Ss1.1-Pig4-TMW8047O23.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTTCTCTGCTTTGCGGCGGGGATCGCAGGTGTGCAGTCTTGCCGGCCCCCCCAGGCCTG AGAAGCATGAAGCTGCTGTGTTTGGTGGCGGTGGTCGCGAGTCTGCTGGTGCCCCCAGCC CAAGCCAACAAGAGTTCTGAAGATATCCGGTGCAAATGCATCTGCCCACCGTATAGAAAC ATCAGTGGACACATTTATAACCAGAATGTGTCACAGAAGGACTGCAACTGCCTGCATGTG GTGGAGCCCATGCCGGTGCCGGGCCACGACGTGGAGGCCTACTGCCTGCTGTGCGAGTGC AAGTACGAGGAGCGGAGCACCACCACCATCAAGATTATCATCGTCATCTACCTGTCAGTG GTGGGCGCCCTCCTGCTCTACATGGCCTTCCTGATGCTGGTGGACCCTCTGATTCGAAAG CCCGACGCCTATACCGAGAGACTGCACAACGAGGAGGAGAACGAGGATGCTCGCTCTGTG GCGGCCGCCGCCTCCTTCGGGCCCCGGGCAAACACGGTCCTGGAGCGCGTGGAGGGCGCT CAGCAGCGGTGGAAGCTGCAGGTGCAGGAGCAGCGGAAGACGGTCTTCGATCGGCACAAG ATGCTCAGCTAAGTGGCCGGCGCAGCCAAGTCATGGTCAAGGCCAGGGCCGGATGGTGCT GGGGCCACCGTCCCGCTCAGTGCCACCTCTGGGTCTTCCCTTTAAAGCCCGAGGCATTTT TTCTTCTCCCTTATTTAGAAATGTGCTCAGCCAGTTAACCTGGGACGCGTGCTGGGTCCC TGGTCTCAGTTTGCCTGCTTGGGGGTTTGGGGGAGGGGGGTGCCACAGGCCAGGAGGTGG GGGGGGGCTCCGACTGTCTCCTTGCTGTCCCCGTCACCACTTTCCCGGCTCCAGATCTTG GGAAGTGAGTGTGTGAGAGGAAGGCACCACCAGCTTCCTGCCGACACAACTCCTCAGCCC AGCTTGGCCGCATTCCAGCCCTCACCGGCTCTGCCGGCAGGGCAGATGCCACAGCCCTGC TGTGGCCCTCAGGGCACACCTGGATGCTGTTCCAGTTTCCCTTCCCTGCCCTTTGCTCCT GCTGCCGCCGCTGTGGGCAGAGCCCAGGACCTTGCTCAGTTCAGGAAGCCAGAGGTGCCC CCGCCCCGGCTGGCAGCTGCTGAGCATTGGTGGGACAACAGGCCCCCGAGGCTGAGGTGG CTCTGAGCACCTGGGCCCCTGTCCTGGGTCACACTTGTCCCTGCATTTTGTTGTACCAGT GCATGCAGAGAAATGTCATCCTTCCATCACCTGTGAATCAAGGAAGCGTCATTAAATTGT CTTTATTTCTCTCAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTTCTCTGCTTTGCGGCGGGGATCGCAGGTGTGCAGTCTTGCCGGCCCCCCCAGGCCTG AGAAGCATGAAGCTGCTGTGTTTGGTGGCGGTGGTCGCGAGTCTGCTGGTGCCCCCAGCC CAAGCCAACAAGAGTTCTGAAGATATCCGGTGCAAATGCATCTGCCCACCGTATAGAAAC ATCAGTGGACACATTTATAACCAGAATGTGTCACAGAAGGACTGCAACTGCCTGCATGTG GTGGAGCCCATGCCGGTGCCGGGCCACGACGTGGAGGCCTACTGCCTGCTGTGCGAGTGC AAGTACGAGGAGCGGAGCACCACCACCATCAAGATTATCATCGTCATCTACCTGTCAGTG GTGGGCGCCCTCCTGCTCTACATGGCCTTCCTGATGCTGGTGGACCCTCTGATTCGAAAG CCCGACGCCTATACCGAGAGACTGCACAACGAGGAGGAGAACGAGGATGCTCGCTCTGTG GCGGCCGCCGCCTCCTTCGGGCCCCGGGCAAACACGGTCCTGGAGCGCGTGGAGGGCGCT CAGCAGCGGTGGAAGCTGCAGGTGCAGGAGCAGCGGAAGACGGTCTTCGATCGGCACAAG ATGCTCAGCTAAGTGGCCGGCGCAGCCAAGTCATGGTCAAGGCCAGGGCCGGATGGTGCT GGGGCCACCGTCCCGCTCAGTGCCACCTCTGGGTCTTCCCTTTAAAGCCCGAGGCATTTT TTCTTCTCCCTTATTTAGAAATGTGCTCAGCCAGTTAACCTGGGACGCGTGCTGGGTCCC TGGTCTCAGTTTGCCTGCTTGGGGGTTTGGGGGAGGGGGGTGCCACAGGCCAGGAGGTGG GGGGGGGCTCCGACTGTCTCCTTGCTGTCCCCGTCACCACTTTCCCGGCTCCAGATCTTG