Ss1.1-Pig4-TMW8048A22.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AACGCTCCGTGAAGATTAATCCCATGCAGCTCGGGGTGTGGTTTTCTCTGGGCTGTGCCT ATCTGGCTTTGGAAGACTACAGCGGTTCAGCCAGGGCATTTCAGCGCTGTGTGACCCTAG AACCTGATAATGCTGAAGCGTGGAACAATTTATCAACTTCTTATATCCGATTAAAACAAA AAGTAAAAGCTTTTAGAACTTTACAAGAAGCCCTCAAGTGCAACTATGAACATTGGCAGA TCTGGGAAAACTACATTCTCACTAGCACCGATGTTGGGGAATTTTCAGAAGCCATTAAAG CTTATCATCGGCTCTTGGACTTACGAGACAAATATAAAGATACTCAGGTCCTTAAAATTC TGGTCAGGGCAGTGATGGATGGAATGGCTGATCGTAGTGGAGATATTGCAACTGGCCTCA GAGGAAAGCTGCAGGAGTTATTTGGCCGAGTAACTTCAAGAGTGACGAATGATGGAGAAA TCTGGAGGCTGTATGCCCAAGTGTATGGAAATGGGCAGAGTGACAAGCCTGATGAGAACG AAAAGGCATTCCAGTATCTCTCGAAGGCATATAAGTGTGACACACAGTCCAGTTGTTGGG AGAAAGACATTACGTCATTTAAGGACGTGGTTCAGAGAGCCTTAGCACTTGCACATGTGG CTATAAAATGCAGTAAAAATAAATCCAGTCCGCAGGAGGCCGTACAGGTGCTTTCTTCAG TTCGACTCAATTTGCGGGGCCTGTTATCTAAAGCAAAGCAACTTTTTACAGATGTGGCAA CTGGAGAAATTTCCACGGAGTTAGTTAGTGAAACAGCAGCTATGGACGCCTTAGTAACAG AGCTTCAAGACCTAAGCAACCAATTTCGAAATCAGTATTGACCACCCTGGGAACAGTTTC TGAAGAAGGTGTTTCCCCTTCTGGAATTTCTCTCATAACATGTGTATCTGAAATTCAAAA TACTCATTTTTTTAATAAATTTTTCTTGTATGGCTAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AACGCTCCGTGAAGATTAATCCCATGCAGCTCGGGGTGTGGTTTTCTCTGGGCTGTGCCT ATCTGGCTTTGGAAGACTACAGCGGTTCAGCCAGGGCATTTCAGCGCTGTGTGACCCTAG AACCTGATAATGCTGAAGCGTGGAACAATTTATCAACTTCTTATATCCGATTAAAACAAA AAGTAAAAGCTTTTAGAACTTTACAAGAAGCCCTCAAGTGCAACTATGAACATTGGCAGA TCTGGGAAAACTACATTCTCACTAGCACCGATGTTGGGGAATTTTCAGAAGCCATTAAAG CTTATCATCGGCTCTTGGACTTACGAGACAAATATAAAGATACTCAGGTCCTTAAAATTC TGGTCAGGGCAGTGATGGATGGAATGGCTGATCGTAGTGGAGATATTGCAACTGGCCTCA GAGGAAAGCTGCAGGAGTTATTTGGCCGAGTAACTTCAAGAGTGACGAATGATGGAGAAA TCTGGAGGCTGTATGCCCAAGTGTATGGAAATGGGCAGAGTGACAAGCCTGATGAGAACG AAAAGGCATTCCAGTATCTCTCGAAGGCATATAAGTGTGACACACAGTCCAGTTGTTGGG AGAAAGACATTACGTCATTTAAGGACGTGGTTCAGAGAGCCTTAGCACTTGCACATGTGG CTATAAAATGCAGTAAAAATAAATCCAGTCCGCAGGAGGCCGTACAGGTGCTTTCTTCAG TTCGACTCAATTTGCGGGGCCTGTTATCTAAAGCAAAGCAACTTTTTACAGATGTGGCAA CTGGAGAAATTTCCACGGAGTTAGTTAGTGAAACAGCAGCTATGGACGCCTTAGTAACAG AGCTTCAAGACCTAAGCAACCAATTTCGAAATCAGTATTGACCACCCTGGGAACAGTTTC TGAAGAAGGTGTTTCCCCTTCTGGAATTTCTCTCATAACATGTGTATCTGAAATTCAAAA TACTCATTTTTTTAATAAATTTTTCTTGTATGGCTAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 346-546, + strand, RNAz p=0.802045 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 346-546, + strand, RNAz p=0.802045 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 25-127, gnl|bosTau2|chr24 (43779253-43779151) | |
| 25-127, gnl|canFam2|chr17 (29104426-29104550) | |
| 25-127, gnl|danRer3|chr17 (16416496-16416365) | |
| 25-127, gnl|dasNov1|scaffold_35886 (756-631) | |
| 25-127, gnl|echTel1|scaffold_309964 (41276-41400) | |
| 25-127, gnl|galGal2|chr3 (27684438-27684316) | |
| 25-127, gnl|hg17|chr2 (32914581-32914705) | |
| 25-127, gnl|Hg17|chr2 (32914595-32914697) | |
| 25-127, gnl|loxAfr1|scaffold_10664 (59492-59368) | |
| 25-127, gnl|mm7|chr17 (73119461-73119585) | |
| 25-127, gnl|Mm7|chr17 (73119475-73119577) | |
| 25-127, gnl|oryCun1|scaffold_191150 (4730-4855) | |
| 25-127, gnl|panTro1|chr12 (33941791-33941915) | |
| 25-127, gnl|rheMac2|chr13 (32784079-32784204) | |
| 25-127, gnl|rn3|chr6 (20526768-20526644) | |
| 25-127, gnl|tetNig1|chrUn_random (50051630-50051522) | |
| 346-546, gnl|bosTau2|chr24 (43750497-43750297) | |
| 346-546, gnl|canFam2|chr17 (29127057-29127276) | |
| 346-546, gnl|danRer3|chr17 (17452238-17452017) | |
| 346-546, gnl|dasNov1|scaffold_13375 (18812-18593) | |
