Non-Coding RNA Search

Ss1.1-Pig4-TMW8047O22.3

Sequence:


               
               ATGGTTAAGTAACCTAAAATATGCGTTAGAATTGTGAGATGTCTCATGAATTTGCCAATC
CCTAGAGTGGAACCAAATAGCCTTTGATGTAAAGGGCAGTGGCTGCAGGGGGCTCTACTT
CAGGTGCTGCTAAAGCCTCCTCTAATCAGGTCTAAACTGTGTAGTAAACTGCAGTGGAAA
GAGGATGGTTTCTGCTCAGGCCAAGGGATTCACTGATCTGTCCTTACAAATTCAGAACAG
TGTGAGCAGAACCTCAACCCAAAACCCATTTTAACGTTTCATGGATCTCACATGATCTTT
GACAAGGATTCCAGATATACTTGTGCCCAAAGGTATTGAACAGTGATTGTCCCAATGTAG
TTCTGTTATCAACCTTCTTGTGTCTTTATATTGTTTATTTGGAGAGTCAGGGGCGAAAGA
CAGGTGACGTAGCACTTCTGTTTTTAATAATTACAGCTTAAACTATCCAGTAATTTTTAG
TCCTAAAAAGGGACATCAGGAAGTTACCCGGGATTACTGACAAAAGTCTTTCCATTTGAT
GAGATAGTCTGGTAATTTCCTAGTTTTGTATCTTTGGTTGAGTAAAAATATTTCAAAGTG
GCATGTGACCACTTGATGCAGAGTCTGGGTTTCTCTATAATAAATCCCTTTGCCAAATGC
AGGAGTTGCAGACTTGCTACTGGCAAGAGTGAAGCAAATGGGTGAGTAAAACTATCCTGA
TGTGGGAACATTTTTTCTCTAGGAGTTGTCTTGATAAAGGTGACAATGCAGGAATCGCAC
TTCTAGGAGGGCTACAGTTTCACCTGACAGGACCTGCCAACCATATCTGGGCAATAATGT
TGGCATTATTTGAGGTGGTAGGCAGGATGCCTATATTCTAATAGATTTGGTTGAGTAGCT
GAGCCAGCTGAGGAGAGGTTGGATGATTGAAAAACAAAGGATTCTTGGTTAATCTGAAGG
TTTCGTTTGGGAACCAACAGTCTTTTAACAGAAAATCTCCTGGATCTTGAGCTACATGTT
TTCCCTGAAAAGTATGCATTTTTTCCAGCAAAATTTTGCTGGGGTTATGTTTTTGAAGAA
TGAACTGAGATGAATATGTGGAACTGTTATTAATGGCATACTGTCCTAGAAACCTGGAGA
CCTGCAGGAGATTGAAAAATTCCAGCCCTTGTTATAAATTTTTAAAAGATTGTGAAATTA
TCAAAATGCACATGAATCAAGTTTTAATATGCTGTATGATGGGTGGATGAGGCTGTCCAT
TATACCATTTCTTTCTTTGAATTCTCAGGCATGGTTTGGCAGTGCAAGAACTCTGTAACA
TTAACAAATTCAATAAAAAGTAAATATATGGAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGGTTAAGTAACCTAAAATATGCGTTAGAATTGTGAGATGTCTCATGAATTTGCCAATC
CCTAGAGTGGAACCAAATAGCCTTTGATGTAAAGGGCAGTGGCTGCAGGGGGCTCTACTT
CAGGTGCTGCTAAAGCCTCCTCTAATCAGGTCTAAACTGTGTAGTAAACTGCAGTGGAAA
GAGGATGGTTTCTGCTCAGGCCAAGGGATTCACTGATCTGTCCTTACAAATTCAGAACAG
TGTGAGCAGAACCTCAACCCAAAACCCATTTTAACGTTTCATGGATCTCACATGATCTTT
GACAAGGATTCCAGATATACTTGTGCCCAAAGGTATTGAACAGTGATTGTCCCAATGTAG
TTCTGTTATCAACCTTCTTGTGTCTTTATATTGTTTATTTGGAGAGTCAGGGGCGAAAGA
CAGGTGACGTAGCACTTCTGTTTTTAATAATTACAGCTTAAACTATCCAGTAATTTTTAG
TCCTAAAAAGGGACATCAGGAAGTTACCCGGGATTACTGACAAAAGTCTTTCCATTTGAT
GAGATAGTCTGGTAATTTCCTAGTTTTGTATCTTTGGTTGAGTAAAAATATTTCAAAGTG
GCATGTGACCACTTGATGCAGAGTCTGGGTTTCTCTATAATAAATCCCTTTGCCAAATGC
AGGAGTTGCAGACTTGCTACTGGCAAGAGTGAAGCAAATGGGTGAGTAAAACTATCCTGA
TGTGGGAACATTTTTTCTCTAGGAGTTGTCTTGATAAAGGTGACAATGCAGGAATCGCAC
TTCTAGGAGGGCTACAGTTTCACCTGACAGGACCTGCCAACCATATCTGGGCAATAATGT
TGGCATTATTTGAGGTGGTAGGCAGGATGCCTATATTCTAATAGATTTGGTTGAGTAGCT
GAGCCAGCTGAGGAGAGGTTGGATGATTGAAAAACAAAGGATTCTTGGTTAATCTGAAGG
TTTCGTTTGGGAACCAACAGTCTTTTAACAGAAAATCTCCTGGATCTTGAGCTACATGTT
TTCCCTGAAAAGTATGCATTTTTTCCAGCAAAATTTTGCTGGGGTTATGTTTTTGAAGAA
TGAACTGAGATGAATATGTGGAACTGTTATTAATGGCATACTGTCCTAGAAACCTGGAGA
CCTGCAGGAGATTGAAAAATTCCAGCCCTTGTTATAAATTTTTAAAAGATTGTGAAATTA
TCAAAATGCACATGAATCAAGTTTTAATATGCTGTATGATGGGTGGATGAGGCTGTCCAT
TATACCATTTCTTTCTTTGAATTCTCAGGCATGGTTTGGCAGTGCAAGAACTCTGTAACA
TTAACAAATTCAATAAAAAGTAAATATATGGAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               8-331, gnl|bosTau2|chr1 (58164931-58165252)
               

