Ss1.1-Pig4-TMW8047P16.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACCGGAGCTGGAGCAGGAGGAGGGAGAGCCCGAGGTGAAGAAGCGCCGACTTCTGTGTGT GGAGTTTGCCTCGGTAGCGACTTGCGACGCTGCCGTGGCTCAGTGCTACCTGGCCGAGAA CGATTGGGAGATGGAAAGAGCGCTGAACTCCTACTTCGAGCCGGCCGTGGAGGAGAACGC TTTAAAAAGTCGTCCTGAGACCCCCAATGAGCCCGAGTCCTGTGTTGACTTAACCAAGGA AGAAACAAGTGATTCCTTTAGTTGTAAAACCAGCACATCTGAAAATGTTCAGCAAGAAGA TGGCAGTGTGTTCTCTTTCATTACCTGGAATATAGATGGATTGGACCTAAACAGTCTGCT CGAGAGGGCTCGAGGGGTGTGTTCCTATTTAGCATTGTACAGCCCAGATGTGATATTTCT ACAGGAAGTTATTCCCCCGTATTATACCTACCTTAAGAAGAAAGCAAGTAGTTATGAGAT TATTACAGGTAATGAAGAAGGATATTTCACAGCTATAATGTTGAAGAAATCGAGAGTGAA ATTTAAAAGCCAAGAGATTATTCCTTTTCCAAATACAAAAATGATGAGAAACCTTTTGTG TGTGCATGTGAGTGTGTCAGGAAATGAACTTTGCCTTATGACTTCTCACTTGGAGAGCAC CAGAGGGCATGCCGAGGAACGAATGAATCAGCTGAAAATGGTTTTAAAGAAAATGCAAGA GGCTCCAGAGTCAGCTACAGTTATATTTGCAGGAGATACAAATTTAAGGGATCAAGAAGT TACCAAATGTGGTGGCTTACCCAACAACATTTTGGATGTCTGGGAGTTTTTGGGCAAACC TAAGCATTGTCAGTATACATGGGATACCCAAATGAACTCTAATCTTGGAATAGCTGCTAC TTGTAAGCTTCGTTTTGATCGAATATTTTTTAGAGCAGCAGCAGAAGGCAGCCACATCAT TCCCCGAAGCTTGGACCTCCTTGGGTTGGAAAAACTGGACTGTGGTAGATTTCCTAGTGA TCACTGGGGTCTTCTGTGCAATTTAGATGTAATATTGTGAAATGCCTTTCAAATATGAGT TTTAAGTTTTCTGAATCATTTTGTTCTTTGTTTTTGCAAATAGAATTTCTACCCTCTTGG AGAGGTAGTTTAACATGGAGGAATTCATATACTGGATCATTGTAACAGAAGAGAAAACTA CTGTGATTTTATTTTGTGGATTGTGTCCTCAGATTTCATAACTAAATCTCAGTATTTATT TAAACTAAAGCATACCTGTGTTCTGAACATGTGGCCTCTTAATGAGGGGCTATTAGAGCT TGTAATAGTGCTCATAGCTGCTGGCTGGGTTTCAAGCAATGCCATGTTGTCTGTAGATGA GACTTTATATTGATTTATTTTTTAAATCCAGTACCCAAATAGTTAATATTTTAAATAAAT CTTTTAAAAAAAGGAGGTTACTGTATCCTGGGGATTGGATCTTTTAATAATATTTCACAG ATCCAGATAATCTTAAATGAAAAAGCTGTGATCATCTGCATTTAAGTAGACTGCAACTGT CCTGCATCAGACTTTATTTTTGTTAGTTAACAGTACCTATTTGGTAAGCTAGAAATGAAC TCATGATTTAAAATTCCTTAACTTCTGGAATTCCTGCTGTGGTGCAGTGGGTTAAGAATC TGACTACAGCACCTTGGGTTGCTGCAGAGGTGCAAGTTCGATCTCTGCCCCAGTGCAGTG GGTTAAAGGATCTGGCATTGCTGCAGGTACAGCTCAGATTCAGTCTCTGGCCCAGGAACT TCCACATGCCATGGTTGTGGCCATTAAAAAAAATTCCTTAACTTCTAAAAACTCATGTTT GTAATTATGTCACCAACAGAGGCAAATGGCTTGATAGTGATTAAAGTCTGTTTTATAGCA GCATTGGACTTTTTTCTAAGACGAAAATAAACATATAAAGAGAAACAGCCTTTTAGTTTT GCTACTTGTACAATTGAAATTTTTTCCAGAAGTGAATAAGGAATACTTCCCTGTGTGCTT TAAGGAAACATATTTTTTTCCCATAGGAGAATGTACTTTAAATAAAGAATTTTGGTTGTT AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACCGGAGCTGGAGCAGGAGGAGGGAGAGCCCGAGGTGAAGAAGCGCCGACTTCTGTGTGT GGAGTTTGCCTCGGTAGCGACTTGCGACGCTGCCGTGGCTCAGTGCTACCTGGCCGAGAA