Ss1.1-Pig4-TMW8047P05.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAAGCGAGGGCTGCGCTCGGGATGGGCGAGCCGGAGCCCGAGTCGGAGCAGATTCGTCT GAAGTGTATCCGTAAGGAAGGCTTCTTCACGGTGCCTCCGGAGCACAGGCTGGGACGGTG CCGGAGCGTGAAGGAGTTTGAGAAGCTCAATCGCATCGGGGAAGGCACCTACGGCATCGT GTATCGTGCCCGGGACACCCAGACGGACGAGATTGTTGCCCTGAAGAAAGTGCGGATGGA CAAGGAGAAGGACGGGGTCCCCATCAGCAGCCTTCGAGAGATCACGCTGCTCCTTCGCCT CCGCCATCCGAACATCGTGGAGCTGAAGGAGGTGGTTGTGGGGAACCACCTGGAGAGCAT CTTCCTGGTGATGGGTTACTGTGAGCAAGACCTGGCCAGCCTTCTGGAGAACATGCCGAC CCCCTTCTCTGAGGCCCAGGTCAAGTGCATTGTGCTGCAGGTGCTCCGGGGCCTCCAGTA TCTGCACCAGAACTTCATCATCCACAGGGATTTGAAGGTCTCCAACCTGCTCATGACGGA CAAGGGCTGCGTGAAGACAGCGGATTTCGGCCTGGCCCGGGCCTACGGCACGCCAGTGAA GCCCATGACCCCCAAGGTGGTCACCCTCTGGTACCGAGCCCCCGAACTGCTGCTGGGAAG CACCATGCAGACGCCCAGCATCGACATGTGGGCAGTGGGCTGCATCCTGGCCGAGCTGCT GGCCCACAAGCCCCTCCTCCCTGGCACTTCTGAGATCCACCAGGTGGACCTGATCGTGCA GCTGCTGGGGACCCCCAGCGAGAACATCTGGCCGGGCTTCTCCCAGCTGCCGCTGGTCGG CCAGTACAGCCTGCGGAAGCAGCCGTACAACAACCTCAAGCACAAGTTCCCGTGGCTCTC GGAGGCTGGCCTGCGCCTGCTGAACCTCCTCTTCATGTACGACCCCAAGAAAAGGGCGAC GGCCGGCGACTGCCTGGAGAGCTCCTACTTCAAGGAGAAGCCTCTGCCCTGCGAGCCGGA GCTCATGCCCACTTTCCCCCACCATCGCAACAAGCCTGCCCCCACGTCCTCGGGTGCCGA GAGCCAGAGCCGGCGCTGCAAGCCCTGACAGGCGGGGGCTCCTGGGACCCAGCTCGGCCC TCAGCTGAGCCCGACCGGCTGCTCCAGCTGACCGCCCACATCTGCGCCTCTGCCCAGTGC TGGCCCGGAACAGCAGGCTGTGGACACGCTGGGTGCACCCTGTAGGGCGGACGCTGAGGC TGGCCCGCCAGGCTGTGTGGCACCAACTGGTGGTTGCAGCTTGTTGCCACGCCCTCGGCC CCTCGCCTCCCAGGAGAAATCGCTGAGCCCGTCTTTGGGGGTGTCACTAGCCTAGGATGA GCAGACCCCACGTGGGCGCTCTTCTCCCTGCCTGAGCACCAGGGTCTGCCCAGGAAGGGA GAGGCTGAGGTGACCCCTGGTGAGCTGGCAGGACTCACTGCGGGAAGGAGGCATCAGGAG GGGCAGTCAGCCTGCTCTGAGCCCCAGGGTGAGAGCCTTGGGCTGGGGGCTGCTCCATGT CCCCACTCCCCAATGAGGCCCCGGGGGAAGGGGCACGCTTGGTGCTGGCTGGACCCCAGA GATAAATGCTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAAGCGAGGGCTGCGCTCGGGATGGGCGAGCCGGAGCCCGAGTCGGAGCAGATTCGTCT GAAGTGTATCCGTAAGGAAGGCTTCTTCACGGTGCCTCCGGAGCACAGGCTGGGACGGTG CCGGAGCGTGAAGGAGTTTGAGAAGCTCAATCGCATCGGGGAAGGCACCTACGGCATCGT GTATCGTGCCCGGGACACCCAGACGGACGAGATTGTTGCCCTGAAGAAAGTGCGGATGGA CAAGGAGAAGGACGGGGTCCCCATCAGCAGCCTTCGAGAGATCACGCTGCTCCTTCGCCT CCGCCATCCGAACATCGTGGAGCTGAAGGAGGTGGTTGTGGGGAACCACCTGGAGAGCAT CTTCCTGGTGATGGGTTACTGTGAGCAAGACCTGGCCAGCCTTCTGGAGAACATGCCGAC CCCCTTCTCTGAGGCCCAGGTCAAGTGCATTGTGCTGCAGGTGCTCCGGGGCCTCCAGTA