Non-Coding RNA Search

Ss1.1-Pig4-TMW8048C06.3

Sequence:


               
               GCAACCCCAGCTCATGTGAGGCTCGCCCGCACCCGCCCGCCTCCTTCCCATCTCCCCCGG
CTCGGGCCCCTCCCGCCTCCCGGTACATCCACCCCGTTCGCGTGCCCTGGGTCCAGAGGA
GAAGGGCCCAGAGGGAAAGAAGAAAGAACAGTGAAGGCAGGACGCCCGTCGCCTCCTCGG
AGTCCCGCGCAGTCTGTCCGGGCGACTTCCCTAGTGCCCACGCCTTTGCCAGACCCCCGG
CCTCGGCCCCGCGGTGACAGCAGAGAGCGGCTTCTGAGCGCAGGCATAGCGGCGCAAGAC
AGCCGGGCGCAGGACAAGCCCGCCGGACCCGACCGTCAACTCTCAGCTGTATGGGACTAT
CAGGAAAAAAACAAAGAAAAAATGTAGACAAAGCAAAAGCTCTTTCTGTCCTGTCCATCT
CTCTCGTCTCCTTTCGCTCTGTATCTGTGCGCTGACGAAGTCGAGGTCGTCGTCCGTCCG
CGTCAGCTGTCCTCGTTCTTCCGCCTCTGAAAAACAGTCACCGGCTTCGAGGAGGCTTGG
TTCACTGGGCCGCCCAGTTCCGGATACTGGAACATTTTGTCCATTCGGATCTTTTCCTGG
GCCTGCCTAACCATCTGTGTGGCTCTTTTGGGTATAGGGGAAAATTGGAGGGAGGGAGTT
TTATTTATTGAAAAATGGACTTGCCTGAGGCTGAGTGTTCGGCCAATTAGCAGTTCTGCG
GGGCGTGCGAGGAGGAGCGCAGGGTCCAGACGGACCCCTTACTTTAAACGCACCCAGAAA
AACGAATAGGGAGGACCTGGAGCTTTTTAACTTATACAGTAACTTTTGTACTTCGCTAGT
ATGGAGAGGTTGGAGCCGAATGATTTGCAGTTTTTTCATGTCCCATATTATTTAAAAAAG
AAAAAGAGAAAGAAATGAACCCAACACAATTTTCTCATCTCGGGAAGAACGCTTGATCTC
TGCCTGGCTAAGAAGGAAAATCCTAATTCTTTCCTTGTGGAGAGAAAGAACCAATGACCA
GAGAGAGAAAACAGGCAGGCATGTGCCAGTGCCCTAATGCCAGGGGGCTTTAAAGTTAGA
TGAAAGCAGCTTTACATCAATCCCCAGAGGCTTGACCACAGAATAATGCCAGTCATCACC
CAATGCACAGTCTTCAGTGCAGGATCTAATTGCTGTACATATTATTGTTATTAATTATTA
TTGTTATGATTATTGTCCTGTAAACATGTTGCACAAGCTTAGCTTTTTTTCCGTTCTGTT
GTCTGTGGCTGTAAAACCTGATGCTTTGTGAAATGAGAATCTTGACATTTTACTTGTGAA
ATTTGGAAAATGTGATCAACTGAAATCAACTGTGTTTTGTGTTCTCTATGTCAAAGTTTA
GTTTTATATTGAGAATGTTAACTTATTGCTTTGTATCTTGGGGGGGAAAGAACTTTGTAA
ATAAGTTATAAAGTTTCTTTGAGACAGTAAAATTATGGTTTCGAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAACCCCAGCTCATGTGAGGCTCGCCCGCACCCGCCCGCCTCCTTCCCATCTCCCCCGG
CTCGGGCCCCTCCCGCCTCCCGGTACATCCACCCCGTTCGCGTGCCCTGGGTCCAGAGGA
GAAGGGCCCAGAGGGAAAGAAGAAAGAACAGTGAAGGCAGGACGCCCGTCGCCTCCTCGG
AGTCCCGCGCAGTCTGTCCGGGCGACTTCCCTAGTGCCCACGCCTTTGCCAGACCCCCGG
CCTCGGCCCCGCGGTGACAGCAGAGAGCGGCTTCTGAGCGCAGGCATAGCGGCGCAAGAC
