Non-Coding RNA Search

Ss1.1-Pig4-TMW8048A09.5

Sequence:


               
               AGGATTCCCTTTGGTGCGCTATGCCTACAATCTCCCAAGAGTCAAAGACTGAATCCATGT
GTTTGTAACTGGTTCCCCCGTCAACCAAAATCACAGTCTTGGTAGAATGAACCTTAATCT
GATGTCTCATCTTGGAAGCACTTCTGTGATCACTGCCTGGTGTCACTTAAATAAGGAGAA
GGTGGCAGTTTATTTCTTAAACCAGACCTTTTCAAGGAACAAGTGCCTAAACTTATCAGC
TGATGAAAAAATGCAGTGTCCAAGCAATGTGTAGTCTATTCCAAACAAAATTTATAATTG
AAAAAGATTTTATGTATCTCATAGCAATATAATTTTGGGTTTTTCTGATCCATAGGCAGC
AAATTTATACCTGGTTTTCAATTCAGCACAGGATACAGAACAGCTGTTAATATTTTTTAA
GAATATTTTAAACGGTGATTTTATATAACTGAAAAACAGTCTTGCTCGTTTTACCTAATG
TCTCCCCATTAATCTCAGGACAACTTACTGCAGGGCCAAAAAAAGGGATTATTTCCCAGA
TAGAACTAGGAGAGTATATGTAGGCATTATCTTCTTGCATTTTCCATCTTTGACAAACTA
GAATCATCAATTTTGCTTGTTTAAGAGATTTATAAAATCTAAAACCCGAAGATGTTTTTA
AAACAATATTAACAACTGTCAGATTTTCAAAGAATACCTGAACACATGTGTCTTCAGTCA
TTATACTTTGCTTTGTTTCAATCAGAGTAAATTTTTTTCTTCCATTTTTGTGATCACACA
GCTAGGAAAAAGTAAAGCGATAATTGCTGCATGAGTTTAGTAAATTTGGCTAAACTACTA
ACATGGGATTTTAATGGTATCTGAGGGATTTGATGGCTTCCTGTAATGTTCTCATTGATA
AAACTCTTCCTAATATCATTGGCTTTACTCGTATATTCCAATTTTGTTGGTTATATTATC
TACCTATAGTTCAAATTATACAGAAAGTAAATTTTGGCAAATGATTTCATTTAGTTGGAA
TAAATTGGTAGTAATCATGACACAAAGCACTTACATTTACTTCTTAGCGAGCTGGATTCT
CTTAAACTTAGGCTATTATATGGATGCGTCCACACATTTTTCCCCTTACTGTGATTTACA
GGAGCCTGTGCAACAGCTCAGAAATGGTTCTTGTGAGACAAGACAAATATATTACTAAGA
AAAAAAAAAAAAGGAATAAAGTTTGGGCCTCTGTCTTTAAAAATTAAAAAATTTACTTGA
TTTTCATCTATAGACTTTTAACATGTCACTATGTGGAGTCTTAAAATCATAAATGTTCAA
TATGTTTTTTGAACAACATGCTAAATCAATAGCAAACCCACTGCCATACTAGTTATTCAG
GATATACTAAAAAACATTAAGCTAGATTGCAGTTTAATAATTAAACTGTACATAATGTGC
ATATAATGAATTTTTATCTTATGTAAATTATTTTTAGAACACAAGTTGGGAAATGTGGCT
TCTGTTCATTTCGTTTAATTAAAGCTACCTCCTAAACTATAGTGGCTGCCAGTAGCAGAA
TGTTAAATTGTGGTTTATATACTTTTTGCATTGTAAATAGTCTTGGTTGTACATTGTCAG
TGTAATAAAGACAGAATCTTTGTATATCAAAATCATGTAGTTTGTATAAAATGTGGGAGG
GATTTATTTACAGTGTGTTGTAATTTTGTAAGGCCAACTATTCACAAGTTTTTTAAATTG
CTATCCTGTTTGTATATTACACATCTGATAAATATTAAATCATAACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGATTCCCTTTGGTGCGCTATGCCTACAATCTCCCAAGAGTCAAAGACTGAATCCATGT
GTTTGTAACTGGTTCCCCCGTCAACCAAAATCACAGTCTTGGTAGAATGAACCTTAATCT
GATGTCTCATCTTGGAAGCACTTCTGTGATCACTGCCTGGTGTCACTTAAATAAGGAGAA
GGTGGCAGTTTATTTCTTAAACCAGACCTTTTCAAGGAACAAGTGCCTAAACTTATCAGC
TGATGAAAAAATGCAGTGTCCAAGCAATGTGTAGTCTATTCCAAACAAAATTTATAATTG
AAAAAGATTTTATGTATCTCATAGCAATATAATTTTGGGTTTTTCTGATCCATAGGCAGC
AAATTTATACCTGGTTTTCAATTCAGCACAGGATACAGAACAGCTGTTAATATTTTTTAA
GAATATTTTAAACGGTGATTTTATATAACTGAAAAACAGTCTTGCTCGTTTTACCTAATG
TCTCCCCATTAATCTCAGGACAACTTACTGCAGGGCCAAAAAAAGGGATTATTTCCCAGA
TAGAACTAGGAGAGTATATGTAGGCATTATCTTCTTGCATTTTCCATCTTTGACAAACTA
GAATCATCAATTTTGCTTGTTTAAGAGATTTATAAAATCTAAAACCCGAAGATGTTTTTA
AAACAATATTAACAACTGTCAGATTTTCAAAGAATACCTGAACACATGTGTCTTCAGTCA
TTATACTTTGCTTTGTTTCAATCAGAGTAAATTTTTTTCTTCCATTTTTGTGATCACACA
GCTAGGAAAAAGTAAAGCGATAATTGCTGCATGAGTTTAGTAAATTTGGCTAAACTACTA
ACATGGGATTTTAATGGTATCTGAGGGATTTGATGGCTTCCTGTAATGTTCTCATTGATA
AAACTCTTCCTAATATCATTGGCTTTACTCGTATATTCCAATTTTGTTGGTTATATTATC
TACCTATAGTTCAAATTATACAGAAAGTAAATTTTGGCAAATGATTTCATTTAGTTGGAA
TAAATTGGTAGTAATCATGACACAAAGCACTTACATTTACTTCTTAGCGAGCTGGATTCT
CTTAAACTTAGGCTATTATATGGATGCGTCCACACATTTTTCCCCTTACTGTGATTTACA
GGAGCCTGTGCAACAGCTCAGAAATGGTTCTTGTGAGACAAGACAAATATATTACTAAGA
AAAAAAAAAAAAGGAATAAAGTTTGGGCCTCTGTCTTTAAAAATTAAAAAATTTACTTGA
TTTTCATCTATAGACTTTTAACATGTCACTATGTGGAGTCTTAAAATCATAAATGTTCAA
TATGTTTTTTGAACAACATGCTAAATCAATAGCAAACCCACTGCCATACTAGTTATTCAG
GATATACTAAAAAACATTAAGCTAGATTGCAGTTTAATAATTAAACTGTACATAATGTGC
ATATAATGAATTTTTATCTTATGTAAATTATTTTTAGAACACAAGTTGGGAAATGTGGCT
TCTGTTCATTTCGTTTAATTAAAGCTACCTCCTAAACTATAGTGGCTGCCAGTAGCAGAA
TGTTAAATTGTGGTTTATATACTTTTTGCATTGTAAATAGTCTTGGTTGTACATTGTCAG
TGTAATAAAGACAGAATCTTTGTATATCAAAATCATGTAGTTTGTATAAAATGTGGGAGG
GATTTATTTACAGTGTGTTGTAATTTTGTAAGGCCAACTATTCACAAGTTTTTTAAATTG
CTATCCTGTTTGTATATTACACATCTGATAAATATTAAATCATAACTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-893, gnl|bosTau2|chr15 (36602228-36603126)
               

