Non-Coding RNA Search

Ss1.1-Pig4-TMW8048B19.3

Sequence:


               
               GGATGCAATGCCTCTGATTGGGCCTGAAACCTTGGTTTGCCATGAAGTAGATTTGGATGA
TTTGGATGAAAAAGATAAGACCAGCATTGAGGACGTAGCAGTGGAAAGCTCTGAGTCTAA
CTCTCTTGTTTCTGTTCCGCCTGCCCTACCTCCTGTAGTACAGCATAACTTCTCAGTAGC
TTCACCACTTACTCTCAGCCAAGATGAGTCTCGAAGTATAAAAAGTGAGAGTGACGTAAC
CATTGAAGTTGATAGTATTGCTGAAGAATCTCAAGAAGGTCTCTGTGAGAGGGAATCAGC
CAATGGATTTGAAACCAGTGTTGCCTCTGGTACCTGTAGTATAATTGTTCAAGAAAGAGA
GAGCAGGGAGAAGGGTCAGAAAAGACCAAGCGATGGAACTAGTGGATTGCTGGCAAAAAA
GCAGAAGCGAACCCCAAAGCGAACAAATGCTGTAGCCAAAAATGAAAAGAATGGAGCAGG
ACAAAGCAGTGATAGTGAAGATCTTCCTGCCCTAGACAATTCAAGTAAATGTACTCCAGT
AAAGCATCTTAGTGTATCAAAGCCACAGAAGCTTGTACGGTCTCCTGCAAGAATATCCCC
TCACATTAAAGATGGAGAAAAAGATAAACAGAAGGAAAAACATCCGAATTCATCCCCTCG
GACATATAAGTGGAGCTTTCAACTCAATGAATTAGATAATATGAACAGTACAGAGAGAAT
CTCTTTTCTCCAAGAAAAACTACAGGAAATCAGAAAATATTACATGTCTTTGAAGTCTGA
AGTTGCAACCATAGATAGGAGGAGAAAAAGATTAAAAAAGAAAGACAGAGAAGTGTCTCA
TGCAGGAGCCTCCATGTCATCTGCTTCCTCAGACACTGGAATGAGTCCCTCCTCCTCATC
GCCCCCCCAGAATGTCCTTGCTGTAGAATGCAGGTGATAAATGTTTTGTCTGCCTTCACA
GCAGTTTGCTGCCATGGACATAAATCCCCAAACCCTGAAATACAACCACAGAAAGCACTC
AACTGGTTTGACATTGCTAAGTATATCCTGTACACTTCTCCAGGCTGAATTGTATCTATC
CCCTTCTCTTTTCTTTTTTTCTGTTGCAAAAAATAAGCTGATTAATAATTGAAGTTTAGG
CAGCCTGCCATATTTGTCATAATTTTTCCTTTTTAACTTTTTTTCTTTTTTTTGTGAAGA
TAGAAAAAGGGCACTTAGCAAATTTGAATTTGTATAATAAAGCTTTCAGGTGTTATAGAA
ATCATAGACAAGCAAGTGCACATGATAAACATCAAAACATTATCCAGCTGAATAGTTACT
GCTGCACTTTCACTGAGATGTATTTGAACACTTGGTGAGTAGGGGGTTTATGTTGTGTTT
TTTTATTGTTGTTGTTGTTGTTTTTATTTTTGTGGAAGCACTTGCTATTTAGAACTGCCA
AAGTATATGTTCAGCAGTGTGCCCAGGTTTAAGGTGTAAATGGGACAAAATAAATTGTGA
AAGGAAGTGTAGTTGACTGAAAACTACAGTTGTAATAAGTCTTCCACTTTTTATAGGATT
TTTGAGCACACAATTATGCAAATATTTTAATGTTTATTAATGTTTACAGTGGAATTGTGA
ATAAGTTTTCAGTGGACTATCTTATCCCTTGACAAAAATATTTTGTCTTTTTTCTATGTA
ATTTCAGAGTTTTTATTTTGTTACAAAAAGACAAAAATGAAATATATAACAACAATGAAG
TTATTTAACAAGATTTCTAAAGCTGAAAATTTTGTGTAAAATAAGGTATTATCTTGCAAC
TTGTTAAATATATTTATTCAGACATTGGATGTTGTATTTTTATGTATTTTTTAAAATATT
AATAAAATTGAAAAAAAGAAAATTCTAGGTTAATTCACTCTTCAAATGACAATAGCTCTC
AGCTGTCCCTCTTACAGGAGGTTGCCTGCAGCGGCTTGCCTGTATTGAAGGGAGTCTGTC
TCAGTCCTTCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATGCAATGCCTCTGATTGGGCCTGAAACCTTGGTTTGCCATGAAGTAGATTTGGATGA
TTTGGATGAAAAAGATAAGACCAGCATTGAGGACGTAGCAGTGGAAAGCTCTGAGTCTAA
CTCTCTTGTTTCTGTTCCGCCTGCCCTACCTCCTGTAGTACAGCATAACTTCTCAGTAGC
TTCACCACTTACTCTCAGCCAAGATGAGTCTCGAAGTATAAAAAGTGAGAGTGACGTAAC
CATTGAAGTTGATAGTATTGCTGAAGAATCTCAAGAAGGTCTCTGTGAGAGGGAATCAGC
CAATGGATTTGAAACCAGTGTTGCCTCTGGTACCTGTAGTATAATTGTTCAAGAAAGAGA
GAGCAGGGAGAAGGGTCAGAAAAGACCAAGCGATGGAACTAGTGGATTGCTGGCAAAAAA
GCAGAAGCGAACCCCAAAGCGAACAAATGCTGTAGCCAAAAATGAAAAGAATGGAGCAGG
ACAAAGCAGTGATAGTGAAGATCTTCCTGCCCTAGACAATTCAAGTAAATGTACTCCAGT
AAAGCATCTTAGTGTATCAAAGCCACAGAAGCTTGTACGGTCTCCTGCAAGAATATCCCC
TCACATTAAAGATGGAGAAAAAGATAAACAGAAGGAAAAACATCCGAATTCATCCCCTCG
GACATATAAGTGGAGCTTTCAACTCAATGAATTAGATAATATGAACAGTACAGAGAGAAT
CTCTTTTCTCCAAGAAAAACTACAGGAAATCAGAAAATATTACATGTCTTTGAAGTCTGA
AGTTGCAACCATAGATAGGAGGAGAAAAAGATTAAAAAAGAAAGACAGAGAAGTGTCTCA
TGCAGGAGCCTCCATGTCATCTGCTTCCTCAGACACTGGAATGAGTCCCTCCTCCTCATC
GCCCCCCCAGAATGTCCTTGCTGTAGAATGCAGGTGATAAATGTTTTGTCTGCCTTCACA
GCAGTTTGCTGCCATGGACATAAATCCCCAAACCCTGAAATACAACCACAGAAAGCACTC
AACTGGTTTGACATTGCTAAGTATATCCTGTACACTTCTCCAGGCTGAATTGTATCTATC
CCCTTCTCTTTTCTTTTTTTCTGTTGCAAAAAATAAGCTGATTAATAATTGAAGTTTAGG
CAGCCTGCCATATTTGTCATAATTTTTCCTTTTTAACTTTTTTTCTTTTTTTTGTGAAGA
TAGAAAAAGGGCACTTAGCAAATTTGAATTTGTATAATAAAGCTTTCAGGTGTTATAGAA
ATCATAGACAAGCAAGTGCACATGATAAACATCAAAACATTATCCAGCTGAATAGTTACT
GCTGCACTTTCACTGAGATGTATTTGAACACTTGGTGAGTAGGGGGTTTATGTTGTGTTT
TTTTATTGTTGTTGTTGTTGTTTTTATTTTTGTGGAAGCACTTGCTATTTAGAACTGCCA
AAGTATATGTTCAGCAGTGTGCCCAGGTTTAAGGTGTAAATGGGACAAAATAAATTGTGA
AAGGAAGTGTAGTTGACTGAAAACTACAGTTGTAATAAGTCTTCCACTTTTTATAGGATT
TTTGAGCACACAATTATGCAAATATTTTAATGTTTATTAATGTTTACAGTGGAATTGTGA
ATAAGTTTTCAGTGGACTATCTTATCCCTTGACAAAAATATTTTGTCTTTTTTCTATGTA
ATTTCAGAGTTTTTATTTTGTTACAAAAAGACAAAAATGAAATATATAACAACAATGAAG
TTATTTAACAAGATTTCTAAAGCTGAAAATTTTGTGTAAAATAAGGTATTATCTTGCAAC
TTGTTAAATATATTTATTCAGACATTGGATGTTGTATTTTTATGTATTTTTTAAAATATT
AATAAAATTGAAAAAAAGAAAATTCTAGGTTAATTCACTCTTCAAATGACAATAGCTCTC
AGCTGTCCCTCTTACAGGAGGTTGCCTGCAGCGGCTTGCCTGTATTGAAGGGAGTCTGTC
TCAGTCCTTCTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8BYA2_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8BYA2_MOUSE

