Ss1.1-Pig4-TMW8047P11.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCAAAACTGTGGAACCTCTGGAGTATTACAGGAGATTTTTAAAAGAGAACTGCCGACCTG ATGGAAGAGAACTTGGTGAATTCAGAACCACAACTGTCAATGTAGGTTCAATTGGTACTG CAGATGGTTCTTCTTTAGTGAAGCTGGGAAATACTACAGTAATTTGTGGAATTAAAGCAG AATTTGGAGCGCCACCAACAGATGCTCCTGATAAAGGATATATTGTTCCTAATGTGGATC TATCACCTCTGTGTTCCTGGAGATTTCGGTCTGGCCCTCCGGGAGAAGAGGCCCAAGTGG CCAGCCAGTTCATTGCAGATGTCATTGAAAATTCACAGATAATTCAGAAAGAGGACTTAT GCATTTCTCCAGGAAAGCTAGCTTGGGTTCTATATTGTGATCTCATTTGCCTCAACCACG ATGGAAACATTTTGGATGCCTGTACATTTGCTTTGTTAGCAGCTTTAAAAAATGTACAGT TGCCTGAAGTTAATATAAATGAAGAAACTGCTTTAGCAGAAGTTAATTTAAAGAAGAAAA GTTATTTGAATATTAGAACTCACCCAGTTGCAACTTCATTTGCTGTGTTTGATGATACTC TGCTTATAGTTGATCCTACTGAAGAGGAGGAACATCTGGCCACCGGAACCTTAACAGTAG TAATGGATGAGGAAGGCAAGCTATGCTGTCTTCACAAACCAGGTGGAAGTGGACTGACTG GAGCTAAACTTCAGGACTGTATGAGCCGAGCAGTTACAAGACATAAAGAAGTAAAAAAAC TGATGGATGAAGTATTTAAGAGTATGAAACCCAAATAAACCACCACATTTTCAAAACAAA TTTGTAAAAACTGTATTTGTTTACACTGTGCACAAACCTTTTATACTAAATAAATATCAA ACTACAGTCTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCAAAACTGTGGAACCTCTGGAGTATTACAGGAGATTTTTAAAAGAGAACTGCCGACCTG ATGGAAGAGAACTTGGTGAATTCAGAACCACAACTGTCAATGTAGGTTCAATTGGTACTG CAGATGGTTCTTCTTTAGTGAAGCTGGGAAATACTACAGTAATTTGTGGAATTAAAGCAG AATTTGGAGCGCCACCAACAGATGCTCCTGATAAAGGATATATTGTTCCTAATGTGGATC TATCACCTCTGTGTTCCTGGAGATTTCGGTCTGGCCCTCCGGGAGAAGAGGCCCAAGTGG CCAGCCAGTTCATTGCAGATGTCATTGAAAATTCACAGATAATTCAGAAAGAGGACTTAT GCATTTCTCCAGGAAAGCTAGCTTGGGTTCTATATTGTGATCTCATTTGCCTCAACCACG ATGGAAACATTTTGGATGCCTGTACATTTGCTTTGTTAGCAGCTTTAAAAAATGTACAGT TGCCTGAAGTTAATATAAATGAAGAAACTGCTTTAGCAGAAGTTAATTTAAAGAAGAAAA GTTATTTGAATATTAGAACTCACCCAGTTGCAACTTCATTTGCTGTGTTTGATGATACTC TGCTTATAGTTGATCCTACTGAAGAGGAGGAACATCTGGCCACCGGAACCTTAACAGTAG TAATGGATGAGGAAGGCAAGCTATGCTGTCTTCACAAACCAGGTGGAAGTGGACTGACTG GAGCTAAACTTCAGGACTGTATGAGCCGAGCAGTTACAAGACATAAAGAAGTAAAAAAAC TGATGGATGAAGTATTTAAGAGTATGAAACCCAAATAAACCACCACATTTTCAAAACAAA TTTGTAAAAACTGTATTTGTTTACACTGTGCACAAACCTTTTATACTAAATAAATATCAA ACTACAGTCTTC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
| 225-331, gnl|bosTau2|chr12 (14805248-14805354) | |
| 225-331, gnl|canFam2|chr25 (6684752-6684661) | |
| 225-331, gnl|canFam2|chr25 (6684512-6684751) | |
| 225-331, gnl|danRer3|chr10 (32309492-32309583) | |
| 225-331, gnl|dasNov1|scaffold_12459 (16830-16921) | |
| 225-331, gnl|dasNov1|scaffold_12459 (17071-16831) | |
| 225-331, gnl|echTel1|scaffold_316369 (55387-55478) | |
| 225-331, gnl|echTel1|scaffold_316369 (55540-55388) | |
| 225-331, gnl|fr1|chrUn (229944140-229944231) | |
| 225-331, gnl|galGal2|chr1 (164401741-164401650) | |
| 225-331, gnl|hg17|chr13 (36478056-36478147) | |
| 225-331, gnl|Hg17|chr13 (36478056-36478162) | |
| 225-331, gnl|hg17|chr6 (43782079-43782232) | |
| 225-331, gnl|loxAfr1|scaffold_6984 (56824-56733) | |
| 225-331, gnl|loxAfr1|scaffold_6984 (56585-56823) | |
| 225-331, gnl|mm7|chr3 (54861429-54861338) | |
| 225-331, gnl|mm7|chr3 (54861191-54861428) | |
