Non-Coding RNA Search

Ss1.1-Pig4-TMW8047P23.5

Sequence:


               
               AGATCGCGACTGGAGTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTAAAAATTTTAA
CATCAGTACTTTTCTCTTAGGGGAAGAAATATTTCAGGGCTTGACTTTTTGTACAACTTT
TAACTGTAAAATACAGATTGTCTTCTATGTATTCATGAAAATGGAAATCAAAGCTGCTAG
TGCTTTTTATTTTAATTATCTCGCTAAGAGTATACGTCAACAGTCTTTTCAACTGGATCG
CTCATTTAAATTATTGGTGAAATAATTGATTACTTAGCCATATTGTAAAACCAATCAGTC
TTGGTTATACAATAAAATGTCGGTTCGTTGGTAGTCTGAATTAATTTCAAGTGTACCTTA
TTAACAAAATATCAGTGGATTCAGCATAAAATTTTATTACTAAATGTCAGGCTAACTGTG
AATTTTGTTCTGTCTCTTAAGTAAATTTATGATAATGTCCTCATGAGCTATCAACAAAAT
ATATGTACTTTTGTGAACTATGGATTTTCTAATTAAATTTTACATGCGACATGATTTTTA
CATGAATGATACTTTGTTTAAACTATCAAATGTCAGTATTTTACTACAATTTTATTATAA
AATGTACATTATCACTAAATGAACTTTGATTTTAAAAATCAAATTAGCTTTAGTTGTATA
TTATTTTTTACAAATAAAGATAGACTTGTATAAAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGATCGCGACTGGAGTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTAAAAATTTTAA
CATCAGTACTTTTCTCTTAGGGGAAGAAATATTTCAGGGCTTGACTTTTTGTACAACTTT
TAACTGTAAAATACAGATTGTCTTCTATGTATTCATGAAAATGGAAATCAAAGCTGCTAG
TGCTTTTTATTTTAATTATCTCGCTAAGAGTATACGTCAACAGTCTTTTCAACTGGATCG
CTCATTTAAATTATTGGTGAAATAATTGATTACTTAGCCATATTGTAAAACCAATCAGTC
TTGGTTATACAATAAAATGTCGGTTCGTTGGTAGTCTGAATTAATTTCAAGTGTACCTTA
TTAACAAAATATCAGTGGATTCAGCATAAAATTTTATTACTAAATGTCAGGCTAACTGTG
AATTTTGTTCTGTCTCTTAAGTAAATTTATGATAATGTCCTCATGAGCTATCAACAAAAT
ATATGTACTTTTGTGAACTATGGATTTTCTAATTAAATTTTACATGCGACATGATTTTTA
CATGAATGATACTTTGTTTAAACTATCAAATGTCAGTATTTTACTACAATTTTATTATAA
AATGTACATTATCACTAAATGAACTTTGATTTTAAAAATCAAATTAGCTTTAGTTGTATA
TTATTTTTTACAAATAAAGATAGACTTGTATAAAGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               222-375, - strand, RNAz p=0.770857

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               222-375, - strand, RNAz p=0.770857

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               254-339, + strand, RNAmicro p=0.977208

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               254-339, + strand, RNAmicro p=0.977208

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               24-696, gnl|bosTau2|chr13 (59951636-59950961)
               

               
               24-696, gnl|Hg17|chr20 (48803018-48803682)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               24-696, gnl|bosTau2|chr13 (59951636-59950961)
               

               
               24-696, gnl|Hg17|chr20 (48803018-48803682)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               kid (0.389206)
               

               
               fty (0.351679)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.389206)
               

               
               fty (0.351679)

	24-696, gnl\|bosTau2\|chr13 (59951636-59950961)
	24-696, gnl\|Hg17\|chr20 (48803018-48803682)