CGATTGGGAGATGGAAAGAGCGCTGAACTCCTACTTCGAGCCGGCCGTGGAGGAGAACGC TTTAAAAAGTCGTCCTGAGACCCCCAATGAGCCCGAGTCCTGTGTTGACTTAACCAAGGA AGAAACAAGTGATTCCTTTAGTTGTAAAACCAGCACATCTGAAAATGTTCAGCAAGAAGA TGGCAGTGTGTTCTCTTTCATTACCTGGAATATAGATGGATTGGACCTAAACAGTCTGCT CGAGAGGGCTCGAGGGGTGTGTTCCTATTTAGCATTGTACAGCCCAGATGTGATATTTCT ACAGGAAGTTATTCCCCCGTATTATACCTACCTTAAGAAGAAAGCAAGTAGTTATGAGAT TATTACAGGTAATGAAGAAGGATATTTCACAGCTATAATGTTGAAGAAATCGAGAGTGAA ATTTAAAAGCCAAGAGATTATTCCTTTTCCAAATACAAAAATGATGAGAAACCTTTTGTG TGTGCATGTGAGTGTGTCAGGAAATGAACTTTGCCTTATGACTTCTCACTTGGAGAGCAC CAGAGGGCATGCCGAGGAACGAATGAATCAGCTGAAAATGGTTTTAAAGAAAATGCAAGA GGCTCCAGAGTCAGCTACAGTTATATTTGCAGGAGATACAAATTTAAGGGATCAAGAAGT TACCAAATGTGGTGGCTTACCCAACAACATTTTGGATGTCTGGGAGTTTTTGGGCAAACC TAAGCATTGTCAGTATACATGGGATACCCAAATGAACTCTAATCTTGGAATAGCTGCTAC TTGTAAGCTTCGTTTTGATCGAATATTTTTTAGAGCAGCAGCAGAAGGCAGCCACATCAT TCCCCGAAGCTTGGACCTCCTTGGGTTGGAAAAACTGGACTGTGGTAGATTTCCTAGTGA TCACTGGGGTCTTCTGTGCAATTTAGATGTAATATTGTGAAATGCCTTTCAAATATGAGT TTTAAGTTTTCTGAATCATTTTGTTCTTTGTTTTTGCAAATAGAATTTCTACCCTCTTGG AGAGGTAGTTTAACATGGAGGAATTCATATACTGGATCATTGTAACAGAAGAGAAAACTA CTGTGATTTTATTTTGTGGATTGTGTCCTCAGATTTCATAACTAAATCTCAGTATTTATT TAAACTAAAGCATACCTGTGTTCTGAACATGTGGCCTCTTAATGAGGGGCTATTAGAGCT TGTAATAGTGCTCATAGCTGCTGGCTGGGTTTCAAGCAATGCCATGTTGTCTGTAGATGA GACTTTATATTGATTTATTTTTTAAATCCAGTACCCAAATAGTTAATATTTTAAATAAAT CTTTTAAAAAAAGGAGGTTACTGTATCCTGGGGATTGGATCTTTTAATAATATTTCACAG ATCCAGATAATCTTAAATGAAAAAGCTGTGATCATCTGCATTTAAGTAGACTGCAACTGT CCTGCATCAGACTTTATTTTTGTTAGTTAACAGTACCTATTTGGTAAGCTAGAAATGAAC TCATGATTTAAAATTCCTTAACTTCTGGAATTCCTGCTGTGGTGCAGTGGGTTAAGAATC TGACTACAGCACCTTGGGTTGCTGCAGAGGTGCAAGTTCGATCTCTGCCCCAGTGCAGTG GGTTAAAGGATCTGGCATTGCTGCAGGTACAGCTCAGATTCAGTCTCTGGCCCAGGAACT TCCACATGCCATGGTTGTGGCCATTAAAAAAAATTCCTTAACTTCTAAAAACTCATGTTT GTAATTATGTCACCAACAGAGGCAAATGGCTTGATAGTGATTAAAGTCTGTTTTATAGCA GCATTGGACTTTTTTCTAAGACGAAAATAAACATATAAAGAGAAACAGCCTTTTAGTTTT GCTACTTGTACAATTGAAATTTTTTCCAGAAGTGAATAAGGAATACTTCCCTGTGTGCTT TAAGGAAACATATTTTTTTCCCATAGGAGAATGTACTTTAAATAAAGAATTTTGGTTGTT AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
| 2-136, gnl|bosTau2|chr23 (26550949-26550815) | |
| 2-136, gnl|canFam2|chr35 (25723896-25723988) | |
| 2-136, gnl|danRer3|chr19 (44804759-44804673) | |
| 2-136, gnl|dasNov1|scaffold_3457 (45729-45821) | |
| 2-136, gnl|echTel1|scaffold_272800 (1219-1137) | |