TCTGCACCAGAACTTCATCATCCACAGGGATTTGAAGGTCTCCAACCTGCTCATGACGGA CAAGGGCTGCGTGAAGACAGCGGATTTCGGCCTGGCCCGGGCCTACGGCACGCCAGTGAA GCCCATGACCCCCAAGGTGGTCACCCTCTGGTACCGAGCCCCCGAACTGCTGCTGGGAAG CACCATGCAGACGCCCAGCATCGACATGTGGGCAGTGGGCTGCATCCTGGCCGAGCTGCT GGCCCACAAGCCCCTCCTCCCTGGCACTTCTGAGATCCACCAGGTGGACCTGATCGTGCA GCTGCTGGGGACCCCCAGCGAGAACATCTGGCCGGGCTTCTCCCAGCTGCCGCTGGTCGG CCAGTACAGCCTGCGGAAGCAGCCGTACAACAACCTCAAGCACAAGTTCCCGTGGCTCTC GGAGGCTGGCCTGCGCCTGCTGAACCTCCTCTTCATGTACGACCCCAAGAAAAGGGCGAC GGCCGGCGACTGCCTGGAGAGCTCCTACTTCAAGGAGAAGCCTCTGCCCTGCGAGCCGGA GCTCATGCCCACTTTCCCCCACCATCGCAACAAGCCTGCCCCCACGTCCTCGGGTGCCGA GAGCCAGAGCCGGCGCTGCAAGCCCTGACAGGCGGGGGCTCCTGGGACCCAGCTCGGCCC TCAGCTGAGCCCGACCGGCTGCTCCAGCTGACCGCCCACATCTGCGCCTCTGCCCAGTGC TGGCCCGGAACAGCAGGCTGTGGACACGCTGGGTGCACCCTGTAGGGCGGACGCTGAGGC TGGCCCGCCAGGCTGTGTGGCACCAACTGGTGGTTGCAGCTTGTTGCCACGCCCTCGGCC CCTCGCCTCCCAGGAGAAATCGCTGAGCCCGTCTTTGGGGGTGTCACTAGCCTAGGATGA GCAGACCCCACGTGGGCGCTCTTCTCCCTGCCTGAGCACCAGGGTCTGCCCAGGAAGGGA GAGGCTGAGGTGACCCCTGGTGAGCTGGCAGGACTCACTGCGGGAAGGAGGCATCAGGAG GGGCAGTCAGCCTGCTCTGAGCCCCAGGGTGAGAGCCTTGGGCTGGGGGCTGCTCCATGT CCCCACTCCCCAATGAGGCCCCGGGGGAAGGGGCACGCTTGGTGCTGGCTGGACCCCAGA GATAAATGCTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 6 entry(ies) | More info |
| Predicted RNA structure(s): 6 entry(ies) | Help | Less info |
| Predicted RNA structure(s): 6 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 9-109, gnl|bosTau2|chr18 (15458989-15459083) | |
| 9-109, gnl|Hg17|chr16 (88280606-88280706) | |
| 9-109, gnl|Mm7|chr8 (121865938-121866038) | |
| 254-357, gnl|bosTau2|chr18 (15462582-15462685) | |
| 254-357, gnl|canFam2|chr5 (66880479-66880387) | |
| 254-357, gnl|danRer3|chrUn (92170506-92170574) | |
| 254-357, gnl|dasNov1|scaffold_106586 (90-4) | |
| 254-357, gnl|fr1|chrUn (235173751-235173828) | |
| 254-357, gnl|galGal2|chr11 (18756055-18755961) | |
| 254-357, gnl|hg17|chr16 (88285327-88285419) | |
| 254-357, gnl|Hg17|chr16 (88285351-88285454) | |
| 254-357, gnl|loxAfr1|scaffold_69189 (14714-14804) | |
| 254-357, gnl|mm7|chr8 (121868470-121868560) | |
| 254-357, gnl|Mm7|chr8 (121868492-121868595) | |
| 254-357, gnl|monDom2|scaffold_23 (6139503-6139434) | |
| 254-357, gnl|panTro1|chr18 (83305625-83305717) | |
| 254-357, gnl|rheMac2|chr20 (87816082-87816174) | |
