Non-Coding RNA Search

Ss1.1-Pig4-TMW8047P20.5

Sequence:


               
               CGCACACCCGTGAGGGCTCCGTACCCACGGTGCGGAAGGTGGGCGTCTGGCTCCTAAATC
CTTCCCTTCTGGCGTGGTGTGGCTCTTTCGGCCTCAGTTTTTCCCTCCTGAGAAGTGGGG
ACGCCCTGAGTCCTCGCGCTAAAGCAGGCGCTCGGGGGATTCTCCAGACCCGGGGAGTTG
GGCGGGGCCGGACCCCGGAGGAGCCGCTCGACTCGAGGGGTTCCCCCCCCCCAGCCCCTT
ACGATGACCGCCCATATCCTCTTGCTGTGGCTCTTTGCTTCCTCCATCCTGGGGGACCCA
GACTCCGCGGGCAGGCTGACCCGGCACCAGGTTTCCCTAAAGAGCGGGCGCCTGTGTTCC
CTGGGCACTTGCCAGACGCACCGCCTGCCAGAGATCATATACTGGCTCCGTTTTGCCTCC
ACCAAGGAGCTCTCAGGGAAGGCTGGCCGCAAGCCTCAGGACCCCTACAGCTACGGGCGG
CGGCGGCGGCGGCGGCGGCGGCGGCGGGAGGCCAGACTCCTGCGGCGTCTCCAGGACCCC
AGCCTGCGCAGAGCGCAACTTGCTGGGTGACATTGGGCACATCTCTACGCCTTCCCTGGC
CTCAGTTTACCCATCTGTGTATTGAGGCTGTGACCTCAAGTTTCTTTTGCCCTAACTCCA
TCCACCTCCCCAGACTGCAATTGGGCTGGACCCACGTGCACACCGGACCCAGGCTGGACA
AAAAATGTTAACGTCCAGAGCTGAATAAATATACGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCACACCCGTGAGGGCTCCGTACCCACGGTGCGGAAGGTGGGCGTCTGGCTCCTAAATC
CTTCCCTTCTGGCGTGGTGTGGCTCTTTCGGCCTCAGTTTTTCCCTCCTGAGAAGTGGGG
ACGCCCTGAGTCCTCGCGCTAAAGCAGGCGCTCGGGGGATTCTCCAGACCCGGGGAGTTG
GGCGGGGCCGGACCCCGGAGGAGCCGCTCGACTCGAGGGGTTCCCCCCCCCCAGCCCCTT
ACGATGACCGCCCATATCCTCTTGCTGTGGCTCTTTGCTTCCTCCATCCTGGGGGACCCA
GACTCCGCGGGCAGGCTGACCCGGCACCAGGTTTCCCTAAAGAGCGGGCGCCTGTGTTCC
CTGGGCACTTGCCAGACGCACCGCCTGCCAGAGATCATATACTGGCTCCGTTTTGCCTCC
ACCAAGGAGCTCTCAGGGAAGGCTGGCCGCAAGCCTCAGGACCCCTACAGCTACGGGCGG
CGGCGGCGGCGGCGGCGGCGGCGGCGGGAGGCCAGACTCCTGCGGCGTCTCCAGGACCCC
AGCCTGCGCAGAGCGCAACTTGCTGGGTGACATTGGGCACATCTCTACGCCTTCCCTGGC
CTCAGTTTACCCATCTGTGTATTGAGGCTGTGACCTCAAGTTTCTTTTGCCCTAACTCCA
TCCACCTCCCCAGACTGCAATTGGGCTGGACCCACGTGCACACCGGACCCAGGCTGGACA
AAAAATGTTAACGTCCAGAGCTGAATAAATATACGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               84-191, + strand, RNAz p=0.813398

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               84-191, + strand, RNAz p=0.813398

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               7-315, gnl|bosTau2|chr18 (48775479-48775795)
               

               
               7-315, gnl|Hg17|chr19 (54884669-54884981)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-315, gnl|bosTau2|chr18 (48775479-48775795)
               

               
               7-315, gnl|Hg17|chr19 (54884669-54884981)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cov (0.264306)
               

               
               eje (0.0988338)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.264306)
               

               
               eje (0.0988338)

	7-315, gnl\|bosTau2\|chr18 (48775479-48775795)
	7-315, gnl\|Hg17\|chr19 (54884669-54884981)