Non-Coding RNA Search

Ss1.1-Pig4-TMW8048C21.5

Sequence:


               
               TTCTTGTCCACAATGTAGTTCCTCTCGACCAAACAACCTTCAAAGGGGCCACGCTGCAGC
CTCAGCTAAGCTCCAGGAGTCACAGTGGCTTGGCTCAAGAGCAAGATTTCTCCCTTATCT
CTTAAGAAAACCATCATGGCACCAACATCTGGAGTCTTGAAAGAAACTCTTAACTGAATC
TGGGTTGTGGCATGGCTTCATCTCTGACACCGCTTTTAAGACACTTTCCCATGCCTAGAC
CACAAAAGAGCTTCCTTTTCTAAGAAGGTAGTAGGGTTTAGGGGATGGTAGGAATTTGGG
GGAAGGCAGAGATAAAAATCAAATTGAAACTGTCATTCATTTTTCTATTTCTCAAACCAG
CAAGAGGGTAGTGGAAGAAGCAGTTTGCAAAGATATGCCACCTGACTTCAATTACTGAAG
GAGGCCTCATTTTTGTGCCTTAGTTTCTCTTAGAGAACCAGAAGACAGGAAAGGCTTTTT
GATGATTGTCCCTGAGTGTATCTTTGTGTGTGTTCTTTTATATTTATGCAGTTGGGAGCA
TTCAAAATAGCCACAAAGGAACAGTATTATACTGGATCCTAGTGCAGGTAAATGATCAGA
GACCGATCAAATCAGTGTCATTCAGTCTTTGATACAAATGGGTAGAGCTACAAATAGAAG
TGAACTTTGTATCTGCTCAGAACTACCAATCAAGAAGCACATGGGTAGCATGGAAGAAAT
CCAAAAAAGAATCCTAGAAGATACTGCATGCAAAGGCAATGAAGGGACTAGTTAAGGGTT
TGTTTTTCAGTCCCGGGCCAGGGATTGAATCCGAACTACAGCTGTGGCAACACTGGATCC
TTTAACCCACTGCGCCTGGCTGGGGATAGAACCTGAGCTTCCACAGCAACCTAAACTACT
GCAGTCAGGTTCTTAACCCACTGCGCCACAGCACGAACTTCTTCAACAAAATATTTTAAG
GACTGGTGTTGGTAATTACAGTCAATTTAAAAAATCTTTTAGGGCATTTCCTTACATTAT
CTTGATATTAATGTCTACTGTACTTGCTAGAAATCTACATTTGGAGAACTTTTATCAAAA
GGAATGCTGCTGAAGGAAGGCTGAGGAATTGGTAATAGTTCATCCCCTGTTTTGAGTACA
TACTTCTACTAGAGTTTGTGATTTTCTTGGACTAACATATATTCACTTAGGTGGAGAAAA
GAGTGTAGGACCACAGTCTTCTCATATTTGTAAATAATCTTTTGTTGAACTTGTTTTGAC
CATTAAACTAGACATAGTTATTTTACGGAAAAATTGGGAAACTTTTGATAATAGTGTGGA
ACTGAATTAATATTTAATGTATATTGAACTGTCAATCACAAATAAAAACTTTTGATTATG
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCTTGTCCACAATGTAGTTCCTCTCGACCAAACAACCTTCAAAGGGGCCACGCTGCAGC
CTCAGCTAAGCTCCAGGAGTCACAGTGGCTTGGCTCAAGAGCAAGATTTCTCCCTTATCT
CTTAAGAAAACCATCATGGCACCAACATCTGGAGTCTTGAAAGAAACTCTTAACTGAATC
TGGGTTGTGGCATGGCTTCATCTCTGACACCGCTTTTAAGACACTTTCCCATGCCTAGAC
CACAAAAGAGCTTCCTTTTCTAAGAAGGTAGTAGGGTTTAGGGGATGGTAGGAATTTGGG
GGAAGGCAGAGATAAAAATCAAATTGAAACTGTCATTCATTTTTCTATTTCTCAAACCAG
CAAGAGGGTAGTGGAAGAAGCAGTTTGCAAAGATATGCCACCTGACTTCAATTACTGAAG
GAGGCCTCATTTTTGTGCCTTAGTTTCTCTTAGAGAACCAGAAGACAGGAAAGGCTTTTT
GATGATTGTCCCTGAGTGTATCTTTGTGTGTGTTCTTTTATATTTATGCAGTTGGGAGCA
TTCAAAATAGCCACAAAGGAACAGTATTATACTGGATCCTAGTGCAGGTAAATGATCAGA
GACCGATCAAATCAGTGTCATTCAGTCTTTGATACAAATGGGTAGAGCTACAAATAGAAG
TGAACTTTGTATCTGCTCAGAACTACCAATCAAGAAGCACATGGGTAGCATGGAAGAAAT
CCAAAAAAGAATCCTAGAAGATACTGCATGCAAAGGCAATGAAGGGACTAGTTAAGGGTT
TGTTTTTCAGTCCCGGGCCAGGGATTGAATCCGAACTACAGCTGTGGCAACACTGGATCC
TTTAACCCACTGCGCCTGGCTGGGGATAGAACCTGAGCTTCCACAGCAACCTAAACTACT
GCAGTCAGGTTCTTAACCCACTGCGCCACAGCACGAACTTCTTCAACAAAATATTTTAAG
GACTGGTGTTGGTAATTACAGTCAATTTAAAAAATCTTTTAGGGCATTTCCTTACATTAT
CTTGATATTAATGTCTACTGTACTTGCTAGAAATCTACATTTGGAGAACTTTTATCAAAA
GGAATGCTGCTGAAGGAAGGCTGAGGAATTGGTAATAGTTCATCCCCTGTTTTGAGTACA
TACTTCTACTAGAGTTTGTGATTTTCTTGGACTAACATATATTCACTTAGGTGGAGAAAA
GAGTGTAGGACCACAGTCTTCTCATATTTGTAAATAATCTTTTGTTGAACTTGTTTTGAC
CATTAAACTAGACATAGTTATTTTACGGAAAAATTGGGAAACTTTTGATAATAGTGTGGA
ACTGAATTAATATTTAATGTATATTGAACTGTCAATCACAAATAAAAACTTTTGATTATG
AAAAAAAAAAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               4-209, gnl|bosTau2|chr10 (53667019-53666817)
               