               
               1-893, gnl|Hg17|chr11 (27346041-27345154)
               

               
               1-893, gnl|Mm7|chr2 (109863263-109864163)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-893, gnl|bosTau2|chr15 (36602228-36603126)
               

               
               1-893, gnl|Hg17|chr11 (27346041-27345154)
               

               
               1-893, gnl|Mm7|chr2 (109863263-109864163)

Expressed library(ies): 16 entry(ies)

More info

Expressed library(ies): 16 entry(ies)

Help | Less info


               
               ret (1.41607)
               

               
               lin (0.728014)
               

               
               kid (0.518941)
               

               
               tra (0.492368)
               

               
               amn (0.417711)
               

               
               rec (0.346141)
               

               
               bfe (0.299715)
               

               
               mgp (0.230681)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               jej (0.0989218)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (1.41607)
               

               
               lin (0.728014)
               

               
               kid (0.518941)
               

               
               tra (0.492368)
               

               
               amn (0.417711)
               

               
               rec (0.346141)
               

               
               bfe (0.299715)
               

               
               mgp (0.230681)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               jej (0.0989218)

	1-893, gnl\|bosTau2\|chr15 (36602228-36603126)
	1-893, gnl\|Hg17\|chr11 (27346041-27345154)
	1-893, gnl\|Mm7\|chr2 (109863263-109864163)

	ret (1.41607)
	lin (0.728014)
	kid (0.518941)
	tra (0.492368)
	amn (0.417711)
	rec (0.346141)
	bfe (0.299715)
	mgp (0.230681)
	ton (0.1755)
	fbs (0.175346)
	mga (0.160205)
	tbr (0.154178)
	lun (0.150489)
	ova (0.129132)
	sug (0.127291)
	jej (0.0989218)