| 346-546, gnl|echTel1|scaffold_309964 (65563-65782) | |
| 346-546, gnl|galGal2|chr3 (27673724-27673504) | |
| 346-546, gnl|hg17|chr2 (32947727-32947946) | |
| 346-546, gnl|Hg17|chr2 (32947740-32947940) | |
| 346-546, gnl|loxAfr1|scaffold_86326 (8087-8306) | |
| 346-546, gnl|mm7|chr17 (73146381-73146601) | |
| 346-546, gnl|Mm7|chr17 (73146395-73146595) | |
| 346-546, gnl|monDom2|scaffold_1 (141190000-141189780) | |
| 346-546, gnl|oryCun1|scaffold_192202 (5208-5428) | |
| 346-546, gnl|panTro1|chr12 (33974792-33975011) | |
| 346-546, gnl|rheMac2|chr13 (32814014-32814233) | |
| 346-546, gnl|rn3|chr6 (20498814-20498594) | |
| 346-546, gnl|xenTro1|scaffold_243 (1321893-1322113) | |
| 757-997, gnl|bosTau2|chr24 (43740466-43740226) | |
| 757-997, gnl|Hg17|chr2 (32957532-32957769) | |
| 757-997, gnl|Mm7|chr17 (73153320-73153554) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 25-127, gnl|bosTau2|chr24 (43779253-43779151) | |
| 25-127, gnl|canFam2|chr17 (29104426-29104550) | |
| 25-127, gnl|danRer3|chr17 (16416496-16416365) | |
| 25-127, gnl|dasNov1|scaffold_35886 (756-631) | |
| 25-127, gnl|echTel1|scaffold_309964 (41276-41400) | |
| 25-127, gnl|galGal2|chr3 (27684438-27684316) | |
| 25-127, gnl|hg17|chr2 (32914581-32914705) | |
| 25-127, gnl|Hg17|chr2 (32914595-32914697) | |
| 25-127, gnl|loxAfr1|scaffold_10664 (59492-59368) | |
| 25-127, gnl|mm7|chr17 (73119461-73119585) | |
| 25-127, gnl|Mm7|chr17 (73119475-73119577) | |
| 25-127, gnl|oryCun1|scaffold_191150 (4730-4855) | |
| 25-127, gnl|panTro1|chr12 (33941791-33941915) | |
| 25-127, gnl|rheMac2|chr13 (32784079-32784204) | |
| 25-127, gnl|rn3|chr6 (20526768-20526644) | |
| 25-127, gnl|tetNig1|chrUn_random (50051630-50051522) | |
| 346-546, gnl|bosTau2|chr24 (43750497-43750297) | |
| 346-546, gnl|canFam2|chr17 (29127057-29127276) | |
| 346-546, gnl|danRer3|chr17 (17452238-17452017) | |
| 346-546, gnl|dasNov1|scaffold_13375 (18812-18593) | |
| 346-546, gnl|echTel1|scaffold_309964 (65563-65782) | |
| 346-546, gnl|galGal2|chr3 (27673724-27673504) | |
| 346-546, gnl|hg17|chr2 (32947727-32947946) | |
| 346-546, gnl|Hg17|chr2 (32947740-32947940) | |
| 346-546, gnl|loxAfr1|scaffold_86326 (8087-8306) | |
| 346-546, gnl|mm7|chr17 (73146381-73146601) | |
| 346-546, gnl|Mm7|chr17 (73146395-73146595) | |
| 346-546, gnl|monDom2|scaffold_1 (141190000-141189780) | |
| 346-546, gnl|oryCun1|scaffold_192202 (5208-5428) | |
| 346-546, gnl|panTro1|chr12 (33974792-33975011) | |
| 346-546, gnl|rheMac2|chr13 (32814014-32814233) | |
| 346-546, gnl|rn3|chr6 (20498814-20498594) | |
| 346-546, gnl|xenTro1|scaffold_243 (1321893-1322113) | |
| 757-997, gnl|bosTau2|chr24 (43740466-43740226) | |
| 757-997, gnl|Hg17|chr2 (32957532-32957769) | |
| 757-997, gnl|Mm7|chr17 (73153320-73153554) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| cut (0.339847) | |
| sme (0.305437) | |
| clu (0.239292) | |
| tes (0.207814) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| lin (0.145603) | |
| csk (0.140746) | |
| pla (0.133672) | |
| thg (0.126791) | |
| bla (0.124347) | |
| eje (0.0988338) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cut (0.339847) | |
| sme (0.305437) | |
| clu (0.239292) | |
| tes (0.207814) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| lin (0.145603) | |
| csk (0.140746) | |
| pla (0.133672) | |
| thg (0.126791) | |
| bla (0.124347) | |
| eje (0.0988338) |