| 254-357, gnl|rn3|chr19 (53552993-53553083) | |
| 254-357, gnl|tetNig1|chr13 (786913-786845) | |
| 254-357, gnl|xenTro1|scaffold_519 (899057-899129) | |
| 458-795, gnl|bosTau2|chr19 (26941505-26941854) | |
| 458-795, gnl|canFam2|chr5 (43835082-43834602) | |
| 458-795, gnl|danRer3|chr12 (665581-665117) | |
| 458-795, gnl|dasNov1|scaffold_122170 (3577-4072) | |
| 458-795, gnl|echTel1|scaffold_284977 (6089-6568) | |
| 458-795, gnl|fr1|chrUn (113245533-113246009) | |
| 458-795, gnl|hg17|chr17 (19224475-19224958) | |
| 458-795, gnl|Hg17|chr17 (19224608-19224957) | |
| 458-795, gnl|loxAfr1|scaffold_42400 (10729-10249) | |
| 458-795, gnl|mm7|chr11 (61573279-61572802) | |
| 458-795, gnl|Mm7|chr11 (61573150-61572801) | |
| 458-795, gnl|monDom2|scaffold_19 (7467268-7467761) | |
| 458-795, gnl|oryCun1|scaffold_136184 (10283-9808) | |
| 458-795, gnl|panTro1|chr19 (19550177-19550660) | |
| 458-795, gnl|rheMac2|chr16 (18931466-18931949) | |
| 458-795, gnl|rn3|chr10 (47665740-47665263) | |
| 458-795, gnl|tetNig1|chr15 (7019167-7019644) | |
| 458-795, gnl|xenTro1|scaffold_284 (10676-10204) | |
| 814-955, gnl|bosTau2|chr18 (15464931-15465072) | |
| 814-955, gnl|Hg17|chr16 (88288839-88288980) | |
| 814-955, gnl|Mm7|chr8 (121871861-121872002) | |
| 1008-1118, gnl|bosTau2|chr18 (15465487-15465603) | |
| 1008-1118, gnl|Hg17|chr16 (88289504-88289638) | |
| 1008-1118, gnl|Mm7|chr8 (121872704-121872808) | |
| 1163-1593, gnl|bosTau2|chr18 (15465607-15466071) | |
| 1163-1593, gnl|Hg17|chr16 (88289642-88290203) | |
| 1163-1593, gnl|Mm7|chr8 (121872809-121873292) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 9-109, gnl|bosTau2|chr18 (15458989-15459083) | |
| 9-109, gnl|Hg17|chr16 (88280606-88280706) | |
| 9-109, gnl|Mm7|chr8 (121865938-121866038) | |
| 254-357, gnl|bosTau2|chr18 (15462582-15462685) | |
| 254-357, gnl|canFam2|chr5 (66880479-66880387) | |
| 254-357, gnl|danRer3|chrUn (92170506-92170574) | |
| 254-357, gnl|dasNov1|scaffold_106586 (90-4) | |
| 254-357, gnl|fr1|chrUn (235173751-235173828) | |
| 254-357, gnl|galGal2|chr11 (18756055-18755961) | |
| 254-357, gnl|hg17|chr16 (88285327-88285419) | |
| 254-357, gnl|Hg17|chr16 (88285351-88285454) | |
| 254-357, gnl|loxAfr1|scaffold_69189 (14714-14804) | |
| 254-357, gnl|mm7|chr8 (121868470-121868560) | |