AGCCGGGCGCAGGACAAGCCCGCCGGACCCGACCGTCAACTCTCAGCTGTATGGGACTAT
CAGGAAAAAAACAAAGAAAAAATGTAGACAAAGCAAAAGCTCTTTCTGTCCTGTCCATCT
CTCTCGTCTCCTTTCGCTCTGTATCTGTGCGCTGACGAAGTCGAGGTCGTCGTCCGTCCG
CGTCAGCTGTCCTCGTTCTTCCGCCTCTGAAAAACAGTCACCGGCTTCGAGGAGGCTTGG
TTCACTGGGCCGCCCAGTTCCGGATACTGGAACATTTTGTCCATTCGGATCTTTTCCTGG
GCCTGCCTAACCATCTGTGTGGCTCTTTTGGGTATAGGGGAAAATTGGAGGGAGGGAGTT
TTATTTATTGAAAAATGGACTTGCCTGAGGCTGAGTGTTCGGCCAATTAGCAGTTCTGCG
GGGCGTGCGAGGAGGAGCGCAGGGTCCAGACGGACCCCTTACTTTAAACGCACCCAGAAA
AACGAATAGGGAGGACCTGGAGCTTTTTAACTTATACAGTAACTTTTGTACTTCGCTAGT
ATGGAGAGGTTGGAGCCGAATGATTTGCAGTTTTTTCATGTCCCATATTATTTAAAAAAG
AAAAAGAGAAAGAAATGAACCCAACACAATTTTCTCATCTCGGGAAGAACGCTTGATCTC
TGCCTGGCTAAGAAGGAAAATCCTAATTCTTTCCTTGTGGAGAGAAAGAACCAATGACCA
GAGAGAGAAAACAGGCAGGCATGTGCCAGTGCCCTAATGCCAGGGGGCTTTAAAGTTAGA
TGAAAGCAGCTTTACATCAATCCCCAGAGGCTTGACCACAGAATAATGCCAGTCATCACC
CAATGCACAGTCTTCAGTGCAGGATCTAATTGCTGTACATATTATTGTTATTAATTATTA
TTGTTATGATTATTGTCCTGTAAACATGTTGCACAAGCTTAGCTTTTTTTCCGTTCTGTT
GTCTGTGGCTGTAAAACCTGATGCTTTGTGAAATGAGAATCTTGACATTTTACTTGTGAA
ATTTGGAAAATGTGATCAACTGAAATCAACTGTGTTTTGTGTTCTCTATGTCAAAGTTTA
GTTTTATATTGAGAATGTTAACTTATTGCTTTGTATCTTGGGGGGGAAAGAACTTTGTAA
ATAAGTTATAAAGTTTCTTTGAGACAGTAAAATTATGGTTTCGAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1488, gnl|bosTau2|chr2 (17587099-17585632)
               

               
               1-1488, gnl|Hg17|chr2 (172778474-172779909)
               

               
               1-1488, gnl|Mm7|chr2 (71376210-71377689)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1488, gnl|bosTau2|chr2 (17587099-17585632)
               

               
               1-1488, gnl|Hg17|chr2 (172778474-172779909)
               

               
               1-1488, gnl|Mm7|chr2 (71376210-71377689)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eye (0.170503)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)

	1-1488, gnl\|bosTau2\|chr2 (17587099-17585632)
	1-1488, gnl\|Hg17\|chr2 (172778474-172779909)
	1-1488, gnl\|Mm7\|chr2 (71376210-71377689)