Ss1.1-Pig4-TMW8048D02.3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCCCTCGATAAGATACTGCGCATTGACCAGCACGGCAGAAGCTTCCCTTGTGCCTCCTC CCCCACTCGCGAGCCGGCAGCCCTCGTTTCGTGATCAGCATGGGGGACTCCAACGTGGAT GCTGGCACCACCACGTCCGAGATGGTGGCTGAAGAAGTGTCCCTTTTCAGCGCCACAGAC ATGGTCCTGTTTTCTCTCATCGTGGGTCTCCTGACCTACTGGTTCATCTTCAGAAAGAAA AAAGACGAAGTCCCCGAATTCACCAAAATTGAGACCACGACCTCCTCCGTCAAAGACAGC AGCTTCGTGGAAAAGATGAAGAAGACGGGCAGGAACATCATCGTGTTCTACGGCTCCCAG ACGGGGACGGCGGAGGAGTTCGCCAACCGCTTGTCCAAGGACGCCCACCGCTACGGGATG CGGGGCATGGCCGCGGACCCCGAGGAGTATGACCTGTCTGACCTGAGCAGCCTGCCAGAG ATCGAGAACGCCCTGGCAGTGTTCTGCATGGCCACCTACGGCGAGGGGGACCCCACTGAC AATGCCCAGGACTTCTACGACTGGCTGCAGGAGGCAGACGTGGACCTCTCTGGAGTCAAG TATGCGGTATTCGGCCTTGGGAACAAGACCTACGAGCACTTCAATGCCATGGGCAAGTAT GTGGACAAGCGGCTGGAGCAGCTCGGGGCCCAGCGGATCTTTGATCTGGGGCTGGGCGAC GACGACGGCAACCTCGAGGAGGACTTCATCACGTGGCGAGAGCAGTTCTGGCCAGCCGTG TGCGAGCACTTCGGCGTGGAAGCCACTGGAGAGGAGTCCAGCATCCGCCAGTATGAGCTC GTGGTCCACACAGACATGGACACGGCCGTGGTGTACACGGGCGAGATGGGGCGCCTGAAG AGCTATGAGAACCAGAAGCCCCCCTTTGACGCCAAGAACCCGTTCTTGGCTGTCGTCACC ACCAACCGGAAGCTGAACCAGGGGACCGAGCGACACCTCATGCACCTGGAACTGGACATC TCAGATTCCAAAATCAGGTATGAATCTGGGGACCACGTGGCTGTGTACCCGGCCAACGAC TCTGCCCTGGTCAACCAACTTGGCGAGATCCTGGGCACCGATCTGGATATCGTCATGTCC CTGAACAATCTTGACGAGGAGTCCAACAAGAGGCACCCGTTCCCCTGCCCCACCACCTAC CGCACGGCCCTCACCTACTACCTGGACATCACCAACCCGCCGCGCACCAATGTGCTCTAC GAGCTGGCCCAGTACGCCTCCGAGCCCTCGGAGCAGGAGCAGCTGCGCAAGATGGCCTCG TCCTCCGGCGAGGGCAAGGAGCTGTACCTGAGCTGGGTGGTGGAGGCCCGGAGGCACATC CTGGCCATCCTGCAGGACTACCCGTCCCTGCGGCCCCCCATCGACCACCTGTGCGAGCTG CTGCCGCGCCTCCAGGCCCGCTACTACTCCATCGCCTCGTCCTCCAAGGTGCACCCCAAC TCCGTGCACATCTGCGCCGTGGTGGTGGAGTATGAGACCAAGTCAGGCCGCGTCAACAAA GGCGTGGCCACCAGCTGGCTACGGGCCAAGGAGCCGGCCGGCGAGAACGGCCGCCGGGCC CTGGTGCCCATGTTCGTGCGCAAGTCCCAGTTCCGCCTGCCCTTCAAGGCCACCACGCCC GTCATCATGGTGGGCCCGGGCACCGGGGTGGCCCCCTTCATCGGCTTCATCCAGGAGCGC GCCTGGCTGCAGGAGCAGGGCAAGGAGGTGGGGGAGACGCTGCTCTACTACGGCTGCCGC CGCTCTGACGAGGACTACCTGTACCGCGAGGAACTGGCCCAGTTCCACGCGAAGGGCGCC CTCACCCGGCTCAGCGTGGCCTTCTCCCGAGAGCAGCCCCAGAAGGTCTACGTGCAGCAC TTACTCAAGAGGGACAAGGAGCACCTGTGGAAGCTGATCCACGACGGGGGCGCCCACATC TACATCTGCGGGGACGCTCGGAACATGGCACGGGACGTGCAGAACACCTTCTGCGACATC GTGGCTGAGCAGGGCCCCATGGAGCACGCCCAGGCTGTGGACTATGTCAAGAAGCTGATG ACCAAGGGCCGCTACTCCCTGGACGTGTGGAGCTAGGAGCCGCCGGCCGCCGCCTCTGCC CTCACGCCCCAGACTCGCTCCCCATCCTAATCACTTCCTCACTCTCTTCTGCCAGCCGCC CCGGGGAGGGGCGTCTGCTGGGCTCTGCCCAGGGAGGCAGTCCCGGAGATGAGAAGGAGA TGGCTCCAGGCCCAAGTTGTGCCTCCCGCCCCCGCCCCCGGGGGCGTGGCCGGGGTGACA GGCCTGAGGTTTGATGAACACCCGGGGTCCTCCGGGGCTGAACAGAAGGGGCTCCTCTCA GCTGAGTGGGGCCTGGCCTCCCTGTGATTTTCAATGAGTGTAAATAATTTTAAATAAGCT