Non-Coding RNA Search

Ss1.1-Pig4-TMW8048A19.5

Sequence:


               
               TCGCTGAGATGCTGGGCAGCTGTTAGTGACAGTAGTTGGCTCAAGTGTAAGAAGTATATG
GCCATATTGGAAGCAAGGTTTCCTTTCAGCCAGAGTCCGAGCCCCCACAGACCTGGGTCT
ACTCGGTATTTCAGCCGCTGCACATTCTCCAGGGCTGCCAGGAGGTTCGGAGCCTGAGAT
GAGGCGAGCCCTGGGTTCTGAACTCTTGGCTGTGTGCCAGAAGTAGGACCCTTTCCACTT
AGCACCTGAGTAGTTTTTTCATAAAGCAGGGGAATTTTTTTTTTTTTTTTCCCCACACTA
AATAGACAAAAATACAGCACCCTGCCTTGGCTTTGGGCCTGGGCCCCTAGGGTCTGGAAG
ACTGCTTCAGAGGGGACTGGAATCTTCCAGAGCTCTGCCCTCCCTCCTGGTGGGCTTCTT
TCCTCTCTAGGATTGTTCATTGTGGCTACTGCTCTGTTCCCCTGTGTGTCAGTGAAGAAA
ATACAAGGATGTTAAATTAACTCTCTTGGGAAAAGAACAAAACATGGATGAAAGAGTATT
GACAGTTTGACTAAAAACTTATCCTGAGAAGGATCTCCAGCACAGGAGTCATCCTTATCA
CCTCTACCCAGCGTGGTGCCACGTGATGACAGGTAACGGAGAAAAGAAGGCATTGGCTGT
CACTTGACAACTTGTCACCCACATGGGACACTTCCTATGCTCTGTCCTGGAGCCCAGGCA
GCTGGCACTGTGTTGACTTCTCCCCCAGCTGTGTGCAGGCCAGGCGGATTCGGGCCACCG
CCATGGCTCATGTAGTGTTTGCCCAGAGGAACATTTTATTTTTGAAAAGGGATGATGTGT
TTTTGTGCCAGGTGTTTATAATTTAATCCTTTAATAATATTATGTTCATTAACCTCTTAA
AAATGAGTGAATCCTTGATTGTTTTAACACCTCACCCAAGACACCACTGAGCTCTCCCTC
AGCTTCCAGCCTCTGGGACCAGAGGTCTGCGTCCCTGTAACTGCTGTCGGGTCCCTGAGC
TGGGCATGCGTTCTAACCAAGTAAAAGGACAGTCTTCTGAGACAGGGCAGTGGTCTCTGC
AGGAGGAACAGTGGCCTTGCTTCTCAACGGTCTTCACTGTGTGTTTTAAAACGACAACAA
CACAAAACTCTCTTGACCTGTAACTTAAAGATCATAAACTTCAGGCAATAATATTTTCTG
TGTAAGCTTTTAAAATTATTTTTGGGGATCATAGCTTGTTTTATTTTGTGCTATAAAATT
AACAGTATTAAATGACTTATATTCTTAGAATACATGGAGTGTCTTTCTTAACAGATCAGT
GCCTTTTTATTTTTGTATTCCATTTTACGTTATTGGTCCCAGCATCAGACCCTTGTTTCC
ATGGCCTGTTTGTACATTGTCTCAATAAAACTTGCATCAGCCGGTGGTAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGCTGAGATGCTGGGCAGCTGTTAGTGACAGTAGTTGGCTCAAGTGTAAGAAGTATATG
GCCATATTGGAAGCAAGGTTTCCTTTCAGCCAGAGTCCGAGCCCCCACAGACCTGGGTCT
ACTCGGTATTTCAGCCGCTGCACATTCTCCAGGGCTGCCAGGAGGTTCGGAGCCTGAGAT
GAGGCGAGCCCTGGGTTCTGAACTCTTGGCTGTGTGCCAGAAGTAGGACCCTTTCCACTT
AGCACCTGAGTAGTTTTTTCATAAAGCAGGGGAATTTTTTTTTTTTTTTTCCCCACACTA
AATAGACAAAAATACAGCACCCTGCCTTGGCTTTGGGCCTGGGCCCCTAGGGTCTGGAAG
ACTGCTTCAGAGGGGACTGGAATCTTCCAGAGCTCTGCCCTCCCTCCTGGTGGGCTTCTT
TCCTCTCTAGGATTGTTCATTGTGGCTACTGCTCTGTTCCCCTGTGTGTCAGTGAAGAAA
ATACAAGGATGTTAAATTAACTCTCTTGGGAAAAGAACAAAACATGGATGAAAGAGTATT
GACAGTTTGACTAAAAACTTATCCTGAGAAGGATCTCCAGCACAGGAGTCATCCTTATCA
CCTCTACCCAGCGTGGTGCCACGTGATGACAGGTAACGGAGAAAAGAAGGCATTGGCTGT
CACTTGACAACTTGTCACCCACATGGGACACTTCCTATGCTCTGTCCTGGAGCCCAGGCA
GCTGGCACTGTGTTGACTTCTCCCCCAGCTGTGTGCAGGCCAGGCGGATTCGGGCCACCG
CCATGGCTCATGTAGTGTTTGCCCAGAGGAACATTTTATTTTTGAAAAGGGATGATGTGT
TTTTGTGCCAGGTGTTTATAATTTAATCCTTTAATAATATTATGTTCATTAACCTCTTAA
AAATGAGTGAATCCTTGATTGTTTTAACACCTCACCCAAGACACCACTGAGCTCTCCCTC
AGCTTCCAGCCTCTGGGACCAGAGGTCTGCGTCCCTGTAACTGCTGTCGGGTCCCTGAGC
TGGGCATGCGTTCTAACCAAGTAAAAGGACAGTCTTCTGAGACAGGGCAGTGGTCTCTGC
AGGAGGAACAGTGGCCTTGCTTCTCAACGGTCTTCACTGTGTGTTTTAAAACGACAACAA
CACAAAACTCTCTTGACCTGTAACTTAAAGATCATAAACTTCAGGCAATAATATTTTCTG
TGTAAGCTTTTAAAATTATTTTTGGGGATCATAGCTTGTTTTATTTTGTGCTATAAAATT
AACAGTATTAAATGACTTATATTCTTAGAATACATGGAGTGTCTTTCTTAACAGATCAGT
GCCTTTTTATTTTTGTATTCCATTTTACGTTATTGGTCCCAGCATCAGACCCTTGTTTCC
ATGGCCTGTTTGTACATTGTCTCAATAAAACTTGCATCAGCCGGTGGTAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1059-1428, gnl|bosTau2|chr17 (45193123-45192755)
               

