Non-Coding RNA Search

Ss1.1-Pig4-TMW8047P12.3

Sequence:


               
               AAGTGAAACAAAAAAGCAAAAAACTCTTAAATATAAAGAAAGAAATCCCAACAGATGTGA
AACCCAGTTCCTTAGAGCTACCATACACTGCCCCCTTGGACAGTAAGCAACGTCGAAATC
TCCCAACCAAGATTCCTCTTCCAACTACGCTGACAAGTGGATCCAAACCACGGAATTCCC
AGAAAACAAAAGGTACAAATAAGTTAGTGGATAACAGGCCACCTGCCCTAGCAAAATTCC
TCCCAAATAGTCAAGAACTAGGCAACACCAGTAGCTCAGAAGGTGAAAAAGACTCTCCAC
CACCAGAGTGGGATTCGGTGCCCGTTCACAAGCCCGGCAGCTCTACCGATAGTCTTTATA
AACTTTCTCTGCAAACCCTCAACGCAGACATTTTTCTAAAACAACGCCCGGCCTCACCGC
CACCCGCCTCCCCGTCCCCGCCTGCCGCGCCGTGCCTGTTCGCACCCCGGGGTAGCTACA
GCAGCATCGTCAACAGCAGCCCCAGCAGTGACCCTAAAACAAAGCAGCCAAATGGAAGCA
AGCACAAACTGACAAAAGCAGCCTCGCTCCCTGGCAAGAACGGCAACCCCACTTTCGCTG
CAGTCACAGCCGGGTACGACAAGAGCCCAGGTGGGAATGGCTTTGCTAAAGTTTCTTCAA
GCAAAACAGATTTTTCCAGCAGCCTTGGCATTTCACACACTCCTGTTGACAGTGATGGCT
CGGACAGCTCGGGTCTGTGGAGTCCCGTCAGCAACCCCAGCAGCCCTGACTTCACCCCCC
TCAATTCCTTCTCGGCCTTTGGAAATTCTTTCAACCTAACTGGCGAAGTTTTTAGCAAGC
TCGGGTTACCGCGATCATGCAATCAGCCCTCACCAGGGAGCTGGAACGAGCTCAGCAGTG
GCCCCTCGTACTTTTGGGACTCTCCAGCGACAGAGCCAAGCCCTTCCTGGCCAGCCAGCT
CCAGCTCCCCGACCCATACAGCCACATCAATCCTTGGCAACACCAGCGGCCTGTGGTCCA
CCACACCATTCAGCAGCTCCATCTGGTCCAGCAACCTGAACAGCAGCCTCCCCTTCACCA
GCCCTGCCAACACGCTAACGAGCATCGGCCTCATGGGCCCGGAGAACTCAGCTCCTCACG
CTCCCTCCACCACCAGCCCCGCTGACGACCTGGGCCAGACCTACAACCCCTGGAGGATAT
GGAGCCCCACGATCGGGAGGAGGAGCTCTGACCCATGGTCTAATTCGCACTTCCCTCATG
AGAATTGAGATTAGGCAACAAAATCAAAATAAAAAAGTGGGGGCCCCTTGTCTAGATCAT
GATGTGCAAGTTTTTGAGACATCTTTCTAAGGCTTCCCAGTCCCCACCCTCCTCATCTTT
GCAGAATAGACTCAAGCAGGGCAGGCTTGTACCACTATGCTTCTTTCAGATCTTTCTTGC
AATTATGATAATATGAGATTTGCTGTTGTGCTTTTAGAGAAAAGTCTGGACTCAGCCACA
AACTCTGATAAGACCTGTACATCTGAAAATCTTAACTGTTACCACGTTTCCACCACCTGT
CTTCTCCCATTCTTTGTTTATCTGTATGAACACAAATTTGACATTACAGCTAAGGAAATA
ACTTGAGTTGAATCAGAAGTCCTGGCATGTGACAATTTTATTAAATTACCAAGTTTGGTT
TTTAATAATTTTGCAACATTATGCGCCAAGATCTAATTTTAAAACTGTATGAGGACTTTG
TGCTGAAAAATACAGAGTATTTTTTTAAAATAAGGCTGTCTTGGTTTAAAAGCAGATAAC
AGAAATGTAAGTCAACTTTAAGAACAGTGAATGAATGTAAAAACATTCGGTTGAGACCAT
ATGCATTTTCTGTGCTGTTTGTACTTGAGGTATGTAACATTTGTATACCTGAATTTATTT
TAAAGATAAACTGAAATGCACATAGCCAAGTCTTGAGATACAAGATTGAATGTGTATTTC
TTAAAAATACAACTTTGTGTTGTACTTTGAAATAAATGATGCTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGTGAAACAAAAAAGCAAAAAACTCTTAAATATAAAGAAAGAAATCCCAACAGATGTGA