CCGGCCCTTGGAATAAAGTTCTGTTTTCTGTAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCCCTCGATAAGATACTGCGCATTGACCAGCACGGCAGAAGCTTCCCTTGTGCCTCCTC CCCCACTCGCGAGCCGGCAGCCCTCGTTTCGTGATCAGCATGGGGGACTCCAACGTGGAT GCTGGCACCACCACGTCCGAGATGGTGGCTGAAGAAGTGTCCCTTTTCAGCGCCACAGAC ATGGTCCTGTTTTCTCTCATCGTGGGTCTCCTGACCTACTGGTTCATCTTCAGAAAGAAA AAAGACGAAGTCCCCGAATTCACCAAAATTGAGACCACGACCTCCTCCGTCAAAGACAGC AGCTTCGTGGAAAAGATGAAGAAGACGGGCAGGAACATCATCGTGTTCTACGGCTCCCAG ACGGGGACGGCGGAGGAGTTCGCCAACCGCTTGTCCAAGGACGCCCACCGCTACGGGATG CGGGGCATGGCCGCGGACCCCGAGGAGTATGACCTGTCTGACCTGAGCAGCCTGCCAGAG ATCGAGAACGCCCTGGCAGTGTTCTGCATGGCCACCTACGGCGAGGGGGACCCCACTGAC AATGCCCAGGACTTCTACGACTGGCTGCAGGAGGCAGACGTGGACCTCTCTGGAGTCAAG TATGCGGTATTCGGCCTTGGGAACAAGACCTACGAGCACTTCAATGCCATGGGCAAGTAT GTGGACAAGCGGCTGGAGCAGCTCGGGGCCCAGCGGATCTTTGATCTGGGGCTGGGCGAC GACGACGGCAACCTCGAGGAGGACTTCATCACGTGGCGAGAGCAGTTCTGGCCAGCCGTG TGCGAGCACTTCGGCGTGGAAGCCACTGGAGAGGAGTCCAGCATCCGCCAGTATGAGCTC GTGGTCCACACAGACATGGACACGGCCGTGGTGTACACGGGCGAGATGGGGCGCCTGAAG AGCTATGAGAACCAGAAGCCCCCCTTTGACGCCAAGAACCCGTTCTTGGCTGTCGTCACC ACCAACCGGAAGCTGAACCAGGGGACCGAGCGACACCTCATGCACCTGGAACTGGACATC TCAGATTCCAAAATCAGGTATGAATCTGGGGACCACGTGGCTGTGTACCCGGCCAACGAC TCTGCCCTGGTCAACCAACTTGGCGAGATCCTGGGCACCGATCTGGATATCGTCATGTCC CTGAACAATCTTGACGAGGAGTCCAACAAGAGGCACCCGTTCCCCTGCCCCACCACCTAC CGCACGGCCCTCACCTACTACCTGGACATCACCAACCCGCCGCGCACCAATGTGCTCTAC GAGCTGGCCCAGTACGCCTCCGAGCCCTCGGAGCAGGAGCAGCTGCGCAAGATGGCCTCG TCCTCCGGCGAGGGCAAGGAGCTGTACCTGAGCTGGGTGGTGGAGGCCCGGAGGCACATC CTGGCCATCCTGCAGGACTACCCGTCCCTGCGGCCCCCCATCGACCACCTGTGCGAGCTG CTGCCGCGCCTCCAGGCCCGCTACTACTCCATCGCCTCGTCCTCCAAGGTGCACCCCAAC TCCGTGCACATCTGCGCCGTGGTGGTGGAGTATGAGACCAAGTCAGGCCGCGTCAACAAA GGCGTGGCCACCAGCTGGCTACGGGCCAAGGAGCCGGCCGGCGAGAACGGCCGCCGGGCC CTGGTGCCCATGTTCGTGCGCAAGTCCCAGTTCCGCCTGCCCTTCAAGGCCACCACGCCC GTCATCATGGTGGGCCCGGGCACCGGGGTGGCCCCCTTCATCGGCTTCATCCAGGAGCGC GCCTGGCTGCAGGAGCAGGGCAAGGAGGTGGGGGAGACGCTGCTCTACTACGGCTGCCGC CGCTCTGACGAGGACTACCTGTACCGCGAGGAACTGGCCCAGTTCCACGCGAAGGGCGCC CTCACCCGGCTCAGCGTGGCCTTCTCCCGAGAGCAGCCCCAGAAGGTCTACGTGCAGCAC TTACTCAAGAGGGACAAGGAGCACCTGTGGAAGCTGATCCACGACGGGGGCGCCCACATC TACATCTGCGGGGACGCTCGGAACATGGCACGGGACGTGCAGAACACCTTCTGCGACATC GTGGCTGAGCAGGGCCCCATGGAGCACGCCCAGGCTGTGGACTATGTCAAGAAGCTGATG ACCAAGGGCCGCTACTCCCTGGACGTGTGGAGCTAGGAGCCGCCGGCCGCCGCCTCTGCC CTCACGCCCCAGACTCGCTCCCCATCCTAATCACTTCCTCACTCTCTTCTGCCAGCCGCC CCGGGGAGGGGCGTCTGCTGGGCTCTGCCCAGGGAGGCAGTCCCGGAGATGAGAAGGAGA TGGCTCCAGGCCCAAGTTGTGCCTCCCGCCCCCGCCCCCGGGGGCGTGGCCGGGGTGACA GGCCTGAGGTTTGATGAACACCCGGGGTCCTCCGGGGCTGAACAGAAGGGGCTCCTCTCA GCTGAGTGGGGCCTGGCCTCCCTGTGATTTTCAATGAGTGTAAATAATTTTAAATAAGCT CCGGCCCTTGGAATAAAGTTCTGTTTTCTGTAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 88-279, gnl|bosTau2|chr25 (31573234-31573043) | |