Predicted RNA structure(s): 5 entry(ies)

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Predicted RNA structure(s): 5 entry(ies)

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               240-359, + strand, RNAz p=0.592286
               

               
               951-1070, - strand, RNAz p=0.893392
               

               
               1286-1384, - strand, RNAz p=0.665218
               

               
               1451-1569, + strand, RNAz p=0.937866
               

               
               1874-1990, - strand, RNAz p=0.761637

Predicted RNA structure(s): 5 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               240-359, + strand, RNAz p=0.592286
               

               
               951-1070, - strand, RNAz p=0.893392
               

               
               1286-1384, - strand, RNAz p=0.665218
               

               
               1451-1569, + strand, RNAz p=0.937866
               

               
               1874-1990, - strand, RNAz p=0.761637

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_023001, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_023001, +

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-379, gnl|bosTau2|chr10 (48016008-48015630)
               

               
               1-379, gnl|Hg17|chr14 (57901398-57901776)
               

               
               1-379, gnl|Mm7|chr12 (69019535-69019912)
               


               
               478-686, gnl|bosTau2|chr10 (48010323-48010115)
               

               
               478-686, gnl|Hg17|chr14 (57902493-57902701)
               

               
               478-686, gnl|Mm7|chr12 (69030292-69030500)
               


               
               832-1990, gnl|bosTau2|chr10 (48004707-48003543)
               

               
               832-1990, gnl|Hg17|chr14 (57908355-57909512)
               

               
               832-1990, gnl|Mm7|chr12 (69041338-69042537)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-379, gnl|bosTau2|chr10 (48016008-48015630)
               

               
               1-379, gnl|Hg17|chr14 (57901398-57901776)
               

               
               1-379, gnl|Mm7|chr12 (69019535-69019912)
               


               
               478-686, gnl|bosTau2|chr10 (48010323-48010115)
               

               
               478-686, gnl|Hg17|chr14 (57902493-57902701)
               

               
               478-686, gnl|Mm7|chr12 (69030292-69030500)
               


               
               832-1990, gnl|bosTau2|chr10 (48004707-48003543)
               

               
               832-1990, gnl|Hg17|chr14 (57908355-57909512)
               

               
               832-1990, gnl|Mm7|chr12 (69041338-69042537)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               liv (0.292569)
               

               
               spl (0.286369)
               

               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               lnt (0.142308)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               cbl (0.114797)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.292569)
               

               
               spl (0.286369)
               

               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               lnt (0.142308)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               cbl (0.114797)

	240-359, + strand, RNAz p=0.592286
	951-1070, - strand, RNAz p=0.893392
	1286-1384, - strand, RNAz p=0.665218
	1451-1569, + strand, RNAz p=0.937866
	1874-1990, - strand, RNAz p=0.761637

	1-379, gnl\|bosTau2\|chr10 (48016008-48015630)
	1-379, gnl\|Hg17\|chr14 (57901398-57901776)
	1-379, gnl\|Mm7\|chr12 (69019535-69019912)

	478-686, gnl\|bosTau2\|chr10 (48010323-48010115)
	478-686, gnl\|Hg17\|chr14 (57902493-57902701)
	478-686, gnl\|Mm7\|chr12 (69030292-69030500)

	832-1990, gnl\|bosTau2\|chr10 (48004707-48003543)
	832-1990, gnl\|Hg17\|chr14 (57908355-57909512)
	832-1990, gnl\|Mm7\|chr12 (69041338-69042537)

	liv (0.292569)
	spl (0.286369)
	fty (0.17584)
	mcp (0.170648)
	lnt (0.142308)
	kid (0.129735)
	ret (0.128733)
	tra (0.123092)
	cbl (0.114797)