Non-Coding RNA Search

Ss1.1-Pig4-TMW8048C18.5

Sequence:


               
               GGGCCCCAGGCCCCTCCCAGGCTCTGAGTCTCCCCGGCTGCAGGCGGATGGATGGGGCTT
CTTCAGGCGGTGGCGGCAGCAGCGAAGGTGGCGGTGGCAGCAGCGGCAGCGGCTATGGTG
TGGTGGCTCGATTCTCCCAGTGCCTGGCTGAGTTTCGGACGTGGTTAAGAACCAACTGGT
TGAGGTTCAATGCAGACAAGACGGATGTGATGCTGGTAGGCAGGGGCACGCTTGGAGATT
AAGGGAGGGAAAGTCCAAACTCCCTCAAGTAATATAAATGTTATATTACTCTTCTAGTGT
ATGAGAACGACTGATGGGCTAATAATTTCCAGAGTTTGGATGAGATAAAAATAACATGTC
AAAAATATTAAAACTATTGAAATATCAGTTTGTGGTAATCTGATAAAGTGGAACCACTGG
ATACAATTCTTTATGTAAAAATTACGAAAAGAAAAACCAGAACTGTTCTTTGAAGAATCA
AAAGGCTATATATATGTGTGTGTATTTGGAGTGGCATTAATAAAAATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCCCCAGGCCCCTCCCAGGCTCTGAGTCTCCCCGGCTGCAGGCGGATGGATGGGGCTT
CTTCAGGCGGTGGCGGCAGCAGCGAAGGTGGCGGTGGCAGCAGCGGCAGCGGCTATGGTG
TGGTGGCTCGATTCTCCCAGTGCCTGGCTGAGTTTCGGACGTGGTTAAGAACCAACTGGT
TGAGGTTCAATGCAGACAAGACGGATGTGATGCTGGTAGGCAGGGGCACGCTTGGAGATT
AAGGGAGGGAAAGTCCAAACTCCCTCAAGTAATATAAATGTTATATTACTCTTCTAGTGT
ATGAGAACGACTGATGGGCTAATAATTTCCAGAGTTTGGATGAGATAAAAATAACATGTC
AAAAATATTAAAACTATTGAAATATCAGTTTGTGGTAATCTGATAAAGTGGAACCACTGG
ATACAATTCTTTATGTAAAAATTACGAAAAGAAAAACCAGAACTGTTCTTTGAAGAATCA
AAAGGCTATATATATGTGTGTGTATTTGGAGTGGCATTAATAAAAATC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               115-497, gnl|bosTau2|chr2 (20400204-20400584)
               

               
               115-497, gnl|Hg17|chr1 (67103846-67104225)
               

               
               115-497, gnl|Mm7|chr4 (102491999-102492377)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               115-497, gnl|bosTau2|chr2 (20400204-20400584)
               

               
               115-497, gnl|Hg17|chr1 (67103846-67104225)
               

               
               115-497, gnl|Mm7|chr4 (102491999-102492377)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               sto (0.179824)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               cst (0.140036)
               

               
               tra (0.123092)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sto (0.179824)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               cst (0.140036)
               

               
               tra (0.123092)

	115-497, gnl\|bosTau2\|chr2 (20400204-20400584)
	115-497, gnl\|Hg17\|chr1 (67103846-67104225)
	115-497, gnl\|Mm7\|chr4 (102491999-102492377)

	sto (0.179824)
	eye (0.170503)
	cut (0.169924)
	cje (0.165235)
	cst (0.140036)
	tra (0.123092)