Ss1.1-Pig4-TMW8047P18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTACCAGTTCAACTTCCACGAGGCCCAGCGGGCCTGTGAGGAACAGGATGCAGTGGTGGC CTCCTTTGAGCAGCTGTTCCGCGCCTGGGAGGAGGGCCTGGACTGGTGCAACGCAGGCTG GCTGCAGGACGCCTCGGTGCAGTACCCCATCACGCAGACCCGCCACCCCTGCGGCGGCCT GAGCCTGGCACCCGGCGTGCGCAGCTATGGCCCGCGTCACCGCCGCCGACACCGCTATGA TGTGTTCTGCTTTGCGGCTGCCCTCAGGGGACAGGTGTACTACCTGGAGCACCCTGAGAA GCTGACGCTGGCAGAGGCAAAGGAGGCCTGCCAGGAAGATGGCGCCCAGATCGCCAAGGT GGGCCAGCTCTTTGCCGCCTGGAAGTTCCGTGGCCTGGACCGCTGCGATGCTGGGTGGCT GGCAGATGGCAGTGCCCGCTACCCAGTGGCTCACCCGCGTTCCAACTGTGGGTCTGTGGA GCCTGGTGTCCGAAGCTTTGGCTTCCCAGACCCACAGAGCCGCAACTATGGCGTCTATTG CCACCGCCCACGCTAGTACCCAGGCATCAGCTTTGTGCCCACCCCTGCCTCCTCCCCTCA CGGGCTGTATTTATTACATAGTTCATTTTCCCCTTGCAGGTTGGGGCAATTTTCATTTTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTACCAGTTCAACTTCCACGAGGCCCAGCGGGCCTGTGAGGAACAGGATGCAGTGGTGGC CTCCTTTGAGCAGCTGTTCCGCGCCTGGGAGGAGGGCCTGGACTGGTGCAACGCAGGCTG GCTGCAGGACGCCTCGGTGCAGTACCCCATCACGCAGACCCGCCACCCCTGCGGCGGCCT GAGCCTGGCACCCGGCGTGCGCAGCTATGGCCCGCGTCACCGCCGCCGACACCGCTATGA TGTGTTCTGCTTTGCGGCTGCCCTCAGGGGACAGGTGTACTACCTGGAGCACCCTGAGAA GCTGACGCTGGCAGAGGCAAAGGAGGCCTGCCAGGAAGATGGCGCCCAGATCGCCAAGGT GGGCCAGCTCTTTGCCGCCTGGAAGTTCCGTGGCCTGGACCGCTGCGATGCTGGGTGGCT GGCAGATGGCAGTGCCCGCTACCCAGTGGCTCACCCGCGTTCCAACTGTGGGTCTGTGGA GCCTGGTGTCCGAAGCTTTGGCTTCCCAGACCCACAGAGCCGCAACTATGGCGTCTATTG CCACCGCCCACGCTAGTACCCAGGCATCAGCTTTGTGCCCACCCCTGCCTCCTCCCCTCA CGGGCTGTATTTATTACATAGTTCATTTTCCCCTTGCAGGTTGGGGCAATTTTCATTTTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 461-580, - strand, RNAz p=0.575233 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 461-580, - strand, RNAz p=0.575233 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-253, gnl|bosTau2|chr7 (55937506-55937758) | |
| 1-253, gnl|canFam2|chr3 (26955255-26954907) | |
| 1-253, gnl|danRer3|chr5 (52845269-52844932) | |
| 1-253, gnl|dasNov1|scaffold_29133 (3978-4326) | |
| 1-253, gnl|echTel1|scaffold_201770 (439-95) | |
| 1-253, gnl|fr1|chrUn (28440354-28440046) | |
| 1-253, gnl|galGal2|chrZ (29910261-29910619) | |
| 1-253, gnl|hg17|chr5 (82975915-82976263) | |
| 1-253, gnl|Hg17|chr5 (82976206-82975954) | |
| 1-253, gnl|loxAfr1|scaffold_10875 (51430-51775) | |
| 1-253, gnl|mm7|chr13 (86679896-86679547) | |
| 1-253, gnl|Mm7|chr13 (86679603-86679855) | |
| 1-253, gnl|monDom2|scaffold_20 (19669517-19669167) | |
| 1-253, gnl|oryCun1|scaffold_87313 (2252-1904) | |
| 1-253, gnl|panTro1|chr4 (32189349-32189001) | |
| 1-253, gnl|rheMac2|chr6 (79831847-79832195) | |
| 1-253, gnl|rn3|chr2 (19554088-19553739) | |
| 1-253, gnl|tetNig1|chrUn_random (535152-534843) | |
| 1-253, gnl|xenTro1|scaffold_73 (668082-667742) | |
| 261-660, gnl|bosTau2|chr21 (14833403-14833793) | |
| 261-660, gnl|Hg17|chr15 (87222498-87222114) | |
| 261-660, gnl|Mm7|chr7 (74980702-74980311) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-253, gnl|bosTau2|chr7 (55937506-55937758) | |
| 1-253, gnl|canFam2|chr3 (26955255-26954907) | |
| 1-253, gnl|danRer3|chr5 (52845269-52844932) | |
| 1-253, gnl|dasNov1|scaffold_29133 (3978-4326) | |
| 1-253, gnl|echTel1|scaffold_201770 (439-95) | |
| 1-253, gnl|fr1|chrUn (28440354-28440046) | |
| 1-253, gnl|galGal2|chrZ (29910261-29910619) | |
| 1-253, gnl|hg17|chr5 (82975915-82976263) | |
| 1-253, gnl|Hg17|chr5 (82976206-82975954) | |
| 1-253, gnl|loxAfr1|scaffold_10875 (51430-51775) | |
| 1-253, gnl|mm7|chr13 (86679896-86679547) | |
| 1-253, gnl|Mm7|chr13 (86679603-86679855) | |
| 1-253, gnl|monDom2|scaffold_20 (19669517-19669167) | |
| 1-253, gnl|oryCun1|scaffold_87313 (2252-1904) | |
| 1-253, gnl|panTro1|chr4 (32189349-32189001) | |
| 1-253, gnl|rheMac2|chr6 (79831847-79832195) | |
| 1-253, gnl|rn3|chr2 (19554088-19553739) | |
| 1-253, gnl|tetNig1|chrUn_random (535152-534843) | |
| 1-253, gnl|xenTro1|scaffold_73 (668082-667742) | |
| 261-660, gnl|bosTau2|chr21 (14833403-14833793) | |
| 261-660, gnl|Hg17|chr15 (87222498-87222114) | |
| 261-660, gnl|Mm7|chr7 (74980702-74980311) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cga (0.279096) |