| 225-331, gnl|Mm7|chr3 (54861427-54861321) | |
| 225-331, gnl|monDom2|scaffold_15 (48998665-48998756) | |
| 225-331, gnl|monDom2|scaffold_15 (48998903-48998666) | |
| 225-331, gnl|oryCun1|scaffold_209628 (131209-131300) | |
| 225-331, gnl|oryCun1|scaffold_209628 (131449-131210) | |
| 225-331, gnl|panTro1|chr14 (35711354-35711445) | |
| 225-331, gnl|panTro1|chr5 (44381948-44382101) | |
| 225-331, gnl|rheMac2|chr17 (16209505-16209596) | |
| 225-331, gnl|rheMac2|chr4 (43617789-43617943) | |
| 225-331, gnl|rn3|chr2 (143908505-143908414) | |
| 225-331, gnl|rn3|chr5 (64854842-64854690) | |
| 225-331, gnl|tetNig1|chr7 (2643663-2643754) | |
| 225-331, gnl|xenTro1|scaffold_570 (365282-365191) | |
| 474-595, gnl|bosTau2|chr12 (14806124-14806245) | |
| 474-595, gnl|canFam2|chr25 (6683365-6683226) | |
| 474-595, gnl|danRer3|chr10 (32312291-32312429) | |
| 474-595, gnl|dasNov1|scaffold_12459 (18811-18952) | |
| 474-595, gnl|echTel1|scaffold_316369 (55637-55757) | |
| 474-595, gnl|fr1|chrUn (229944638-229944773) | |
| 474-595, gnl|galGal2|chr1 (164400409-164400270) | |
| 474-595, gnl|hg17|chr13 (36480186-36480327) | |
| 474-595, gnl|Hg17|chr13 (36480193-36480314) | |
| 474-595, gnl|loxAfr1|scaffold_6984 (54206-54065) | |
| 474-595, gnl|mm7|chr3 (54859104-54858963) | |
| 474-595, gnl|Mm7|chr3 (54859095-54858974) | |
| 474-595, gnl|monDom2|scaffold_15 (49002450-49002583) | |
| 474-595, gnl|panTro1|chr14 (35713481-35713622) | |
| 474-595, gnl|rheMac2|chr17 (16211794-16211935) | |
| 474-595, gnl|rn3|chr2 (143906103-143905962) | |
| 474-595, gnl|tetNig1|chr7 (2644170-2644311) | |
| 474-595, gnl|xenTro1|scaffold_570 (360941-360802) | |
| 700-911, gnl|bosTau2|chr12 (14806833-14807043) | |
| 700-911, gnl|Hg17|chr13 (36481318-36481532) | |
| 700-911, gnl|Mm7|chr3 (54858105-54857896) |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 225-331, gnl|bosTau2|chr12 (14805248-14805354) | |
| 225-331, gnl|canFam2|chr25 (6684752-6684661) | |
| 225-331, gnl|canFam2|chr25 (6684512-6684751) | |
| 225-331, gnl|danRer3|chr10 (32309492-32309583) | |
| 225-331, gnl|dasNov1|scaffold_12459 (16830-16921) | |
| 225-331, gnl|dasNov1|scaffold_12459 (17071-16831) | |
| 225-331, gnl|echTel1|scaffold_316369 (55387-55478) | |
| 225-331, gnl|echTel1|scaffold_316369 (55540-55388) | |
| 225-331, gnl|fr1|chrUn (229944140-229944231) | |
| 225-331, gnl|galGal2|chr1 (164401741-164401650) | |
| 225-331, gnl|hg17|chr13 (36478056-36478147) | |
| 225-331, gnl|Hg17|chr13 (36478056-36478162) | |
| 225-331, gnl|hg17|chr6 (43782079-43782232) | |
| 225-331, gnl|loxAfr1|scaffold_6984 (56824-56733) | |
| 225-331, gnl|loxAfr1|scaffold_6984 (56585-56823) | |
| 225-331, gnl|mm7|chr3 (54861429-54861338) | |
| 225-331, gnl|mm7|chr3 (54861191-54861428) | |
| 225-331, gnl|Mm7|chr3 (54861427-54861321) | |
| 225-331, gnl|monDom2|scaffold_15 (48998665-48998756) | |
| 225-331, gnl|monDom2|scaffold_15 (48998903-48998666) | |
| 225-331, gnl|oryCun1|scaffold_209628 (131209-131300) | |