| 254-357, gnl|Mm7|chr8 (121868492-121868595) | |
| 254-357, gnl|monDom2|scaffold_23 (6139503-6139434) | |
| 254-357, gnl|panTro1|chr18 (83305625-83305717) | |
| 254-357, gnl|rheMac2|chr20 (87816082-87816174) | |
| 254-357, gnl|rn3|chr19 (53552993-53553083) | |
| 254-357, gnl|tetNig1|chr13 (786913-786845) | |
| 254-357, gnl|xenTro1|scaffold_519 (899057-899129) | |
| 458-795, gnl|bosTau2|chr19 (26941505-26941854) | |
| 458-795, gnl|canFam2|chr5 (43835082-43834602) | |
| 458-795, gnl|danRer3|chr12 (665581-665117) | |
| 458-795, gnl|dasNov1|scaffold_122170 (3577-4072) | |
| 458-795, gnl|echTel1|scaffold_284977 (6089-6568) | |
| 458-795, gnl|fr1|chrUn (113245533-113246009) | |
| 458-795, gnl|hg17|chr17 (19224475-19224958) | |
| 458-795, gnl|Hg17|chr17 (19224608-19224957) | |
| 458-795, gnl|loxAfr1|scaffold_42400 (10729-10249) | |
| 458-795, gnl|mm7|chr11 (61573279-61572802) | |
| 458-795, gnl|Mm7|chr11 (61573150-61572801) | |
| 458-795, gnl|monDom2|scaffold_19 (7467268-7467761) | |
| 458-795, gnl|oryCun1|scaffold_136184 (10283-9808) | |
| 458-795, gnl|panTro1|chr19 (19550177-19550660) | |
| 458-795, gnl|rheMac2|chr16 (18931466-18931949) | |
| 458-795, gnl|rn3|chr10 (47665740-47665263) | |
| 458-795, gnl|tetNig1|chr15 (7019167-7019644) | |
| 458-795, gnl|xenTro1|scaffold_284 (10676-10204) | |
| 814-955, gnl|bosTau2|chr18 (15464931-15465072) | |
| 814-955, gnl|Hg17|chr16 (88288839-88288980) | |
| 814-955, gnl|Mm7|chr8 (121871861-121872002) | |
| 1008-1118, gnl|bosTau2|chr18 (15465487-15465603) | |
| 1008-1118, gnl|Hg17|chr16 (88289504-88289638) | |
| 1008-1118, gnl|Mm7|chr8 (121872704-121872808) | |
| 1163-1593, gnl|bosTau2|chr18 (15465607-15466071) | |
| 1163-1593, gnl|Hg17|chr16 (88289642-88290203) | |
| 1163-1593, gnl|Mm7|chr8 (121872809-121873292) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| cty (0.20816) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| cli (0.152812) | |
| hyp (0.142837) | |
| eep (0.122564) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| med (0.116252) | |
| jca (0.11396) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.20816) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| cli (0.152812) | |
| hyp (0.142837) | |
| eep (0.122564) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| med (0.116252) | |
| jca (0.11396) |