Non-Coding RNA Search

Ss1.1-Pig4-TMW8048B20.5

Sequence:


               
               ACTCGCTGGCTAAGCGCTGCATCTGCGTGTCGAATATCGTCCGGAGCTTGTCCTTTGTGC
CTGGGAATGACGCCGAAATGTCCAAACATCCAGGCCTGGTGCTGATCCTGGGGAAGCTGA
TTCTTCTTCACCACGAGCATCCCGAGAGAAAACGAGCGCCGCAGACCTACGAGAAGGAGG
AAGACGAGGACAAAGGGGTGGCCTGCAGCAAAGATGAGTGGTGGTGGGACTGCCTCGAGG
TCTTGAGGGATAACACGTTGGTCACTTTGGCCAACATTTCTGGGCAGCTAGACTTGTCTG
CGTACACGGAAAGCATCTGCTTGCCAATTTTGGATGGCTTGCTGCACTGGATGGTGTGCC
CGTCTGCGGAGGCACAGGACCCCTTTCCCACCGTGGGCCCCAACTCTGTCCTGTCGCCTC
AGAGACTTGTGCTGGAGACGCTGTGTAAACTCAGCATCCAGGACAATAATGTGGACCTGA
TCTTGGCCACGCCTCCATTTAGTCGTCAGGAGAAATTCTATGCCACGTTAGTTAGGTACG
TTGGGGATCGCAAAAACCCAGTCTGTCGAGAAATGTCCATGGCGCTTTTGTCGAACCTTG
CCCAGGGGGACGCGCTGGCTGCCAGGGCGATAGCTGTGCAAAAGGGGAGCATTGGCAACT
TGATAAGCTTCCTAGAGGATGGGGTCACCATGGCCCAGTATCAGCAGAGCCAGCATAACC
TCATGCACATGCAGCCCCCGCCTCTAGAGCCCCCTAGCGTGGACATGATGTGCAGGGCGG
CCAAGGCTCTGCTGGCCATGGCCAGAGTGGACGAGAACCGCTCAGAATTCCTTCTGCACG
AGGGTCGATTGCTGGATATCTCGATATCAGCTGTCCTGAACTCTCTGGTTGCGTCTGTCA
TCTGTGATGTACTGTTTCAGATTGGGCAGTTATGACACCAGTGAGAAGGCAGCATGTGTG
AGTGAAGACTAGAGGCTCCCGTATAACTGGCTGTTTTCTGTTCTTGTTTATCCAGCGTAG
GAAGAAGGAAAGAAAATCTCTGCTCCTCTGCCCCATTCACTATTTACCAATTGGGAATTA
AAGAGATAATTAATTCGAACAGTTATGAAATTAATATTCGCTGTCTGTGTGCATAAGTAC
ATCCTTTTGGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTCGCTGGCTAAGCGCTGCATCTGCGTGTCGAATATCGTCCGGAGCTTGTCCTTTGTGC
CTGGGAATGACGCCGAAATGTCCAAACATCCAGGCCTGGTGCTGATCCTGGGGAAGCTGA
TTCTTCTTCACCACGAGCATCCCGAGAGAAAACGAGCGCCGCAGACCTACGAGAAGGAGG
AAGACGAGGACAAAGGGGTGGCCTGCAGCAAAGATGAGTGGTGGTGGGACTGCCTCGAGG
TCTTGAGGGATAACACGTTGGTCACTTTGGCCAACATTTCTGGGCAGCTAGACTTGTCTG
CGTACACGGAAAGCATCTGCTTGCCAATTTTGGATGGCTTGCTGCACTGGATGGTGTGCC
CGTCTGCGGAGGCACAGGACCCCTTTCCCACCGTGGGCCCCAACTCTGTCCTGTCGCCTC
AGAGACTTGTGCTGGAGACGCTGTGTAAACTCAGCATCCAGGACAATAATGTGGACCTGA
TCTTGGCCACGCCTCCATTTAGTCGTCAGGAGAAATTCTATGCCACGTTAGTTAGGTACG
TTGGGGATCGCAAAAACCCAGTCTGTCGAGAAATGTCCATGGCGCTTTTGTCGAACCTTG
CCCAGGGGGACGCGCTGGCTGCCAGGGCGATAGCTGTGCAAAAGGGGAGCATTGGCAACT
TGATAAGCTTCCTAGAGGATGGGGTCACCATGGCCCAGTATCAGCAGAGCCAGCATAACC
TCATGCACATGCAGCCCCCGCCTCTAGAGCCCCCTAGCGTGGACATGATGTGCAGGGCGG
CCAAGGCTCTGCTGGCCATGGCCAGAGTGGACGAGAACCGCTCAGAATTCCTTCTGCACG
AGGGTCGATTGCTGGATATCTCGATATCAGCTGTCCTGAACTCTCTGGTTGCGTCTGTCA
TCTGTGATGTACTGTTTCAGATTGGGCAGTTATGACACCAGTGAGAAGGCAGCATGTGTG
AGTGAAGACTAGAGGCTCCCGTATAACTGGCTGTTTTCTGTTCTTGTTTATCCAGCGTAG
GAAGAAGGAAAGAAAATCTCTGCTCCTCTGCCCCATTCACTATTTACCAATTGGGAATTA
AAGAGATAATTAATTCGAACAGTTATGAAATTAATATTCGCTGTCTGTGTGCATAAGTAC
ATCCTTTTGGGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q91WZ6_RATRT

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q91WZ6_RATRT

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               360-479, - strand, RNAz p=0.679492
               

               
               600-879, - strand, RNAz p=0.942881
               

               
               997-1114, - strand, RNAz p=0.915085

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               360-479, - strand, RNAz p=0.679492
               

               
               600-879, - strand, RNAz p=0.942881
               

               
               997-1114, - strand, RNAz p=0.915085

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1151, gnl|bosTau2|chr9 (56950090-56948938)
               

               
               1-1151, gnl|Hg17|chr6 (157620204-157621355)
               

               
               1-1151, gnl|Mm7|chr17 (5287431-5288578)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1151, gnl|bosTau2|chr9 (56950090-56948938)
               

               
               1-1151, gnl|Hg17|chr6 (157620204-157621355)
               

               
               1-1151, gnl|Mm7|chr17 (5287431-5288578)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               ldo (0.194005)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               spl (0.143184)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

Expressed library(ies): 8 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ldo (0.194005)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               spl (0.143184)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

	360-479, - strand, RNAz p=0.679492
	600-879, - strand, RNAz p=0.942881
	997-1114, - strand, RNAz p=0.915085

	1-1151, gnl\|bosTau2\|chr9 (56950090-56948938)
	1-1151, gnl\|Hg17\|chr6 (157620204-157621355)
	1-1151, gnl\|Mm7\|chr17 (5287431-5288578)

	ldo (0.194005)
	ton (0.1755)
	fbs (0.175346)
	spl (0.143184)
	bla (0.124347)
	pgl (0.118483)
	ecc (0.115035)
	jej (0.0989218)