| 225-331, gnl|oryCun1|scaffold_209628 (131449-131210) | |
| 225-331, gnl|panTro1|chr14 (35711354-35711445) | |
| 225-331, gnl|panTro1|chr5 (44381948-44382101) | |
| 225-331, gnl|rheMac2|chr17 (16209505-16209596) | |
| 225-331, gnl|rheMac2|chr4 (43617789-43617943) | |
| 225-331, gnl|rn3|chr2 (143908505-143908414) | |
| 225-331, gnl|rn3|chr5 (64854842-64854690) | |
| 225-331, gnl|tetNig1|chr7 (2643663-2643754) | |
| 225-331, gnl|xenTro1|scaffold_570 (365282-365191) | |
| 474-595, gnl|bosTau2|chr12 (14806124-14806245) | |
| 474-595, gnl|canFam2|chr25 (6683365-6683226) | |
| 474-595, gnl|danRer3|chr10 (32312291-32312429) | |
| 474-595, gnl|dasNov1|scaffold_12459 (18811-18952) | |
| 474-595, gnl|echTel1|scaffold_316369 (55637-55757) | |
| 474-595, gnl|fr1|chrUn (229944638-229944773) | |
| 474-595, gnl|galGal2|chr1 (164400409-164400270) | |
| 474-595, gnl|hg17|chr13 (36480186-36480327) | |
| 474-595, gnl|Hg17|chr13 (36480193-36480314) | |
| 474-595, gnl|loxAfr1|scaffold_6984 (54206-54065) | |
| 474-595, gnl|mm7|chr3 (54859104-54858963) | |
| 474-595, gnl|Mm7|chr3 (54859095-54858974) | |
| 474-595, gnl|monDom2|scaffold_15 (49002450-49002583) | |
| 474-595, gnl|panTro1|chr14 (35713481-35713622) | |
| 474-595, gnl|rheMac2|chr17 (16211794-16211935) | |
| 474-595, gnl|rn3|chr2 (143906103-143905962) | |
| 474-595, gnl|tetNig1|chr7 (2644170-2644311) | |
| 474-595, gnl|xenTro1|scaffold_570 (360941-360802) | |
| 700-911, gnl|bosTau2|chr12 (14806833-14807043) | |
| 700-911, gnl|Hg17|chr13 (36481318-36481532) | |
| 700-911, gnl|Mm7|chr3 (54858105-54857896) |
| Expressed library(ies): 30 entry(ies) | More info |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
| cte (0.87822) | |
| bfe (0.599431) | |
| cmu (0.55918) | |
| nms (0.427716) | |
| amn (0.417711) | |
| rec (0.346141) | |
| ssp (0.271039) | |
| ret (0.257467) | |
| sug (0.254582) | |
| thg (0.253582) | |
| cbe (0.239234) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| sag (0.182715) | |
| sto (0.179824) | |
| gul (0.177588) | |
| cki (0.165235) | |
| lun (0.150489) | |
| isp (0.150376) | |
| lin (0.145603) | |
| spl (0.143184) | |
| hlv (0.139256) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| ova (0.129132) | |
| tra (0.123092) | |
| med (0.116252) | |
| spc (0.113366) | |
| nbm (0.0993246) |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (0.87822) | |
| bfe (0.599431) | |
| cmu (0.55918) | |
| nms (0.427716) | |
| amn (0.417711) | |
| rec (0.346141) | |
| ssp (0.271039) | |
| ret (0.257467) | |
| sug (0.254582) | |
| thg (0.253582) | |
| cbe (0.239234) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| sag (0.182715) | |
| sto (0.179824) | |
| gul (0.177588) | |
| cki (0.165235) | |
| lun (0.150489) | |
| isp (0.150376) | |
| lin (0.145603) | |
| spl (0.143184) | |
| hlv (0.139256) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| ova (0.129132) | |
| tra (0.123092) | |
| med (0.116252) | |
| spc (0.113366) | |
| nbm (0.0993246) |