Ss1.1-Pig4-TMW8048A15.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTAGAAAAGGGACAGTCTCCAGCATCCAGAGAACATGTCCCTGTAACCCCACAGTGTACC CTTTCAGATCCAGATGCCCAAGGTCAAGCCCCAGAAAAAGTCATGAAGAAAGTGACTCTT GTCAAGGACTACAGCTTCGTTACTGAAGAGAATACATTTGAGGTGAAATTGCTTAAAAAT AGCTCAGGCCTAGGATTCAGTTTTTCTCGAGAAGATAATCTCATACCCGAGCAAATGAAT ACCAGCATAGTTAGGGTTAAAAAGCTCTTTCCTGGACAGCCAGCTGCAGAAAGTGGAAAA ATTGACGTGGGTGATGTTATCTTGAAAGTGAATGGCGCTCCTCTGAAAGGACTGTCTCAG CAGGAAGTCATATCCGCTCTCAGGGGAACATCTCCAGAAGTATCCTTGCTTCTCTGTAGA CCTCCTCCTGGTGTGCTACCGGAAATCGACCCTGCTCTTTTGACCCCACTGCACTCTCCA GCACAAGTACCTCCAAACAACAGTAAAGACCCTCCTCCACCGGCCTGCGTGGAGCAAGGC ACAAGCTCAGATGAAAATGAGATACCCGACAAAAGCCAGAACCCATGCACATCCCCAGCC CGGAGAGACAGTTACAGTGACAGCAGTGGGAGTGGAGAAGACGACTCAGTGAAAGCTCCG GCAAAGATACCAAACATGAGCTGGAGTTCAGCTTTGCATCAGACTTTAAGCAGCATGGTG TCACAGGCACAAGGTCAACGCAACACACTTAGGAGTCAAGAAGATACCATTTGTACCATG TTTTACTACCCTCAGAAGATACCTAGCAAACCCGAACTTGAGGACAGTAACCCACCTTCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTAGAAAAGGGACAGTCTCCAGCATCCAGAGAACATGTCCCTGTAACCCCACAGTGTACC CTTTCAGATCCAGATGCCCAAGGTCAAGCCCCAGAAAAAGTCATGAAGAAAGTGACTCTT GTCAAGGACTACAGCTTCGTTACTGAAGAGAATACATTTGAGGTGAAATTGCTTAAAAAT AGCTCAGGCCTAGGATTCAGTTTTTCTCGAGAAGATAATCTCATACCCGAGCAAATGAAT ACCAGCATAGTTAGGGTTAAAAAGCTCTTTCCTGGACAGCCAGCTGCAGAAAGTGGAAAA ATTGACGTGGGTGATGTTATCTTGAAAGTGAATGGCGCTCCTCTGAAAGGACTGTCTCAG CAGGAAGTCATATCCGCTCTCAGGGGAACATCTCCAGAAGTATCCTTGCTTCTCTGTAGA CCTCCTCCTGGTGTGCTACCGGAAATCGACCCTGCTCTTTTGACCCCACTGCACTCTCCA GCACAAGTACCTCCAAACAACAGTAAAGACCCTCCTCCACCGGCCTGCGTGGAGCAAGGC ACAAGCTCAGATGAAAATGAGATACCCGACAAAAGCCAGAACCCATGCACATCCCCAGCC CGGAGAGACAGTTACAGTGACAGCAGTGGGAGTGGAGAAGACGACTCAGTGAAAGCTCCG GCAAAGATACCAAACATGAGCTGGAGTTCAGCTTTGCATCAGACTTTAAGCAGCATGGTG TCACAGGCACAAGGTCAACGCAACACACTTAGGAGTCAAGAAGATACCATTTGTACCATG TTTTACTACCCTCAGAAGATACCTAGCAAACCCGAACTTGAGGACAGTAACCCACCTTCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 618-737, + strand, RNAz p=0.746893 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 618-737, + strand, RNAz p=0.746893 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 147-364, gnl|bosTau2|chr6 (58564344-58564127) | |
| 147-364, gnl|canFam2|chr32 (13249354-13249500) | |
| 147-364, gnl|danRer3|chrUn (110691731-110691585) | |
| 147-364, gnl|dasNov1|scaffold_43323 (14199-14053) | |
| 147-364, gnl|echTel1|scaffold_325047 (75416-75562) | |
| 147-364, gnl|fr1|chrUn (162254764-162254618) | |
| 147-364, gnl|galGal2|chr4 (46411811-46411665) | |
| 147-364, gnl|hg17|chr4 (88048097-88048243) | |
| 147-364, gnl|Hg17|chr4 (88048099-88048316) | |
| 147-364, gnl|loxAfr1|scaffold_128877 (191-45) | |
| 147-364, gnl|mm7|chr5 (102751233-102751379) | |
| 147-364, gnl|Mm7|chr5 (102751235-102751452) | |
| 147-364, gnl|monDom2|scaffold_37 (16289072-16288926) | |
| 147-364, gnl|oryCun1|scaffold_94392 (24461-24594) | |
| 147-364, gnl|panTro1|chr3_random (1212882-1212736) | |
| 147-364, gnl|rheMac2|chr5 (79721513-79721659) | |
| 147-364, gnl|rn3|chr14 (7335888-7335742) | |
| 147-364, gnl|tetNig1|chr4 (3640162-3640308) | |
| 147-364, gnl|xenTro1|scaffold_867 (146698-146552) | |
| 462-827, gnl|bosTau2|chr6 (58562583-58562218) | |
| 462-827, gnl|Hg17|chr4 (88049502-88049867) | |
| 462-827, gnl|Mm7|chr5 (102753315-102753644) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 147-364, gnl|bosTau2|chr6 (58564344-58564127) | |
| 147-364, gnl|canFam2|chr32 (13249354-13249500) | |
| 147-364, gnl|danRer3|chrUn (110691731-110691585) | |
| 147-364, gnl|dasNov1|scaffold_43323 (14199-14053) | |
| 147-364, gnl|echTel1|scaffold_325047 (75416-75562) | |
| 147-364, gnl|fr1|chrUn (162254764-162254618) | |
| 147-364, gnl|galGal2|chr4 (46411811-46411665) | |
| 147-364, gnl|hg17|chr4 (88048097-88048243) | |
| 147-364, gnl|Hg17|chr4 (88048099-88048316) | |
| 147-364, gnl|loxAfr1|scaffold_128877 (191-45) | |
| 147-364, gnl|mm7|chr5 (102751233-102751379) | |
| 147-364, gnl|Mm7|chr5 (102751235-102751452) | |
| 147-364, gnl|monDom2|scaffold_37 (16289072-16288926) | |
| 147-364, gnl|oryCun1|scaffold_94392 (24461-24594) | |
| 147-364, gnl|panTro1|chr3_random (1212882-1212736) | |
| 147-364, gnl|rheMac2|chr5 (79721513-79721659) | |
| 147-364, gnl|rn3|chr14 (7335888-7335742) | |
| 147-364, gnl|tetNig1|chr4 (3640162-3640308) | |
| 147-364, gnl|xenTro1|scaffold_867 (146698-146552) | |
| 462-827, gnl|bosTau2|chr6 (58562583-58562218) | |
| 462-827, gnl|Hg17|chr4 (88049502-88049867) | |
| 462-827, gnl|Mm7|chr5 (102753315-102753644) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cki (0.165235) | |
| ute (0.132784) | |
| clu (0.119646) |