| 2-136, gnl|fr1|chrUn (145929742-145929656) | |
| 2-136, gnl|galGal2|chr2 (90124826-90124734) | |
| 2-136, gnl|hg17|chr6 (24774903-24774995) | |
| 2-136, gnl|Hg17|chr6 (24775039-24774905) | |
| 2-136, gnl|loxAfr1|scaffold_20555 (735-827) | |
| 2-136, gnl|mm7|chr13 (24197735-24197643) | |
| 2-136, gnl|Mm7|chr13 (24197576-24197731) | |
| 2-136, gnl|monDom2|scaffold_3 (115173179-115173271) | |
| 2-136, gnl|oryCun1|scaffold_131195 (3461-3369) | |
| 2-136, gnl|panTro1|chr5 (25222798-25222890) | |
| 2-136, gnl|rheMac2|chr4 (24672860-24672952) | |
| 2-136, gnl|rn3|chr17 (47304434-47304526) | |
| 2-136, gnl|tetNig1|chr21_random (1688623-1688534) | |
| 2-136, gnl|xenTro1|scaffold_185 (1733016-1732924) | |
| 219-399, gnl|bosTau2|chr23 (26546859-26546673) | |
| 219-399, gnl|Hg17|chr6 (24766945-24766765) | |
| 219-399, gnl|Mm7|chr13 (24201814-24201991) | |
| 603-780, gnl|bosTau2|chr23 (26542690-26542513) | |
| 603-780, gnl|canFam2|chr35 (25715739-25715852) | |
| 603-780, gnl|danRer3|chr19 (44809233-44809120) | |
| 603-780, gnl|dasNov1|scaffold_3457 (37149-37262) | |
| 603-780, gnl|echTel1|scaffold_229041 (659-772) | |
| 603-780, gnl|fr1|chrUn (145931223-145931110) | |
| 603-780, gnl|galGal2|chr2 (90129844-90129731) | |
| 603-780, gnl|hg17|chr6 (24761187-24761300) | |
| 603-780, gnl|Hg17|chr6 (24761365-24761188) | |
| 603-780, gnl|loxAfr1|scaffold_8069 (59921-60034) | |
| 603-780, gnl|mm7|chr13 (24206365-24206252) | |
| 603-780, gnl|Mm7|chr13 (24206188-24206362) | |
| 603-780, gnl|monDom2|scaffold_3 (115156037-115156150) | |
| 603-780, gnl|oryCun1|scaffold_197966 (21071-21166) | |
| 603-780, gnl|panTro1|chr5 (25208752-25208865) | |
| 603-780, gnl|rheMac2|chr4 (24659019-24659132) | |
| 603-780, gnl|rn3|chr17 (47295424-47295537) | |
| 603-780, gnl|tetNig1|chr21_random (1690018-1689905) | |
| 603-780, gnl|xenTro1|scaffold_185 (1742207-1742094) | |
| 973-1516, gnl|bosTau2|chr15 (52736967-52736414) | |
| 973-1516, gnl|Hg17|chr6 (24759082-24758567) | |
| 973-1516, gnl|Mm7|chr13 (24207077-24207577) | |
| 1830-1965, gnl|bosTau2|chr23 (26539877-26539741) | |
| 1830-1965, gnl|canFam2|chr35 (25709618-25710079) | |
| 1830-1965, gnl|dasNov1|scaffold_3457 (34797-35203) | |
| 1830-1965, gnl|echTel1|scaffold_272800 (2830-2391) | |
| 1830-1965, gnl|hg17|chr6 (24758229-24758678) | |
| 1830-1965, gnl|Hg17|chr6 (24758453-24758296) | |
| 1830-1965, gnl|loxAfr1|scaffold_8069 (57476-57944) | |