               
               4-209, gnl|Mm7|chr12 (77134300-77134115)
               


               
               224-642, gnl|bosTau2|chr10 (53666824-53666400)
               

               
               224-642, gnl|Mm7|chr12 (77134122-77133712)
               


               
               939-1379, gnl|bosTau2|chr10 (53666129-53665690)
               

               
               939-1379, gnl|Hg17|chr14 (67213800-67213329)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-209, gnl|bosTau2|chr10 (53667019-53666817)
               

               
               4-209, gnl|Mm7|chr12 (77134300-77134115)
               


               
               224-642, gnl|bosTau2|chr10 (53666824-53666400)
               

               
               224-642, gnl|Mm7|chr12 (77134122-77133712)
               


               
               939-1379, gnl|bosTau2|chr10 (53666129-53665690)
               

               
               939-1379, gnl|Hg17|chr14 (67213800-67213329)

Expressed library(ies): 29 entry(ies)

More info

Expressed library(ies): 29 entry(ies)

Help | Less info


               
               cte (1.75644)
               

               
               sug (1.4002)
               

               
               spc (0.566829)
               

               
               sin (0.524843)
               

               
               cki (0.495704)
               

               
               pan (0.471921)
               

               
               tes (0.415628)
               

               
               duo (0.345602)
               

               
               cut (0.339847)
               

               
               fco (0.314416)
               

               
               lun (0.300978)
               

               
               lin (0.291206)
               

               
               lyg (0.266205)
               

               
               bla (0.248694)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               fli (0.202881)
               

               
               mgm (0.180343)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               cje (0.165235)
               

               
               mga (0.160205)
               

               
               eli (0.151814)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               cov (0.132153)
               

               
               cty (0.10408)

Expressed library(ies): 29 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (1.75644)
               

               
               sug (1.4002)
               

               
               spc (0.566829)
               

               
               sin (0.524843)
               

               
               cki (0.495704)
               

               
               pan (0.471921)
               

               
               tes (0.415628)
               

               
               duo (0.345602)
               

               
               cut (0.339847)
               

               
               fco (0.314416)
               

               
               lun (0.300978)
               

               
               lin (0.291206)
               

               
               lyg (0.266205)
               

               
               bla (0.248694)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               fli (0.202881)
               

               
               mgm (0.180343)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               cje (0.165235)
               

               
               mga (0.160205)
               

               
               eli (0.151814)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               cov (0.132153)
               

               
               cty (0.10408)

	4-209, gnl\|bosTau2\|chr10 (53667019-53666817)
	4-209, gnl\|Mm7\|chr12 (77134300-77134115)

	224-642, gnl\|bosTau2\|chr10 (53666824-53666400)
	224-642, gnl\|Mm7\|chr12 (77134122-77133712)

	939-1379, gnl\|bosTau2\|chr10 (53666129-53665690)
	939-1379, gnl\|Hg17\|chr14 (67213800-67213329)

	cte (1.75644)
	sug (1.4002)
	spc (0.566829)
	sin (0.524843)
	cki (0.495704)
	pan (0.471921)
	tes (0.415628)
	duo (0.345602)
	cut (0.339847)
	fco (0.314416)
	lun (0.300978)
	lin (0.291206)
	lyg (0.266205)
	bla (0.248694)
	cbe (0.239234)
	mgp (0.230681)
	fli (0.202881)
	mgm (0.180343)
	fbs (0.175346)
	rec (0.17307)
	eye (0.170503)
	cje (0.165235)
	mga (0.160205)
	eli (0.151814)
	ski (0.146735)
	hyp (0.142837)
	ssp (0.13552)
	cov (0.132153)
	cty (0.10408)