| 88-279, gnl|canFam2|chr6 (10288829-10289007) | |
| 88-279, gnl|dasNov1|scaffold_18972 (7490-7310) | |
| 88-279, gnl|echTel1|scaffold_286786 (1873-2047) | |
| 88-279, gnl|hg17|chr7 (75227907-75228087) | |
| 88-279, gnl|Hg17|chr7 (75227959-75228150) | |
| 88-279, gnl|mm7|chr5 (134687106-134687281) | |
| 88-279, gnl|Mm7|chr5 (134687153-134687344) | |
| 88-279, gnl|monDom2|scaffold_77 (5198597-5198427) | |
| 88-279, gnl|oryCun1|scaffold_161705 (12334-12504) | |
| 88-279, gnl|panTro1|chr6 (76321823-76322003) | |
| 88-279, gnl|rheMac2|chr3 (50322515-50322335) | |
| 88-279, gnl|rn3|chr12 (22084613-22084438) | |
| 453-608, gnl|bosTau2|chr25 (31555116-31554961) | |
| 453-608, gnl|Hg17|chr7 (75254304-75254459) | |
| 453-608, gnl|Mm7|chr5 (134701505-134701660) | |
| 817-920, gnl|bosTau2|chr25 (31553636-31553533) | |
| 817-920, gnl|canFam2|chr6 (10313906-10314038) | |
| 817-920, gnl|danRer3|chrNA (35272019-35272140) | |
| 817-920, gnl|dasNov1|scaffold_70938 (5173-5304) | |
| 817-920, gnl|echTel1|scaffold_312264 (40249-40119) | |
| 817-920, gnl|fr1|chrUn (14754138-14754260) | |
| 817-920, gnl|galGal2|chr19 (4043349-4043213) | |
| 817-920, gnl|hg17|chr7 (75256168-75256301) | |
| 817-920, gnl|Hg17|chr7 (75256188-75256291) | |
| 817-920, gnl|loxAfr1|scaffold_18542 (28973-28830) | |
| 817-920, gnl|mm7|chr5 (134702811-134702951) | |
| 817-920, gnl|Mm7|chr5 (134702838-134702941) | |
| 817-920, gnl|monDom2|scaffold_77 (5173093-5172983) | |
| 817-920, gnl|panTro1|chr6 (76351304-76351437) | |
| 817-920, gnl|rheMac2|chr3 (50292252-50292119) | |
| 817-920, gnl|rn3|chr12 (22069666-22069526) | |
| 817-920, gnl|tetNig1|chrUn_random (14625684-14625796) | |
| 817-920, gnl|xenTro1|scaffold_38 (797355-797478) | |
| 921-1040, gnl|bosTau2|chr25 (31552561-31552442) | |
| 921-1040, gnl|Hg17|chr7 (75257489-75257608) | |
| 921-1040, gnl|Mm7|chr5 (134703763-134703882) | |
| 1150-1339, gnl|bosTau2|chr25 (31550432-31550243) | |
| 1150-1339, gnl|Hg17|chr7 (75258739-75258928) | |
| 1150-1339, gnl|Mm7|chr5 (134704775-134704964) | |
| 1484-1771, gnl|bosTau2|chr25 (31549687-31549400) | |
| 1484-1771, gnl|Hg17|chr7 (75259543-75259829) | |
| 1484-1771, gnl|Mm7|chr5 (134705301-134705604) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 88-279, gnl|bosTau2|chr25 (31573234-31573043) | |
| 88-279, gnl|canFam2|chr6 (10288829-10289007) | |
| 88-279, gnl|dasNov1|scaffold_18972 (7490-7310) | |