               
               8-331, gnl|Hg17|chr3 (134790466-134790786)
               

               
               8-331, gnl|Mm7|chr9 (103068449-103068136)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-331, gnl|bosTau2|chr1 (58164931-58165252)
               

               
               8-331, gnl|Hg17|chr3 (134790466-134790786)
               

               
               8-331, gnl|Mm7|chr9 (103068449-103068136)

Expressed library(ies): 27 entry(ies)

More info

Expressed library(ies): 27 entry(ies)

Help | Less info


               
               fce (0.543183)
               

               
               fat (0.442282)
               

               
               nms (0.427716)
               

               
               isp (0.300752)
               

               
               liv (0.292569)
               

               
               ldo (0.291008)
               

               
               ste (0.270416)
               

               
               tra (0.246184)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               mgm (0.180343)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               cut (0.169924)
               

               
               tbr (0.154178)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               eru (0.120048)

Expressed library(ies): 27 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.543183)
               

               
               fat (0.442282)
               

               
               nms (0.427716)
               

               
               isp (0.300752)
               

               
               liv (0.292569)
               

               
               ldo (0.291008)
               

               
               ste (0.270416)
               

               
               tra (0.246184)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               mgm (0.180343)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               cut (0.169924)
               

               
               tbr (0.154178)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               eru (0.120048)

	8-331, gnl\|bosTau2\|chr1 (58164931-58165252)
	8-331, gnl\|Hg17\|chr3 (134790466-134790786)
	8-331, gnl\|Mm7\|chr9 (103068449-103068136)

	fce (0.543183)
	fat (0.442282)
	nms (0.427716)
	isp (0.300752)
	liv (0.292569)
	ldo (0.291008)
	ste (0.270416)
	tra (0.246184)
	mgp (0.230681)
	spc (0.226732)
	tes (0.207814)
	hea (0.204499)
	fcc (0.197785)
	mgm (0.180343)
	ton (0.1755)
	fbs (0.175346)
	cut (0.169924)
	tbr (0.154178)
	eli (0.151814)
	cag (0.151194)
	lun (0.150489)
	bfe (0.149858)
	ski (0.146735)
	thg (0.126791)
	bla (0.124347)
	cly (0.120642)
	eru (0.120048)