| 1830-1965, gnl|mm7|chr13 (24207921-24207483) | |
| 1830-1965, gnl|Mm7|chr13 (24207690-24207860) | |
| 1830-1965, gnl|oryCun1|scaffold_176289 (40168-39729) | |
| 1830-1965, gnl|panTro1|chr5 (25205785-25206233) | |
| 1830-1965, gnl|rheMac2|chr4 (24656086-24656535) | |
| 1830-1965, gnl|rn3|chr17 (47293411-47293811) |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-136, gnl|bosTau2|chr23 (26550949-26550815) | |
| 2-136, gnl|canFam2|chr35 (25723896-25723988) | |
| 2-136, gnl|danRer3|chr19 (44804759-44804673) | |
| 2-136, gnl|dasNov1|scaffold_3457 (45729-45821) | |
| 2-136, gnl|echTel1|scaffold_272800 (1219-1137) | |
| 2-136, gnl|fr1|chrUn (145929742-145929656) | |
| 2-136, gnl|galGal2|chr2 (90124826-90124734) | |
| 2-136, gnl|hg17|chr6 (24774903-24774995) | |
| 2-136, gnl|Hg17|chr6 (24775039-24774905) | |
| 2-136, gnl|loxAfr1|scaffold_20555 (735-827) | |
| 2-136, gnl|mm7|chr13 (24197735-24197643) | |
| 2-136, gnl|Mm7|chr13 (24197576-24197731) | |
| 2-136, gnl|monDom2|scaffold_3 (115173179-115173271) | |
| 2-136, gnl|oryCun1|scaffold_131195 (3461-3369) | |
| 2-136, gnl|panTro1|chr5 (25222798-25222890) | |
| 2-136, gnl|rheMac2|chr4 (24672860-24672952) | |
| 2-136, gnl|rn3|chr17 (47304434-47304526) | |
| 2-136, gnl|tetNig1|chr21_random (1688623-1688534) | |
| 2-136, gnl|xenTro1|scaffold_185 (1733016-1732924) | |
| 219-399, gnl|bosTau2|chr23 (26546859-26546673) | |
| 219-399, gnl|Hg17|chr6 (24766945-24766765) | |
| 219-399, gnl|Mm7|chr13 (24201814-24201991) | |
| 603-780, gnl|bosTau2|chr23 (26542690-26542513) | |
| 603-780, gnl|canFam2|chr35 (25715739-25715852) | |
| 603-780, gnl|danRer3|chr19 (44809233-44809120) | |
| 603-780, gnl|dasNov1|scaffold_3457 (37149-37262) | |
| 603-780, gnl|echTel1|scaffold_229041 (659-772) | |
| 603-780, gnl|fr1|chrUn (145931223-145931110) | |
| 603-780, gnl|galGal2|chr2 (90129844-90129731) | |
| 603-780, gnl|hg17|chr6 (24761187-24761300) | |
| 603-780, gnl|Hg17|chr6 (24761365-24761188) | |
| 603-780, gnl|loxAfr1|scaffold_8069 (59921-60034) | |
| 603-780, gnl|mm7|chr13 (24206365-24206252) | |
| 603-780, gnl|Mm7|chr13 (24206188-24206362) | |
| 603-780, gnl|monDom2|scaffold_3 (115156037-115156150) | |
| 603-780, gnl|oryCun1|scaffold_197966 (21071-21166) | |
| 603-780, gnl|panTro1|chr5 (25208752-25208865) | |
| 603-780, gnl|rheMac2|chr4 (24659019-24659132) | |
