Ss1.1-Pig4-TMW8048B15.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCACTGAGCAAGGGCAGGGACCGAACCCGCAACCTCATGGTTCCTAGTCGGATTCGTTAA CCACTGCGCCACGACGGGAACTCCCCTTAAGTTTTAAAAATATCAGTATTTTTAATTTTT CCACTTCCAAGGCTTTTCCGTCTTGGGATCAGTATATAGTTCTGGATGCCATCTACCATG AAAAACAGCCTTTAGCTTTGGATAAATAATGACATTTGGCCTACATTTGAGTCTACTGAC CACCCTAGGTTAGGAAACCTAGAACTACCCTGAAACTGATCCAGTTTGAAGAAGGCCATG TTACTAACTGAAATTGAATTTGTCACTGCGTGTTGGAAAGAATAGGAGGGGCTGTTAGGT GGACTGGGCAGGGCAGTCACTTGTTTGTGGAGGGGAGGATAGTTAATTTTTAAACTTTTA TTTATTTTGATCCCTATCAGTTGGTTTCAGCCAAGATCTGATAAAGAATTTTATTGCTAC TATATTTCAGTTACAAAAGGTATATAAATAATTTTCTTGCTCATATACTTTATTTACTTT TATTTCCTTTCCTTGAATTATTAAAATATGCTTTATAGGACTAACTTGTTTTTCTTTTTC ATTTCCATACAGGAAGGAGACAATTATTGTTCATGTACCATTTTTAACTAGTCTTTTGAG GATTAATTGTGAAACGTTTTATGGTTTGCTAGATTCCTAATTTAAAATGCCTGTAATCTT TTATAGGAATTTCAACTTTTGCACTTTGGTAATAACAAATCTAGGTAAGTAAAAAGTGAG GATCTCATACAATTCTGAAGATCTAAGCTTGGTTTAGAATTTAATATTTTATAACTAGTA AGCCTTTTGATTTAGTTAAAGATAATAATGTAACTGCCCATACTTGAGTGATGAGTGGGT ATGTAAATCAGTATTTCTGATGTTTCTTTGGTAGTTGCTGCTGGAGTTAGAAGTTAGGAA CAAATCTGATGGCCTTTGTAAATCCCTTTTGTCATTTCCCAGAGGAGTGAAGGCTTTCCT GAAGTCTCCTCAACAAGATGCCTAGCATAACATTGTAATCAGTGAGGATTATGGTATAGA GAAGGAAGATTAACTGAATTATATATTAATTATCATAATCTTATTTAAGATTCTCTGAGG AATTCCCAGACTAAAAATCTATGTACTTGAGCTTTCAGCAACAGCCTTTTCACTTCCTTT GATGACTTTTTGGTAGCACTTACAACATTTATGATTGCCTAAATAATATTCTCCGAGTTA GCAGGTAAAAATTCCACCGTGAGCTTCCTCCTCATCCTCGCATGGTGCTGGGTATTGTGA ACATTGGATCGTAAAAGGCTTGTAATTTTTTTGACTCACTGACAGCAAGAAATGTATTTT ACGTCACATATATTTTATTATACATAGGTATGTGTGCAGTGAAAGGAATAAGTTTCACAA TAAAGTGATACA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCACTGAGCAAGGGCAGGGACCGAACCCGCAACCTCATGGTTCCTAGTCGGATTCGTTAA CCACTGCGCCACGACGGGAACTCCCCTTAAGTTTTAAAAATATCAGTATTTTTAATTTTT CCACTTCCAAGGCTTTTCCGTCTTGGGATCAGTATATAGTTCTGGATGCCATCTACCATG AAAAACAGCCTTTAGCTTTGGATAAATAATGACATTTGGCCTACATTTGAGTCTACTGAC CACCCTAGGTTAGGAAACCTAGAACTACCCTGAAACTGATCCAGTTTGAAGAAGGCCATG TTACTAACTGAAATTGAATTTGTCACTGCGTGTTGGAAAGAATAGGAGGGGCTGTTAGGT GGACTGGGCAGGGCAGTCACTTGTTTGTGGAGGGGAGGATAGTTAATTTTTAAACTTTTA TTTATTTTGATCCCTATCAGTTGGTTTCAGCCAAGATCTGATAAAGAATTTTATTGCTAC TATATTTCAGTTACAAAAGGTATATAAATAATTTTCTTGCTCATATACTTTATTTACTTT TATTTCCTTTCCTTGAATTATTAAAATATGCTTTATAGGACTAACTTGTTTTTCTTTTTC ATTTCCATACAGGAAGGAGACAATTATTGTTCATGTACCATTTTTAACTAGTCTTTTGAG GATTAATTGTGAAACGTTTTATGGTTTGCTAGATTCCTAATTTAAAATGCCTGTAATCTT TTATAGGAATTTCAACTTTTGCACTTTGGTAATAACAAATCTAGGTAAGTAAAAAGTGAG GATCTCATACAATTCTGAAGATCTAAGCTTGGTTTAGAATTTAATATTTTATAACTAGTA AGCCTTTTGATTTAGTTAAAGATAATAATGTAACTGCCCATACTTGAGTGATGAGTGGGT ATGTAAATCAGTATTTCTGATGTTTCTTTGGTAGTTGCTGCTGGAGTTAGAAGTTAGGAA CAAATCTGATGGCCTTTGTAAATCCCTTTTGTCATTTCCCAGAGGAGTGAAGGCTTTCCT GAAGTCTCCTCAACAAGATGCCTAGCATAACATTGTAATCAGTGAGGATTATGGTATAGA GAAGGAAGATTAACTGAATTATATATTAATTATCATAATCTTATTTAAGATTCTCTGAGG AATTCCCAGACTAAAAATCTATGTACTTGAGCTTTCAGCAACAGCCTTTTCACTTCCTTT GATGACTTTTTGGTAGCACTTACAACATTTATGATTGCCTAAATAATATTCTCCGAGTTA GCAGGTAAAAATTCCACCGTGAGCTTCCTCCTCATCCTCGCATGGTGCTGGGTATTGTGA ACATTGGATCGTAAAAGGCTTGTAATTTTTTTGACTCACTGACAGCAAGAAATGTATTTT ACGTCACATATATTTTATTATACATAGGTATGTGTGCAGTGAAAGGAATAAGTTTCACAA TAAAGTGATACA |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 87-241, gnl|bosTau2|chr3 (29682724-29682881) | |