AACCCAGTTCCTTAGAGCTACCATACACTGCCCCCTTGGACAGTAAGCAACGTCGAAATC
TCCCAACCAAGATTCCTCTTCCAACTACGCTGACAAGTGGATCCAAACCACGGAATTCCC
AGAAAACAAAAGGTACAAATAAGTTAGTGGATAACAGGCCACCTGCCCTAGCAAAATTCC
TCCCAAATAGTCAAGAACTAGGCAACACCAGTAGCTCAGAAGGTGAAAAAGACTCTCCAC
CACCAGAGTGGGATTCGGTGCCCGTTCACAAGCCCGGCAGCTCTACCGATAGTCTTTATA
AACTTTCTCTGCAAACCCTCAACGCAGACATTTTTCTAAAACAACGCCCGGCCTCACCGC
CACCCGCCTCCCCGTCCCCGCCTGCCGCGCCGTGCCTGTTCGCACCCCGGGGTAGCTACA
GCAGCATCGTCAACAGCAGCCCCAGCAGTGACCCTAAAACAAAGCAGCCAAATGGAAGCA
AGCACAAACTGACAAAAGCAGCCTCGCTCCCTGGCAAGAACGGCAACCCCACTTTCGCTG
CAGTCACAGCCGGGTACGACAAGAGCCCAGGTGGGAATGGCTTTGCTAAAGTTTCTTCAA
GCAAAACAGATTTTTCCAGCAGCCTTGGCATTTCACACACTCCTGTTGACAGTGATGGCT
CGGACAGCTCGGGTCTGTGGAGTCCCGTCAGCAACCCCAGCAGCCCTGACTTCACCCCCC
TCAATTCCTTCTCGGCCTTTGGAAATTCTTTCAACCTAACTGGCGAAGTTTTTAGCAAGC
TCGGGTTACCGCGATCATGCAATCAGCCCTCACCAGGGAGCTGGAACGAGCTCAGCAGTG
GCCCCTCGTACTTTTGGGACTCTCCAGCGACAGAGCCAAGCCCTTCCTGGCCAGCCAGCT
CCAGCTCCCCGACCCATACAGCCACATCAATCCTTGGCAACACCAGCGGCCTGTGGTCCA
CCACACCATTCAGCAGCTCCATCTGGTCCAGCAACCTGAACAGCAGCCTCCCCTTCACCA
GCCCTGCCAACACGCTAACGAGCATCGGCCTCATGGGCCCGGAGAACTCAGCTCCTCACG
CTCCCTCCACCACCAGCCCCGCTGACGACCTGGGCCAGACCTACAACCCCTGGAGGATAT
GGAGCCCCACGATCGGGAGGAGGAGCTCTGACCCATGGTCTAATTCGCACTTCCCTCATG
AGAATTGAGATTAGGCAACAAAATCAAAATAAAAAAGTGGGGGCCCCTTGTCTAGATCAT
GATGTGCAAGTTTTTGAGACATCTTTCTAAGGCTTCCCAGTCCCCACCCTCCTCATCTTT
GCAGAATAGACTCAAGCAGGGCAGGCTTGTACCACTATGCTTCTTTCAGATCTTTCTTGC
AATTATGATAATATGAGATTTGCTGTTGTGCTTTTAGAGAAAAGTCTGGACTCAGCCACA
AACTCTGATAAGACCTGTACATCTGAAAATCTTAACTGTTACCACGTTTCCACCACCTGT
CTTCTCCCATTCTTTGTTTATCTGTATGAACACAAATTTGACATTACAGCTAAGGAAATA
ACTTGAGTTGAATCAGAAGTCCTGGCATGTGACAATTTTATTAAATTACCAAGTTTGGTT
TTTAATAATTTTGCAACATTATGCGCCAAGATCTAATTTTAAAACTGTATGAGGACTTTG
TGCTGAAAAATACAGAGTATTTTTTTAAAATAAGGCTGTCTTGGTTTAAAAGCAGATAAC
AGAAATGTAAGTCAACTTTAAGAACAGTGAATGAATGTAAAAACATTCGGTTGAGACCAT
ATGCATTTTCTGTGCTGTTTGTACTTGAGGTATGTAACATTTGTATACCTGAATTTATTT
TAAAGATAAACTGAAATGCACATAGCCAAGTCTTGAGATACAAGATTGAATGTGTATTTC
TTAAAAATACAACTTTGTGTTGTACTTTGAAATAAATGATGCTTTTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9CSR0_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9CSR0_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1734-2028, + strand, RNAz p=0.992246

