Non-Coding RNA Search

Ss1.1-Pig4-TMW8047P01.5

Sequence:


               
               GAATGGAGAATTTTGGTTACAAAAATCAGGTCAGTAGGCTCATTTCCATGTGCTTAAAAA
TGTTTTTGTTGCTATTACTCATTGATTAAGGGCTAGAGCAAGTATGAAATGTCTTTTTCC
TCCAAACAATCGGTTATTAATGATACATTGTTGGATTTGAGGGTTCCTACGATTGCTATG
TGGGTGGTGAATTAGAGTGGGGAGTTAGCTGGGAGGGATGACAAGGTTTCAGTTTTGGTT
TCTGTATTTTGTCAGTGTTCTTGCTAGCTACATTTTTGTTACTCTTATTGGCCAGGTAAA
TGTGTTATATTTAACCAGGTAAGTAGTTTAAAGGCAGAAATTTTTATTTGCAAATGTCCC
TACAAATTGGCCCATTTTAGTGGGTGGGAGAACAAAAAGGGATTACCTAACTTTAAAAAA
TAATTTAAATAACTTGCTAGTGGAAAAAAATCAGTTTTTGTCAATATTTTCTTAATCCGA
AATCACACTAGTAGTAATATGGTGATTTTTATTATTAGGAGTGTTGTCCCTCTAGAGTGG
CATTTCGTGACATTAATAGAAAACCCTTTTTTCCCACCCCTCCCCATCTTGAAATTTTCT
TTTTTAGGATGTTGGTTCCTGCACCCAAGAACTGACCCTATCACCTCTGCTCACGGTGGT
AAATATATCGTACATCTCTTGAAAGGGAAATATCCATGTCAGTTTCTTTCAAAGCAGAAG
AATGGCTACTTTTGAATGGGGAGGAAAGAAGACATTTTTCTTAATATCCTTTTTGTCCCA
TCTCTAAAATGGATAAACATCTCGATTTAGTTTTCCTTTAATTTCTCATTTAGAGTTTAG
CAACTCTCTTGGGTTGTTCTCCAAAATACTACTTCTATTTCAAAAACCATATCTGATTTT
AGAAACTGCTAACTTTAAAAGAAGAGGTAAATTTGCATTTACACTTAGACACTTTCTAAA
AACAGGGTGAACTTAATTGAAAATTTTTTCAGTGTTGTTAAGCTATTGTTATAGTAGCTG
CCCTATAGTTGCAAAAACATAAACTATAAAAACCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAATGGAGAATTTTGGTTACAAAAATCAGGTCAGTAGGCTCATTTCCATGTGCTTAAAAA
TGTTTTTGTTGCTATTACTCATTGATTAAGGGCTAGAGCAAGTATGAAATGTCTTTTTCC
TCCAAACAATCGGTTATTAATGATACATTGTTGGATTTGAGGGTTCCTACGATTGCTATG
TGGGTGGTGAATTAGAGTGGGGAGTTAGCTGGGAGGGATGACAAGGTTTCAGTTTTGGTT
TCTGTATTTTGTCAGTGTTCTTGCTAGCTACATTTTTGTTACTCTTATTGGCCAGGTAAA
TGTGTTATATTTAACCAGGTAAGTAGTTTAAAGGCAGAAATTTTTATTTGCAAATGTCCC
TACAAATTGGCCCATTTTAGTGGGTGGGAGAACAAAAAGGGATTACCTAACTTTAAAAAA
TAATTTAAATAACTTGCTAGTGGAAAAAAATCAGTTTTTGTCAATATTTTCTTAATCCGA
AATCACACTAGTAGTAATATGGTGATTTTTATTATTAGGAGTGTTGTCCCTCTAGAGTGG
CATTTCGTGACATTAATAGAAAACCCTTTTTTCCCACCCCTCCCCATCTTGAAATTTTCT
TTTTTAGGATGTTGGTTCCTGCACCCAAGAACTGACCCTATCACCTCTGCTCACGGTGGT
AAATATATCGTACATCTCTTGAAAGGGAAATATCCATGTCAGTTTCTTTCAAAGCAGAAG
AATGGCTACTTTTGAATGGGGAGGAAAGAAGACATTTTTCTTAATATCCTTTTTGTCCCA
TCTCTAAAATGGATAAACATCTCGATTTAGTTTTCCTTTAATTTCTCATTTAGAGTTTAG
CAACTCTCTTGGGTTGTTCTCCAAAATACTACTTCTATTTCAAAAACCATATCTGATTTT
AGAAACTGCTAACTTTAAAAGAAGAGGTAAATTTGCATTTACACTTAGACACTTTCTAAA
AACAGGGTGAACTTAATTGAAAATTTTTTCAGTGTTGTTAAGCTATTGTTATAGTAGCTG
CCCTATAGTTGCAAAAACATAAACTATAAAAACCTA

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-424, gnl|bosTau2|chr16 (13842497-13842912)
               

               
               1-424, gnl|Hg17|chr1 (220881557-220881126)
               

               
               1-424, gnl|Mm7|chr1 (181154853-181154423)
               


               
               458-1055, gnl|bosTau2|chr16 (13842916-13843499)
               

               
               458-1055, gnl|Hg17|chr1 (220881092-220880484)
               

               
               458-1055, gnl|Mm7|chr1 (181154422-181153872)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-424, gnl|bosTau2|chr16 (13842497-13842912)
               

               
               1-424, gnl|Hg17|chr1 (220881557-220881126)
               

               
               1-424, gnl|Mm7|chr1 (181154853-181154423)
               


               
               458-1055, gnl|bosTau2|chr16 (13842916-13843499)
               

               
               458-1055, gnl|Hg17|chr1 (220881092-220880484)
               

               
               458-1055, gnl|Mm7|chr1 (181154422-181153872)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tbr (0.154178)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.154178)

	1-424, gnl\|bosTau2\|chr16 (13842497-13842912)
	1-424, gnl\|Hg17\|chr1 (220881557-220881126)
	1-424, gnl\|Mm7\|chr1 (181154853-181154423)

	458-1055, gnl\|bosTau2\|chr16 (13842916-13843499)
	458-1055, gnl\|Hg17\|chr1 (220881092-220880484)
	458-1055, gnl\|Mm7\|chr1 (181154422-181153872)