| 87-241, gnl|canFam2|chr6 (44682847-44682735) | |
| 87-241, gnl|dasNov1|scaffold_18304 (3383-3256) | |
| 87-241, gnl|echTel1|scaffold_257823 (10965-11149) | |
| 87-241, gnl|hg17|chr1 (110626222-110626330) | |
| 87-241, gnl|Hg17|chr1 (110626237-110626430) | |
| 87-241, gnl|mm7|chr3 (107125207-107125097) | |
| 87-241, gnl|Mm7|chr3 (107125187-107125021) | |
| 87-241, gnl|panTro1|chr1 (111655307-111655199) | |
| 87-241, gnl|rheMac2|chr1 (113437935-113438043) | |
| 87-241, gnl|rn3|chr2 (202745201-202745102) | |
| 276-488, gnl|bosTau2|chr3 (29682876-29683094) | |
| 276-488, gnl|canFam2|chr6 (44682708-44682339) | |
| 276-488, gnl|echTel1|scaffold_257823 (11175-11589) | |
| 276-488, gnl|hg17|chr1 (110626356-110626776) | |
| 276-488, gnl|Hg17|chr1 (110626425-110626625) | |
| 276-488, gnl|mm7|chr3 (107125073-107124677) | |
| 276-488, gnl|Mm7|chr3 (107125030-107124833) | |
| 276-488, gnl|oryCun1|scaffold_209241 (51822-51537) | |
| 276-488, gnl|panTro1|chr1 (111655173-111654744) | |
| 276-488, gnl|rheMac2|chr1 (113438069-113438499) | |
| 276-488, gnl|rn3|chr2 (202745079-202744688) | |
| 546-1409, gnl|bosTau2|chr3 (29683224-29684106) | |
| 546-1409, gnl|Hg17|chr1 (110626737-110627614) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 87-241, gnl|bosTau2|chr3 (29682724-29682881) | |
| 87-241, gnl|canFam2|chr6 (44682847-44682735) | |
| 87-241, gnl|dasNov1|scaffold_18304 (3383-3256) | |
| 87-241, gnl|echTel1|scaffold_257823 (10965-11149) | |
| 87-241, gnl|hg17|chr1 (110626222-110626330) | |
| 87-241, gnl|Hg17|chr1 (110626237-110626430) | |
| 87-241, gnl|mm7|chr3 (107125207-107125097) | |
| 87-241, gnl|Mm7|chr3 (107125187-107125021) | |
| 87-241, gnl|panTro1|chr1 (111655307-111655199) | |
| 87-241, gnl|rheMac2|chr1 (113437935-113438043) | |
| 87-241, gnl|rn3|chr2 (202745201-202745102) | |
| 276-488, gnl|bosTau2|chr3 (29682876-29683094) | |
| 276-488, gnl|canFam2|chr6 (44682708-44682339) | |
| 276-488, gnl|echTel1|scaffold_257823 (11175-11589) | |
| 276-488, gnl|hg17|chr1 (110626356-110626776) | |
| 276-488, gnl|Hg17|chr1 (110626425-110626625) | |
| 276-488, gnl|mm7|chr3 (107125073-107124677) | |
| 276-488, gnl|Mm7|chr3 (107125030-107124833) | |
| 276-488, gnl|oryCun1|scaffold_209241 (51822-51537) | |
| 276-488, gnl|panTro1|chr1 (111655173-111654744) | |
| 276-488, gnl|rheMac2|chr1 (113438069-113438499) | |
| 276-488, gnl|rn3|chr2 (202745079-202744688) | |
| 546-1409, gnl|bosTau2|chr3 (29683224-29684106) | |
| 546-1409, gnl|Hg17|chr1 (110626737-110627614) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| liv (0.438853) | |
| hea (0.204499) | |
| sin (0.174948) | |
| ecc (0.115035) | |
| eje (0.0988338) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| liv (0.438853) | |
| hea (0.204499) | |
| sin (0.174948) | |
| ecc (0.115035) | |
| eje (0.0988338) |