GGAAGTGAGTGTGTGAGAGGAAGGCACCACCAGCTTCCTGCCGACACAACTCCTCAGCCC AGCTTGGCCGCATTCCAGCCCTCACCGGCTCTGCCGGCAGGGCAGATGCCACAGCCCTGC TGTGGCCCTCAGGGCACACCTGGATGCTGTTCCAGTTTCCCTTCCCTGCCCTTTGCTCCT GCTGCCGCCGCTGTGGGCAGAGCCCAGGACCTTGCTCAGTTCAGGAAGCCAGAGGTGCCC CCGCCCCGGCTGGCAGCTGCTGAGCATTGGTGGGACAACAGGCCCCCGAGGCTGAGGTGG CTCTGAGCACCTGGGCCCCTGTCCTGGGTCACACTTGTCCCTGCATTTTGTTGTACCAGT GCATGCAGAGAAATGTCATCCTTCCATCACCTGTGAATCAAGGAAGCGTCATTAAATTGT CTTTATTTCTCTCAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 30-132, - strand, RNAz p=0.678848 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 30-132, - strand, RNAz p=0.678848 |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 27-132, gnl|bosTau2|chr16 (48785089-48784983) | |
| 27-132, gnl|canFam2|chr7 (4681912-4681798) | |
| 27-132, gnl|dasNov1|scaffold_54604 (8594-8709) | |
| 27-132, gnl|echTel1|scaffold_313622 (1026-916) | |
| 27-132, gnl|hg17|chr1 (197854629-197854744) | |
| 27-132, gnl|Hg17|chr1 (197854747-197854643) | |
| 27-132, gnl|mm7|chr1 (135904831-135904716) | |
| 27-132, gnl|Mm7|chr1 (135904711-135904815) | |
| 27-132, gnl|monDom2|scaffold_13 (394373-394489) | |
| 27-132, gnl|panTro1|chr1 (180545494-180545611) | |
| 27-132, gnl|rheMac2|chr1 (169337931-169337816) | |
| 27-132, gnl|rn3|chr13 (49074818-49074703) | |
| 224-333, gnl|bosTau2|chr16 (48780391-48780282) | |
| 224-333, gnl|canFam2|chr7 (4688745-4688607) | |
| 224-333, gnl|danRer3|chr8 (21155359-21155477) | |
| 224-333, gnl|dasNov1|scaffold_54604 (1239-1376) | |
| 224-333, gnl|echTel1|scaffold_203161 (949-1093) | |
| 224-333, gnl|fr1|chrUn (19922677-19922797) | |
| 224-333, gnl|galGal2|chr32 (217160-217289) | |
| 224-333, gnl|hg17|chr1 (197847515-197847655) | |
| 224-333, gnl|Hg17|chr1 (197847634-197847525) | |
| 224-333, gnl|loxAfr1|scaffold_53589 (6958-6817) | |
| 224-333, gnl|mm7|chr1 (135910946-135910806) | |
| 224-333, gnl|Mm7|chr1 (135910825-135910934) | |
| 224-333, gnl|monDom2|scaffold_13 (383587-383715) | |
| 224-333, gnl|oryCun1|scaffold_194642 (4799-4935) | |
| 224-333, gnl|panTro1|chr1 (180538371-180538509) | |
| 224-333, gnl|rheMac2|chr1 (169345009-169344869) | |
| 224-333, gnl|rn3|chr13 (49080702-49080562) | |
| 224-333, gnl|tetNig1|chr9 (3662517-3662650) | |
| 464-785, gnl|bosTau2|chr16 (48774388-48774076) | |
| 464-785, gnl|Hg17|chr1 (197836602-197836247) | |
