Non-Coding RNA Search

Ss1.1-Pig4-TMW8048A05.3

Sequence:


               
               GAGAAGCTGTTCTTTCCCACAAATGGACAGAAAGTTCTCAGCCTCTGGGGCTGAGAAGCA
GAACCAGGGTGGCTTCGCTTGCTCGTCTGCCTGGGAACCATGGGGCCCACCCCAGCTGGG
CAAGCACTCAGTGCCTCTGAATCTCCCCACTGGCTGGCCACCTCAGCTGTCAGCTGGATG
CCCCTGGCAAGAGCCTTGCACCCTCTGAATGCAAATGAATGATTCTGCCATCAGTTAGAC
ATCCCCTTGGTTCCCCAAAGTGCAGGTCTTTCTGAGCGCCTTTAGCTCATGCTGGTACCA
TTGTTCTGAAATTCACCAGCCCTGCCTTCTCTTCACGGCACAAGCAATGACTGATTTCAG
TGAAGCCATCCTAGCATTCTTGTTCCACTTTGTACAGAAGACAGTGAACCCCTGTCATTA
TAACAGTGACAATTACTTATTGTTAACAATACCCTGGACTGTCACTCAAGTACTGTACCT
TTTTGGTTGCACACATGTGTTACTAACTACAGTCTCACGATCTTATGGTGCTATTTTCAT
TGGTGCAAATGAAACCTTCTCAGTTGACCATGGCTTGATATTATCAGACACAGGGAAAGA
CCCACAATGGCAATAATATCATTGCTTTGTTCTCTTTACTTCATTTCAGAGTCAAATGTA
TATATTTTCCACTAGTTAACTTACATTACGTACTGTACCCATGGTATTTTTGTTTTACTT
TTTGGTGCTGGTTTGAAAGAAAAAAAAAGAACAGAAGACAAACATTGGACACCACTGTAA
ATGAGAAATTAATCATTTCATTGGAAGTGAGTTGACTATGTTTAATAAAATGTTTTTCCA
TAACAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAAGCTGTTCTTTCCCACAAATGGACAGAAAGTTCTCAGCCTCTGGGGCTGAGAAGCA
GAACCAGGGTGGCTTCGCTTGCTCGTCTGCCTGGGAACCATGGGGCCCACCCCAGCTGGG
CAAGCACTCAGTGCCTCTGAATCTCCCCACTGGCTGGCCACCTCAGCTGTCAGCTGGATG
CCCCTGGCAAGAGCCTTGCACCCTCTGAATGCAAATGAATGATTCTGCCATCAGTTAGAC
ATCCCCTTGGTTCCCCAAAGTGCAGGTCTTTCTGAGCGCCTTTAGCTCATGCTGGTACCA
TTGTTCTGAAATTCACCAGCCCTGCCTTCTCTTCACGGCACAAGCAATGACTGATTTCAG
TGAAGCCATCCTAGCATTCTTGTTCCACTTTGTACAGAAGACAGTGAACCCCTGTCATTA
TAACAGTGACAATTACTTATTGTTAACAATACCCTGGACTGTCACTCAAGTACTGTACCT
TTTTGGTTGCACACATGTGTTACTAACTACAGTCTCACGATCTTATGGTGCTATTTTCAT
TGGTGCAAATGAAACCTTCTCAGTTGACCATGGCTTGATATTATCAGACACAGGGAAAGA
CCCACAATGGCAATAATATCATTGCTTTGTTCTCTTTACTTCATTTCAGAGTCAAATGTA
TATATTTTCCACTAGTTAACTTACATTACGTACTGTACCCATGGTATTTTTGTTTTACTT
TTTGGTGCTGGTTTGAAAGAAAAAAAAAGAACAGAAGACAAACATTGGACACCACTGTAA
ATGAGAAATTAATCATTTCATTGGAAGTGAGTTGACTATGTTTAATAAAATGTTTTTCCA
TAACAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               169-278, - strand, RNAz p=0.833831

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               169-278, - strand, RNAz p=0.833831

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               131-846, gnl|bosTau2|chr21 (4824953-4824246)
               

               
               131-846, gnl|Hg17|chr15 (98330112-98329164)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               131-846, gnl|bosTau2|chr21 (4824953-4824246)
               

               
               131-846, gnl|Hg17|chr15 (98330112-98329164)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fco (0.157208)
               

               
               ova (0.129132)
               

               
               eru (0.120048)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fco (0.157208)
               

               
               ova (0.129132)
               

               
               eru (0.120048)

	131-846, gnl\|bosTau2\|chr21 (4824953-4824246)
	131-846, gnl\|Hg17\|chr15 (98330112-98329164)

	sag (0.182715)
	gul (0.177588)
	fco (0.157208)
	ova (0.129132)
	eru (0.120048)