Non-Coding RNA Search

Ss1.1-Pig4-TMW8047P08.3

Sequence:


               
               ATTTGAAGACTTTGTGTTTCCTGGGCCACAGCAGGTGATGGTACAAATAGAAGAAGCTGG
GGTTTGCAAGGGCTTTCGGCCATTCCAGAGTAAACACTAAACTTGAGTTCCAGCCAGTTG
GCAAGTGTGGAAGTGTTTGAAGAATGGTAATGCAAGAAGGTTTCCCTACTCAGCTTTTTG
AACTGAGTGCAAGTAAGTGCCTGGCCAGCCAGTAGGACCAGTGTGGGCAGTTAGAAATGC
TTCTCCCTGTGGACAAGCCCCTGAAAGGGACATTCCATCTTCATTGGCCCACTCCAGTGG
TCACTGCCATCTAGAGATTAGCCCATGAAACTGGAAGAAACCCTTTGGGATGGTGAGTCT
CCAGCCTGCTGGGCATCTGGCAGGAATTGTGGATGATGGGGTAGGGATCCCCAGCCGGTA
CATAAGTGTAAATGAGGCCTCTGCAAATAGAAGAAAAAGGACAGATCAGTTTCCTACCTC
TGAGCCTTCTCTAGGGAGAATCATCATGGAATGTTGATAATTATCTGAAACATTTTAAGT
GTCCTTGTTGAATTCCTGTCCTGTCCATGAAGAATGAAATGACCAAGAAGCCACAGGCAC
CCATCCCAAATTTCCCCAGGAGCTGGAGTGATGCCAGAAGGGAAAAGAGTGAATGGCTCC
TCTGCCTTCTCAGAGCCACCAGAACGAGAGACTGGTTACTCTGGTTGTATCGTGTTAAAT
GTATTAGAAGCCATACATTCTTCTGTTTTCTCATTTCCAGTGTTTTCTGCTGTGTGGATG
AATAAAGTGGTATGTGCAAAATATTTGAAAGTCCTGAAGGGAAGGTGCTTTCCAAATACA
GTGTTCTTTTTAACTAATAAACTTACTATTTTTATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTGAAGACTTTGTGTTTCCTGGGCCACAGCAGGTGATGGTACAAATAGAAGAAGCTGG
GGTTTGCAAGGGCTTTCGGCCATTCCAGAGTAAACACTAAACTTGAGTTCCAGCCAGTTG
GCAAGTGTGGAAGTGTTTGAAGAATGGTAATGCAAGAAGGTTTCCCTACTCAGCTTTTTG
AACTGAGTGCAAGTAAGTGCCTGGCCAGCCAGTAGGACCAGTGTGGGCAGTTAGAAATGC
TTCTCCCTGTGGACAAGCCCCTGAAAGGGACATTCCATCTTCATTGGCCCACTCCAGTGG
TCACTGCCATCTAGAGATTAGCCCATGAAACTGGAAGAAACCCTTTGGGATGGTGAGTCT
CCAGCCTGCTGGGCATCTGGCAGGAATTGTGGATGATGGGGTAGGGATCCCCAGCCGGTA
CATAAGTGTAAATGAGGCCTCTGCAAATAGAAGAAAAAGGACAGATCAGTTTCCTACCTC
TGAGCCTTCTCTAGGGAGAATCATCATGGAATGTTGATAATTATCTGAAACATTTTAAGT
GTCCTTGTTGAATTCCTGTCCTGTCCATGAAGAATGAAATGACCAAGAAGCCACAGGCAC
CCATCCCAAATTTCCCCAGGAGCTGGAGTGATGCCAGAAGGGAAAAGAGTGAATGGCTCC
TCTGCCTTCTCAGAGCCACCAGAACGAGAGACTGGTTACTCTGGTTGTATCGTGTTAAAT
GTATTAGAAGCCATACATTCTTCTGTTTTCTCATTTCCAGTGTTTTCTGCTGTGTGGATG
AATAAAGTGGTATGTGCAAAATATTTGAAAGTCCTGAAGGGAAGGTGCTTTCCAAATACA
GTGTTCTTTTTAACTAATAAACTTACTATTTTTATA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               230-425, - strand, RNAz p=0.988219