               
               1059-1428, gnl|Hg17|chr22 (19632195-19632582)
               

               
               1059-1428, gnl|Mm7|chr16 (17036815-17037159)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1059-1428, gnl|bosTau2|chr17 (45193123-45192755)
               

               
               1059-1428, gnl|Hg17|chr22 (19632195-19632582)
               

               
               1059-1428, gnl|Mm7|chr16 (17036815-17037159)

Expressed library(ies): 21 entry(ies)

More info

Expressed library(ies): 21 entry(ies)

Help | Less info


               
               pro (0.512033)
               

               
               cje (0.495704)
               

               
               sme (0.305437)
               

               
               eep (0.245128)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ldo (0.0970026)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               cje (0.495704)
               

               
               sme (0.305437)
               

               
               eep (0.245128)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ldo (0.0970026)

	1059-1428, gnl\|bosTau2\|chr17 (45193123-45192755)
	1059-1428, gnl\|Hg17\|chr22 (19632195-19632582)
	1059-1428, gnl\|Mm7\|chr16 (17036815-17037159)

	pro (0.512033)
	cje (0.495704)
	sme (0.305437)
	eep (0.245128)
	sto (0.179824)
	fty (0.17584)
	fbs (0.175346)
	rec (0.17307)
	cki (0.165235)
	fco (0.157208)
	lun (0.150489)
	lin (0.145603)
	pty (0.142714)
	ste (0.135208)
	lyg (0.133103)
	ute (0.132784)
	ova (0.129132)
	pgl (0.118483)
	ebs (0.118301)
	med (0.116252)
	ldo (0.0970026)