| 603-780, gnl|rn3|chr17 (47295424-47295537) | |
| 603-780, gnl|tetNig1|chr21_random (1690018-1689905) | |
| 603-780, gnl|xenTro1|scaffold_185 (1742207-1742094) | |
| 973-1516, gnl|bosTau2|chr15 (52736967-52736414) | |
| 973-1516, gnl|Hg17|chr6 (24759082-24758567) | |
| 973-1516, gnl|Mm7|chr13 (24207077-24207577) | |
| 1830-1965, gnl|bosTau2|chr23 (26539877-26539741) | |
| 1830-1965, gnl|canFam2|chr35 (25709618-25710079) | |
| 1830-1965, gnl|dasNov1|scaffold_3457 (34797-35203) | |
| 1830-1965, gnl|echTel1|scaffold_272800 (2830-2391) | |
| 1830-1965, gnl|hg17|chr6 (24758229-24758678) | |
| 1830-1965, gnl|Hg17|chr6 (24758453-24758296) | |
| 1830-1965, gnl|loxAfr1|scaffold_8069 (57476-57944) | |
| 1830-1965, gnl|mm7|chr13 (24207921-24207483) | |
| 1830-1965, gnl|Mm7|chr13 (24207690-24207860) | |
| 1830-1965, gnl|oryCun1|scaffold_176289 (40168-39729) | |
| 1830-1965, gnl|panTro1|chr5 (25205785-25206233) | |
| 1830-1965, gnl|rheMac2|chr4 (24656086-24656535) | |
| 1830-1965, gnl|rn3|chr17 (47293411-47293811) |
| Expressed library(ies): 31 entry(ies) | More info |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
| lin (1.01922) | |
| kid (0.778412) | |
| cbe (0.478469) | |
| sto (0.359648) | |
| rec (0.346141) | |
| sme (0.305437) | |
| jej (0.296765) | |
| che (0.272628) | |
| fce (0.271592) | |
| ste (0.270416) | |
| ova (0.258264) | |
| tes (0.207814) | |
| cmu (0.186393) | |
| ill (0.175593) | |
| sin (0.174948) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| fat (0.147427) | |
| ski (0.146735) | |
| liv (0.146284) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| sug (0.127291) | |
| thg (0.126791) | |
| bla (0.124347) | |
| eru (0.120048) | |
| cbl (0.114797) | |
| nbm (0.0993246) |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lin (1.01922) | |
| kid (0.778412) | |
| cbe (0.478469) | |
| sto (0.359648) | |
| rec (0.346141) | |
| sme (0.305437) | |
| jej (0.296765) | |
| che (0.272628) | |
| fce (0.271592) | |
| ste (0.270416) | |
| ova (0.258264) | |
| tes (0.207814) | |
| cmu (0.186393) | |
| ill (0.175593) | |
| sin (0.174948) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| fat (0.147427) | |
| ski (0.146735) | |
| liv (0.146284) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| sug (0.127291) | |
| thg (0.126791) | |
| bla (0.124347) | |
| eru (0.120048) | |
| cbl (0.114797) | |
| nbm (0.0993246) |