Ss1.1-Pig4-TMW8047P09.3
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
ACAAAGCCCTTTGTGTGTCCTGTAGAAGGGTGCTGTGCCCGGTTCTCTGCGAGGAGCAGC CTCTACATTCACTCCAAGAAGCACCTGCAGGACGTGGCCCCAAAGAGCAGGTGCCCAGCC TCCAGCTGTGACAGGCTCTTTGCCTCCAAGCACAACGGGAAGGCGCACGTGGGCAGGCAG CCCCGCCGGCACCCAGACCTCTTCCCTCCGCTAGGAGCTCCGAGTGCCCTTACGCCCAGC AGTGACCTCAGTGGCCCAGGCCAGAGCGAGTTCAGCAACGTGGACCTGGCACTCCTCTTC TCCGACACGCCTGGTGACAATAGCGGTGCCGCTGGGGCCTCTGACGAGGCGCTAAGCGCT GGGATCCTGACGATTGATGTGACTTCCATGAGCTCCTCTCTGGGAGGGGACCTGCCCACT AGTCACACTTCCTTAGGGCCCATGGACCCGCTGGTCTTGGTGGCCCACAGTGACGTGCCT CCAGGCCCAGACAGCCCCCTCGTCCTTGGGACAGCGGCCACGGTCCTCCAGCAGCGCAGC TTCGCCATGGACGATACGCAAGGTGTAGGCGCAGGAGCGCTGGGCTGCTTGGTGGCTGTG CCTGTGAAGAGCTTGAGCCTGGACCCACCGGCTTTGACCTCCGGCAGCAGTTCGGCAGCG AACACCTGCATGCCAGCCTCTGCCAGCAGCACTCAGGGAAACACCAGTGTCCCAGAGCTG CTGGTTCCCATCAAAGTGGAAGCAGACTCGCCTCCTGGCCCCGACACCATCAGGCAGCAG GAGCGAAGCAGAGGGGCGCCTCGGCCTGTGCTGTCCAGCCCCGCAGAGGAGCACGGGCCC CAGACAGACGCGGGGCTTGGTGCGGGGACCAGCGGCCTCTCCCTGGAAGGTGGGGGCTCA GCAAGAACTGATTCCCGAGCCATTCAACTGGCCAAGAAAATAAAGCAGAAAGGAGCTGGG AGCAGCGCAGGAGCTACGGGGCCAGCTCAGACCCGAGGGAAAGATGATGACCCGGGCAGC CCCACTTGTGTGCCTGCCAGCCCGAGTGGCTGGGTGTGGGGCAGCCTCGTGGTGCTCAGC GTCCAGGTCCAGCTGCTGCAGGACGACCCTGCGGGTGAAGCAGGCCTGCCGCTGGCGCTC AGCCCCCAGCCCTCTGCCTTCCGCCCCCTGCTCGCCATCGATTTTCCCATCTACGTCCTC CAGGAGGTGCTTCCTGCAGCTGGAGGGGCTGCCGGGCCTGAGGACACGCAGCGCTCGGGG |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
ACAAAGCCCTTTGTGTGTCCTGTAGAAGGGTGCTGTGCCCGGTTCTCTGCGAGGAGCAGC CTCTACATTCACTCCAAGAAGCACCTGCAGGACGTGGCCCCAAAGAGCAGGTGCCCAGCC TCCAGCTGTGACAGGCTCTTTGCCTCCAAGCACAACGGGAAGGCGCACGTGGGCAGGCAG CCCCGCCGGCACCCAGACCTCTTCCCTCCGCTAGGAGCTCCGAGTGCCCTTACGCCCAGC AGTGACCTCAGTGGCCCAGGCCAGAGCGAGTTCAGCAACGTGGACCTGGCACTCCTCTTC TCCGACACGCCTGGTGACAATAGCGGTGCCGCTGGGGCCTCTGACGAGGCGCTAAGCGCT GGGATCCTGACGATTGATGTGACTTCCATGAGCTCCTCTCTGGGAGGGGACCTGCCCACT AGTCACACTTCCTTAGGGCCCATGGACCCGCTGGTCTTGGTGGCCCACAGTGACGTGCCT CCAGGCCCAGACAGCCCCCTCGTCCTTGGGACAGCGGCCACGGTCCTCCAGCAGCGCAGC TTCGCCATGGACGATACGCAAGGTGTAGGCGCAGGAGCGCTGGGCTGCTTGGTGGCTGTG CCTGTGAAGAGCTTGAGCCTGGACCCACCGGCTTTGACCTCCGGCAGCAGTTCGGCAGCG AACACCTGCATGCCAGCCTCTGCCAGCAGCACTCAGGGAAACACCAGTGTCCCAGAGCTG CTGGTTCCCATCAAAGTGGAAGCAGACTCGCCTCCTGGCCCCGACACCATCAGGCAGCAG GAGCGAAGCAGAGGGGCGCCTCGGCCTGTGCTGTCCAGCCCCGCAGAGGAGCACGGGCCC CAGACAGACGCGGGGCTTGGTGCGGGGACCAGCGGCCTCTCCCTGGAAGGTGGGGGCTCA GCAAGAACTGATTCCCGAGCCATTCAACTGGCCAAGAAAATAAAGCAGAAAGGAGCTGGG AGCAGCGCAGGAGCTACGGGGCCAGCTCAGACCCGAGGGAAAGATGATGACCCGGGCAGC CCCACTTGTGTGCCTGCCAGCCCGAGTGGCTGGGTGTGGGGCAGCCTCGTGGTGCTCAGC GTCCAGGTCCAGCTGCTGCAGGACGACCCTGCGGGTGAAGCAGGCCTGCCGCTGGCGCTC AGCCCCCAGCCCTCTGCCTTCCGCCCCCTGCTCGCCATCGATTTTCCCATCTACGTCCTC CAGGAGGTGCTTCCTGCAGCTGGAGGGGCTGCCGGGCCTGAGGACACGCAGCGCTCGGGG |
Coded protein: 1 entry(ies) | More info |
Aligned organism(s): 33 entry(ies) | More info |
Aligned organism(s): 33 entry(ies) | Help | Less info |
194-639, gnl|bosTau2|chr7 (16838491-16838046) | |
194-639, gnl|canFam2|chr20 (3651304-3651801) | |
194-639, gnl|danRer3|chr2 (44943899-44943343) | |
194-639, gnl|dasNov1|scaffold_50687 (6438-6923) | |
194-639, gnl|echTel1|scaffold_269529 (9223-8726) | |
194-639, gnl|galGal2|chr12 (10696132-10696629) | |
194-639, gnl|hg17|chr3 (127663276-127663773) | |
