGCCCCCTCCCTCCCAGCTCAGTCAATACTTGAACTCCCATCATGGGCACTTTCAATC
CTGAATGCTGGGTCTTGGGCTTTTTAATTCATCTTTTCACAAAACCTGGGCTTTTAAAAA
AGTATTCCTACAGTGATGTTAATTTTTTTTTAAACCCTGTCCCCAGGGAGTGTGGGAGCT
GTTGCTAGACCTGCCTGAATTAGGCCATTTTTCCCCAACCCCTCAATACCCTACAGATCC
TGCCTCCACCCAATTCCCCCCAAAGCACCGGAGGCAGGAGATCTGGATTCAAGTGCCAGC
TCTGCCACTGACCCCATGGTCCTGGCCCACCCCTGCCCCTCAACCAGTATCTTCACACAT
GTGATGCTAAGCGGGGTGGTGACCAGACCTCTCCTGCCTCTCCCATAGCTTTTAGCTTCT
ACCCGGCCCCAAGGCTACCCAGTATTTTATGGTCCAGACCCATGGCAGGGCCACCGGGCA
GGACAGGGGAAAGGGGGAGGGGGGAGGACAATGAATACTCTGTTTTGTTTTTTTAAAGAA
AAATACAGTTTA
|
|
gi|61823515|ref|XP_588498.1| |
Protein identifier
|
gi|61823515|ref|XP_588498.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
203-367, gnl|bosTau2|chrX (26569742-26569906) |
|
203-367, gnl|canFam2|chrX (46167346-46167536) |
|
203-367, gnl|danRer3|chr3 (2570217-2570397) |
|
203-367, gnl|dasNov1|scaffold_37649 (2998-3187) |
|
203-367, gnl|echTel1|scaffold_285081 (60847-60657) |
|
203-367, gnl|fr1|chrUn (175927579-175927744) |
|
203-367, gnl|hg17|chrX (54358246-54358435) |
|
203-367, gnl|Hg17|chrX (54358424-54358260) |
|
203-367, gnl|loxAfr1|scaffold_40209 (19579-19769) |
|
203-367, gnl|mm7|chrX (145845673-145845483) |
|
203-367, gnl|Mm7|chrX (145845492-145845656) |
|
203-367, gnl|monDom2|scaffold_255 (261137-261315) |
|
203-367, gnl|oryCun1|scaffold_100277 (30242-30061) |
|
203-367, gnl|panTro1|chrX (55619587-55619776) |
|
203-367, gnl|rheMac2|chrX (52768460-52768650) |
|
203-367, gnl|rn3|chrX (40458140-40457958) |
|
203-367, gnl|tetNig1|chrUn_random (90463841-90464027) |
|
203-367, gnl|xenTro1|scaffold_750 (391465-391294) |
| |
|
836-1392, gnl|bosTau2|chrX (26572495-26573050) |
|
836-1392, gnl|Hg17|chrX (54355503-54354925) |
|
836-1392, gnl|Mm7|chrX (145847643-145848179) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
203-367, gnl|bosTau2|chrX (26569742-26569906) |
|
203-367, gnl|canFam2|chrX (46167346-46167536) |
|
203-367, gnl|danRer3|chr3 (2570217-2570397) |
|
203-367, gnl|dasNov1|scaffold_37649 (2998-3187) |
|
203-367, gnl|echTel1|scaffold_285081 (60847-60657) |
|
203-367, gnl|fr1|chrUn (175927579-175927744) |
|
203-367, gnl|hg17|chrX (54358246-54358435) |
|
203-367, gnl|Hg17|chrX (54358424-54358260) |
|
203-367, gnl|loxAfr1|scaffold_40209 (19579-19769) |
|
203-367, gnl|mm7|chrX (145845673-145845483) |
|
203-367, gnl|Mm7|chrX (145845492-145845656) |
|
203-367, gnl|monDom2|scaffold_255 (261137-261315) |
|
203-367, gnl|oryCun1|scaffold_100277 (30242-30061) |
|
203-367, gnl|panTro1|chrX (55619587-55619776) |
|
203-367, gnl|rheMac2|chrX (52768460-52768650) |
|
203-367, gnl|rn3|chrX (40458140-40457958) |
|
203-367, gnl|tetNig1|chrUn_random (90463841-90464027) |
|
203-367, gnl|xenTro1|scaffold_750 (391465-391294) |
| |
|
836-1392, gnl|bosTau2|chrX (26572495-26573050) |
|
836-1392, gnl|Hg17|chrX (54355503-54354925) |
|
836-1392, gnl|Mm7|chrX (145847643-145848179) |
|
ese (0.253004) |
|
eru (0.120048) |
|
ebs (0.118301) |
|
ese (0.253004) |
|
eru (0.120048) |
|
ebs (0.118301) |