| 88-279, gnl|echTel1|scaffold_286786 (1873-2047) | |
| 88-279, gnl|hg17|chr7 (75227907-75228087) | |
| 88-279, gnl|Hg17|chr7 (75227959-75228150) | |
| 88-279, gnl|mm7|chr5 (134687106-134687281) | |
| 88-279, gnl|Mm7|chr5 (134687153-134687344) | |
| 88-279, gnl|monDom2|scaffold_77 (5198597-5198427) | |
| 88-279, gnl|oryCun1|scaffold_161705 (12334-12504) | |
| 88-279, gnl|panTro1|chr6 (76321823-76322003) | |
| 88-279, gnl|rheMac2|chr3 (50322515-50322335) | |
| 88-279, gnl|rn3|chr12 (22084613-22084438) | |
| 453-608, gnl|bosTau2|chr25 (31555116-31554961) | |
| 453-608, gnl|Hg17|chr7 (75254304-75254459) | |
| 453-608, gnl|Mm7|chr5 (134701505-134701660) | |
| 817-920, gnl|bosTau2|chr25 (31553636-31553533) | |
| 817-920, gnl|canFam2|chr6 (10313906-10314038) | |
| 817-920, gnl|danRer3|chrNA (35272019-35272140) | |
| 817-920, gnl|dasNov1|scaffold_70938 (5173-5304) | |
| 817-920, gnl|echTel1|scaffold_312264 (40249-40119) | |
| 817-920, gnl|fr1|chrUn (14754138-14754260) | |
| 817-920, gnl|galGal2|chr19 (4043349-4043213) | |
| 817-920, gnl|hg17|chr7 (75256168-75256301) | |
| 817-920, gnl|Hg17|chr7 (75256188-75256291) | |
| 817-920, gnl|loxAfr1|scaffold_18542 (28973-28830) | |
| 817-920, gnl|mm7|chr5 (134702811-134702951) | |
| 817-920, gnl|Mm7|chr5 (134702838-134702941) | |
| 817-920, gnl|monDom2|scaffold_77 (5173093-5172983) | |
| 817-920, gnl|panTro1|chr6 (76351304-76351437) | |
| 817-920, gnl|rheMac2|chr3 (50292252-50292119) | |
| 817-920, gnl|rn3|chr12 (22069666-22069526) | |
| 817-920, gnl|tetNig1|chrUn_random (14625684-14625796) | |
| 817-920, gnl|xenTro1|scaffold_38 (797355-797478) | |
| 921-1040, gnl|bosTau2|chr25 (31552561-31552442) | |
| 921-1040, gnl|Hg17|chr7 (75257489-75257608) | |
| 921-1040, gnl|Mm7|chr5 (134703763-134703882) | |
| 1150-1339, gnl|bosTau2|chr25 (31550432-31550243) | |
| 1150-1339, gnl|Hg17|chr7 (75258739-75258928) | |
| 1150-1339, gnl|Mm7|chr5 (134704775-134704964) | |
| 1484-1771, gnl|bosTau2|chr25 (31549687-31549400) | |
| 1484-1771, gnl|Hg17|chr7 (75259543-75259829) | |
| 1484-1771, gnl|Mm7|chr5 (134705301-134705604) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| ece (0.45861) | |
| ebs (0.236602) | |
| ill (0.175593) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| eli (0.151814) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| med (0.116252) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.45861) | |
| ebs (0.236602) | |
| ill (0.175593) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| eli (0.151814) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| med (0.116252) |