194-639, gnl|Hg17|chr3 (127663764-127663319) | |
194-639, gnl|loxAfr1|scaffold_37082 (6120-5620) | |
194-639, gnl|mm7|chr6 (90457833-90457336) | |
194-639, gnl|Mm7|chr6 (90457343-90457788) | |
194-639, gnl|monDom2|scaffold_5 (43587366-43586867) | |
194-639, gnl|oryCun1|scaffold_178400 (77972-77483) | |
194-639, gnl|panTro1|chr2 (129511657-129512154) | |
194-639, gnl|rheMac2|chr2 (46236785-46237282) | |
194-639, gnl|rn3|chr4 (124885725-124885228) | |
194-639, gnl|xenTro1|scaffold_368 (957917-957423) | |
715-886, gnl|bosTau2|chr7 (16838012-16837841) | |
715-886, gnl|canFam2|chr20 (3651085-3651303) | |
715-886, gnl|dasNov1|scaffold_50687 (6238-6437) | |
715-886, gnl|echTel1|scaffold_269529 (9438-9224) | |
715-886, gnl|galGal2|chr12 (10695915-10696131) | |
715-886, gnl|hg17|chr3 (127663060-127663275) | |
715-886, gnl|Hg17|chr3 (127663243-127663075) | |
715-886, gnl|loxAfr1|scaffold_37082 (6321-6121) | |
715-886, gnl|mm7|chr6 (90458052-90457834) | |
715-886, gnl|Mm7|chr6 (90457864-90458035) | |
715-886, gnl|monDom2|scaffold_5 (43587577-43587367) | |
715-886, gnl|oryCun1|scaffold_178400 (78177-77973) | |
715-886, gnl|panTro1|chr2 (129511441-129511656) | |
715-886, gnl|rheMac2|chr2 (46236569-46236784) | |
715-886, gnl|rn3|chr4 (124885938-124885726) | |
715-886, gnl|xenTro1|scaffold_368 (958136-957918) |
Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
194-639, gnl|bosTau2|chr7 (16838491-16838046) | |
194-639, gnl|canFam2|chr20 (3651304-3651801) | |
194-639, gnl|danRer3|chr2 (44943899-44943343) | |
194-639, gnl|dasNov1|scaffold_50687 (6438-6923) | |
194-639, gnl|echTel1|scaffold_269529 (9223-8726) | |
194-639, gnl|galGal2|chr12 (10696132-10696629) | |
194-639, gnl|hg17|chr3 (127663276-127663773) | |
194-639, gnl|Hg17|chr3 (127663764-127663319) | |
194-639, gnl|loxAfr1|scaffold_37082 (6120-5620) | |
194-639, gnl|mm7|chr6 (90457833-90457336) | |
194-639, gnl|Mm7|chr6 (90457343-90457788) | |
194-639, gnl|monDom2|scaffold_5 (43587366-43586867) | |
194-639, gnl|oryCun1|scaffold_178400 (77972-77483) | |
194-639, gnl|panTro1|chr2 (129511657-129512154) | |
194-639, gnl|rheMac2|chr2 (46236785-46237282) | |
194-639, gnl|rn3|chr4 (124885725-124885228) | |
194-639, gnl|xenTro1|scaffold_368 (957917-957423) | |
715-886, gnl|bosTau2|chr7 (16838012-16837841) | |
715-886, gnl|canFam2|chr20 (3651085-3651303) | |
715-886, gnl|dasNov1|scaffold_50687 (6238-6437) | |
715-886, gnl|echTel1|scaffold_269529 (9438-9224) | |
715-886, gnl|galGal2|chr12 (10695915-10696131) | |
715-886, gnl|hg17|chr3 (127663060-127663275) | |
715-886, gnl|Hg17|chr3 (127663243-127663075) | |
715-886, gnl|loxAfr1|scaffold_37082 (6321-6121) | |
715-886, gnl|mm7|chr6 (90458052-90457834) | |
715-886, gnl|Mm7|chr6 (90457864-90458035) | |
715-886, gnl|monDom2|scaffold_5 (43587577-43587367) | |
715-886, gnl|oryCun1|scaffold_178400 (78177-77973) | |
715-886, gnl|panTro1|chr2 (129511441-129511656) | |
715-886, gnl|rheMac2|chr2 (46236569-46236784) | |
715-886, gnl|rn3|chr4 (124885938-124885726) | |
715-886, gnl|xenTro1|scaffold_368 (958136-957918) |
Expressed library(ies): 3 entry(ies) | More info |
Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
ebs (0.118301) | |
med (0.116252) | |
jej (0.0989218) |