| 464-785, gnl|Mm7|chr1 (135920274-135920590) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 27-132, gnl|bosTau2|chr16 (48785089-48784983) | |
| 27-132, gnl|canFam2|chr7 (4681912-4681798) | |
| 27-132, gnl|dasNov1|scaffold_54604 (8594-8709) | |
| 27-132, gnl|echTel1|scaffold_313622 (1026-916) | |
| 27-132, gnl|hg17|chr1 (197854629-197854744) | |
| 27-132, gnl|Hg17|chr1 (197854747-197854643) | |
| 27-132, gnl|mm7|chr1 (135904831-135904716) | |
| 27-132, gnl|Mm7|chr1 (135904711-135904815) | |
| 27-132, gnl|monDom2|scaffold_13 (394373-394489) | |
| 27-132, gnl|panTro1|chr1 (180545494-180545611) | |
| 27-132, gnl|rheMac2|chr1 (169337931-169337816) | |
| 27-132, gnl|rn3|chr13 (49074818-49074703) | |
| 224-333, gnl|bosTau2|chr16 (48780391-48780282) | |
| 224-333, gnl|canFam2|chr7 (4688745-4688607) | |
| 224-333, gnl|danRer3|chr8 (21155359-21155477) | |
| 224-333, gnl|dasNov1|scaffold_54604 (1239-1376) | |
| 224-333, gnl|echTel1|scaffold_203161 (949-1093) | |
| 224-333, gnl|fr1|chrUn (19922677-19922797) | |
| 224-333, gnl|galGal2|chr32 (217160-217289) | |
| 224-333, gnl|hg17|chr1 (197847515-197847655) | |
| 224-333, gnl|Hg17|chr1 (197847634-197847525) | |
| 224-333, gnl|loxAfr1|scaffold_53589 (6958-6817) | |
| 224-333, gnl|mm7|chr1 (135910946-135910806) | |
| 224-333, gnl|Mm7|chr1 (135910825-135910934) | |
| 224-333, gnl|monDom2|scaffold_13 (383587-383715) | |
| 224-333, gnl|oryCun1|scaffold_194642 (4799-4935) | |
| 224-333, gnl|panTro1|chr1 (180538371-180538509) | |
| 224-333, gnl|rheMac2|chr1 (169345009-169344869) | |
| 224-333, gnl|rn3|chr13 (49080702-49080562) | |
| 224-333, gnl|tetNig1|chr9 (3662517-3662650) | |
| 464-785, gnl|bosTau2|chr16 (48774388-48774076) | |
| 464-785, gnl|Hg17|chr1 (197836602-197836247) | |
| 464-785, gnl|Mm7|chr1 (135920274-135920590) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| fcc (0.39557) | |
| fty (0.351679) | |
| hyp (0.285673) | |
| med (0.232504) | |
| ece (0.229305) | |
| mcp (0.170648) | |
| cki (0.165235) | |
| cag (0.151194) | |
| nmm (0.132802) | |
| sug (0.127291) | |
| ecc (0.115035) | |
| cty (0.10408) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fcc (0.39557) | |
| fty (0.351679) | |
| hyp (0.285673) | |
| med (0.232504) | |
| ece (0.229305) | |
| mcp (0.170648) | |
| cki (0.165235) | |
| cag (0.151194) | |
| nmm (0.132802) | |
| sug (0.127291) | |
| ecc (0.115035) | |
| cty (0.10408) |