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               230-425, - strand, RNAz p=0.988219

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               1-876, gnl|bosTau2|chr11 (36394849-36395717)
               

               
               1-876, gnl|canFam2|chr17 (42541235-42540700)
               

               
               1-876, gnl|dasNov1|scaffold_6556 (54012-53454)
               

               
               1-876, gnl|echTel1|scaffold_281266 (44399-44904)
               

               
               1-876, gnl|hg17|chr2 (85744036-85744575)
               

               
               1-876, gnl|Hg17|chr2 (85744877-85744038)
               

               
               1-876, gnl|loxAfr1|scaffold_122793 (6270-5715)
               

               
               1-876, gnl|mm7|chr6 (72371080-72370526)
               

               
               1-876, gnl|Mm7|chr6 (72370226-72371075)
               

               
               1-876, gnl|oryCun1|scaffold_175925 (52722-52199)
               

               
               1-876, gnl|panTro1|chr12 (88618957-88619496)
               

               
               1-876, gnl|rheMac2|chr13 (86177032-86177561)
               

               
               1-876, gnl|rn3|chr4 (105902812-105902257)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-876, gnl|bosTau2|chr11 (36394849-36395717)
               

               
               1-876, gnl|canFam2|chr17 (42541235-42540700)
               

               
               1-876, gnl|dasNov1|scaffold_6556 (54012-53454)
               

               
               1-876, gnl|echTel1|scaffold_281266 (44399-44904)
               

               
               1-876, gnl|hg17|chr2 (85744036-85744575)
               

               
               1-876, gnl|Hg17|chr2 (85744877-85744038)
               

               
               1-876, gnl|loxAfr1|scaffold_122793 (6270-5715)
               

               
               1-876, gnl|mm7|chr6 (72371080-72370526)
               

               
               1-876, gnl|Mm7|chr6 (72370226-72371075)
               

               
               1-876, gnl|oryCun1|scaffold_175925 (52722-52199)
               

               
               1-876, gnl|panTro1|chr12 (88618957-88619496)
               

               
               1-876, gnl|rheMac2|chr13 (86177032-86177561)
               

               
               1-876, gnl|rn3|chr4 (105902812-105902257)

Expressed library(ies): 15 entry(ies)

More info

Expressed library(ies): 15 entry(ies)

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               thg (0.253582)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               cje (0.165235)
               

               
               tbr (0.154178)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               ret (0.128733)
               

               
               bla (0.124347)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.253582)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               cje (0.165235)
               

               
               tbr (0.154178)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               ret (0.128733)
               

               
               bla (0.124347)

	1-876, gnl\|bosTau2\|chr11 (36394849-36395717)
	1-876, gnl\|canFam2\|chr17 (42541235-42540700)
	1-876, gnl\|dasNov1\|scaffold_6556 (54012-53454)
	1-876, gnl\|echTel1\|scaffold_281266 (44399-44904)
	1-876, gnl\|hg17\|chr2 (85744036-85744575)
	1-876, gnl\|Hg17\|chr2 (85744877-85744038)
	1-876, gnl\|loxAfr1\|scaffold_122793 (6270-5715)
	1-876, gnl\|mm7\|chr6 (72371080-72370526)
	1-876, gnl\|Mm7\|chr6 (72370226-72371075)
	1-876, gnl\|oryCun1\|scaffold_175925 (52722-52199)
	1-876, gnl\|panTro1\|chr12 (88618957-88619496)
	1-876, gnl\|rheMac2\|chr13 (86177032-86177561)
	1-876, gnl\|rn3\|chr4 (105902812-105902257)

	thg (0.253582)
	col (0.195008)
	sag (0.182715)
	rec (0.17307)
	cje (0.165235)
	tbr (0.154178)
	liv (0.146284)
	lin (0.145603)
	hyp (0.142837)
	lnt (0.142308)
	csk (0.140746)
	hlv (0.139256)
	ssp (0.13552)
	ret (0.128733)
	bla (0.124347)