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1734-2028, + strand, RNAz p=0.992246

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               191-345, gnl|bosTau2|chr11 (3150050-3150204)
               

               
               191-345, gnl|Hg17|chr2 (97841246-97841092)
               

               
               191-345, gnl|Mm7|chr1 (37040474-37040320)
               


               
               501-646, gnl|bosTau2|chr11 (3153095-3153238)
               

               
               501-646, gnl|Hg17|chr2 (97835902-97835760)
               

               
               501-646, gnl|Mm7|chr1 (37036805-37036663)
               


               
               990-2028, gnl|bosTau2|chr11 (3156281-3157316)
               

               
               990-2028, gnl|Hg17|chr2 (97832361-97831322)
               

               
               990-2028, gnl|Mm7|chr1 (37034583-37033583)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               191-345, gnl|bosTau2|chr11 (3150050-3150204)
               

               
               191-345, gnl|Hg17|chr2 (97841246-97841092)
               

               
               191-345, gnl|Mm7|chr1 (37040474-37040320)
               


               
               501-646, gnl|bosTau2|chr11 (3153095-3153238)
               

               
               501-646, gnl|Hg17|chr2 (97835902-97835760)
               

               
               501-646, gnl|Mm7|chr1 (37036805-37036663)
               


               
               990-2028, gnl|bosTau2|chr11 (3156281-3157316)
               

               
               990-2028, gnl|Hg17|chr2 (97832361-97831322)
               

               
               990-2028, gnl|Mm7|chr1 (37034583-37033583)

Expressed library(ies): 21 entry(ies)

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Expressed library(ies): 21 entry(ies)

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               nms (0.213858)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	191-345, gnl\|bosTau2\|chr11 (3150050-3150204)
	191-345, gnl\|Hg17\|chr2 (97841246-97841092)
	191-345, gnl\|Mm7\|chr1 (37040474-37040320)

	501-646, gnl\|bosTau2\|chr11 (3153095-3153238)
	501-646, gnl\|Hg17\|chr2 (97835902-97835760)
	501-646, gnl\|Mm7\|chr1 (37036805-37036663)

	990-2028, gnl\|bosTau2\|chr11 (3156281-3157316)
	990-2028, gnl\|Hg17\|chr2 (97832361-97831322)
	990-2028, gnl\|Mm7\|chr1 (37034583-37033583)

	nms (0.213858)
	tes (0.207814)
	aor (0.195274)
	fty (0.17584)
	fbs (0.175346)
	rec (0.17307)
	fhi (0.169578)
	isp (0.150376)
	fat (0.147427)
	lin (0.145603)
	pty (0.142714)
	lnt (0.142308)
	pla (0.133672)
	lyg (0.133103)
	ute (0.132784)
	ret (0.128733)
	ese (0.126502)
	tra (0.123092)
	jca (0.11396)
	nbm (0.0993246)
	jej (0.0989218)