Ss1.1-Pig4-TMW8048B08.5
|
CTCCCCGCCCGCTGCGGGCCTCTCCGGCCGGTGGTTTGCCCGGGCGCCTCAGTGCGCTCG
GCCAACGGCCTCTGAGAGCGCCCACCCGAGCGCCCTGGGAGCCGGCGGGCGGCGGCCCAC
GCCGGGGACCCTCCAGCGGGCCCAGGGGGACAGAAGTGGCTCTAAATCCAGCACATGCTT
ATTGAAGCAAGTTAAAGGATTTACTATGAAGCATAGAAGCAGATAATGCCAAATAGCAAG
CAGTAGTTGGTACACATTTAGTGAGTGGGGCAGCGTTTCCTTCTCCCACTGCTGCAGAGA
TGGCGGAAATTAGTCGAATTCAGTATGAAATGGAATACACTGAAGGTATTAGTCAGCGAA
TGAGGGTCCCGGAGAAATTAAAGGTAGCACCACCAAATGCTGACATGGAACAAGGATTCC
AAGAAGGAGTTTCAAATGCTAGTGTGATCATGCAGGTTCCAGAGAGAATTGTCGTAGCAG
GAAATAATGAAGACATTCCATTTTCAAGACCAGCAGATCTTGACCTTATACAGTCAACTC
CCTTTAAACCTCTGGCACTAAAAACACCACCTCGTGTGCTTACGCTAAGTGAAAGACCAC
TAGATTTTCTGGATTTAGAAAGACCTCCTCCAACCCCTCAAAATGAAGAAATCCGTTCCG
TTGGCAGGCTAAAAAGAGAGCGCTCTATGAGTGAAAATGCTGTTCGCCAGAACGGACAGC
TAGTCAGAACTGACGTCAGGTATGGCATTTCAAATATAGATACAACTGTTGAAGGAACTT
CAGATGACATGACTGTTGTAGATGCAGCTTCGTTAAGACGACAGATAATCAAACTAAACA
GACGTCTACAACTTCTGGAAGAGGAGAACAAAGAACGCGCTAAAAGAGAAATGGTCATGT
ATTCAATCACCGTAGCATTCTGGCTGCTTAATAGCTGGCTCTGGTTTCGCCGCTAGAGGT
AACCTCGGCTCTCAAAAATAGTGTTTCAACAGCTGGACATATAAAGAATTTGCAAACGTC
TTTGTTTCTGTCTGCATTGTATGCCGTTTTACAGTCCATGCCCTAAAAATGTGTTTCTTC
CAGAAAGGAGGGGGGAAGGACTTATATTTGCAGAAGTAAAGGTATATTCTGTCACTCAGC
TGTATTGGCTTTTAACAAATTCTGCCATAACACCTACTTAAAATTCCCCTTTTGCATGTT
TTATAAATAGGCTCTAGTTTTTTGGTTTGGGTTGTTTTTTTTTTTTAAGGAATTTTTTTG
CCTCATCAGTCTGACCAACTAATTCTCTGAATGAGGGAGTGTATAGAGAGTGAATTTAGA
AGTGTGTCTGTAAGGGGGAAATAATACCTTATTTTGTCCTGTTGCTCAAACACCGTTGGA
CTAAACCGTTCAGTTAATAGATATTTTTGCATCCACATTTCAACATGAACACTTCTGAAG
TCATAGTCTGGTGTCAGAATTAATAAAATCAAGTTACCTCATGTTTCATGATCACTTTCA
ATAAAGTAATTCCTAACATTTTCAGCAGTTTACCTAATATGTGTATAAAATGCACGTTTT
CATTTTTATTTCAGTTTTGCAGATGGTTTTCTTTAAAGTACGTTTTTACCAAGTCCATGT
GTGAACGATTTAAAAAAACCACAGAAGAAGGTACAAATGTAGTGTATTTACTTAATAAAG
TGCCGACCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CTCCCCGCCCGCTGCGGGCCTCTCCGGCCGGTGGTTTGCCCGGGCGCCTCAGTGCGCTCG
GCCAACGGCCTCTGAGAGCGCCCACCCGAGCGCCCTGGGAGCCGGCGGGCGGCGGCCCAC
GCCGGGGACCCTCCAGCGGGCCCAGGGGGACAGAAGTGGCTCTAAATCCAGCACATGCTT
ATTGAAGCAAGTTAAAGGATTTACTATGAAGCATAGAAGCAGATAATGCCAAATAGCAAG
CAGTAGTTGGTACACATTTAGTGAGTGGGGCAGCGTTTCCTTCTCCCACTGCTGCAGAGA
TGGCGGAAATTAGTCGAATTCAGTATGAAATGGAATACACTGAAGGTATTAGTCAGCGAA
TGAGGGTCCCGGAGAAATTAAAGGTAGCACCACCAAATGCTGACATGGAACAAGGATTCC
AAGAAGGAGTTTCAAATGCTAGTGTGATCATGCAGGTTCCAGAGAGAATTGTCGTAGCAG
GAAATAATGAAGACATTCCATTTTCAAGACCAGCAGATCTTGACCTTATACAGTCAACTC
CCTTTAAACCTCTGGCACTAAAAACACCACCTCGTGTGCTTACGCTAAGTGAAAGACCAC
TAGATTTTCTGGATTTAGAAAGACCTCCTCCAACCCCTCAAAATGAAGAAATCCGTTCCG
TTGGCAGGCTAAAAAGAGAGCGCTCTATGAGTGAAAATGCTGTTCGCCAGAACGGACAGC
TAGTCAGAACTGACGTCAGGTATGGCATTTCAAATATAGATACAACTGTTGAAGGAACTT
CAGATGACATGACTGTTGTAGATGCAGCTTCGTTAAGACGACAGATAATCAAACTAAACA
GACGTCTACAACTTCTGGAAGAGGAGAACAAAGAACGCGCTAAAAGAGAAATGGTCATGT
ATTCAATCACCGTAGCATTCTGGCTGCTTAATAGCTGGCTCTGGTTTCGCCGCTAGAGGT
AACCTCGGCTCTCAAAAATAGTGTTTCAACAGCTGGACATATAAAGAATTTGCAAACGTC
TTTGTTTCTGTCTGCATTGTATGCCGTTTTACAGTCCATGCCCTAAAAATGTGTTTCTTC
CAGAAAGGAGGGGGGAAGGACTTATATTTGCAGAAGTAAAGGTATATTCTGTCACTCAGC
TGTATTGGCTTTTAACAAATTCTGCCATAACACCTACTTAAAATTCCCCTTTTGCATGTT
TTATAAATAGGCTCTAGTTTTTTGGTTTGGGTTGTTTTTTTTTTTTAAGGAATTTTTTTG
CCTCATCAGTCTGACCAACTAATTCTCTGAATGAGGGAGTGTATAGAGAGTGAATTTAGA
AGTGTGTCTGTAAGGGGGAAATAATACCTTATTTTGTCCTGTTGCTCAAACACCGTTGGA
CTAAACCGTTCAGTTAATAGATATTTTTGCATCCACATTTCAACATGAACACTTCTGAAG
TCATAGTCTGGTGTCAGAATTAATAAAATCAAGTTACCTCATGTTTCATGATCACTTTCA
ATAAAGTAATTCCTAACATTTTCAGCAGTTTACCTAATATGTGTATAAAATGCACGTTTT
CATTTTTATTTCAGTTTTGCAGATGGTTTTCTTTAAAGTACGTTTTTACCAAGTCCATGT
GTGAACGATTTAAAAAAACCACAGAAGAAGGTACAAATGTAGTGTATTTACTTAATAAAG
TGCCGACCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
|
gi|9295337|gb|AAF86949.1| |
Protein identifier
|
gi|9295337|gb|AAF86949.1| |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
cte (2.04918) |
|
tes (0.831255) |
|
mgp (0.692042) |
|
tbr (0.616713) |
|
fcc (0.593354) |
|
nco (0.485201) |
|
fco (0.471624) |
|
liv (0.438853) |
|
lin (0.436808) |
|
ova (0.387397) |
|
ret (0.3862) |
|
ecc (0.345105) |
|
vin (0.332557) |
|
kid (0.259471) |
|
ebs (0.236602) |
|
spc (0.226732) |
|
mas (0.210305) |
|
nbm (0.198649) |
|
aor (0.195274) |
|
ill (0.175593) |
|
fbs (0.175346) |
|
rec (0.17307) |
|
cut (0.169924) |
|
fhi (0.169578) |
|
lun (0.150489) |
|
bfe (0.149858) |
|
fat (0.147427) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
csk (0.140746) |
|
pla (0.133672) |
|
lyg (0.133103) |
|
ute (0.132784) |
|
sug (0.127291) |
|
clu (0.119646) |
|
med (0.116252) |
|
cbl (0.114797) |
|
jej (0.0989218) |
|
ldo (0.0970026) |
|
cte (2.04918) |
|
tes (0.831255) |
|
mgp (0.692042) |
|
tbr (0.616713) |
|
fcc (0.593354) |
|
nco (0.485201) |
|
fco (0.471624) |
|
liv (0.438853) |
|
lin (0.436808) |
|
ova (0.387397) |
|
ret (0.3862) |
|
ecc (0.345105) |
|
vin (0.332557) |
|
kid (0.259471) |
|
ebs (0.236602) |
|
spc (0.226732) |
|
mas (0.210305) |
|
nbm (0.198649) |
|
aor (0.195274) |
|
ill (0.175593) |
|
fbs (0.175346) |
|
rec (0.17307) |
|
cut (0.169924) |
|
fhi (0.169578) |
|
lun (0.150489) |
|
bfe (0.149858) |
|
fat (0.147427) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
csk (0.140746) |
|
pla (0.133672) |
|
lyg (0.133103) |
|
ute (0.132784) |
|
sug (0.127291) |
|
clu (0.119646) |
|
med (0.116252) |
|
cbl (0.114797) |
|
jej (0.0989218) |
|
ldo (0.0970026) |