Ss1.1-Pig4-TMW8048D05.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCCTACAGGAACAGTACCACTGGATCTTAGTAAAGCCCAGTTCCATAGTGGTTTATACAC AGAGTCATGTTTGTTCTTCAGATGGGGTTGGTTTGATTCACCTTAGCATCACGTCAATGC CTTTGGATTTCCACCTACTGAACCCTCAAGTACTACTAGGGCATACTATGGAAATATTAA TTTTTTTGGAGGGCCTTCTAATACATCTGTGAAGACTTCTGCAAAACTAAAACAACTAGA GGATGAAAATAAAGATGCCATGTTTGTGTTTATATCGGATGTTTGGTTGGACCAAGTAGA AGTATTAGAAAAACTTCATACAATGTTTTCTGGTTATTCACCAGCACCTCCAACCTGCTT TATTCTGTGTGGTAATTTTTCATCTACACCATATGGAAAAAATCAAGTTCAAGCCTTGAA AGATTCCCTAAAAACTTTGGCGGATATAATATGTGAATACCCAAATATTCACCAAAGTAG TCGTTTTGTGTTTGTACCTGGTCCAGAGGATCCTGGATTTGGTTCCATCTTACCAAGGCC CCCATTTGCTGAAAGCATCACTAATGAATTCAGACAAAGAGTACCATATTCAGTTTTTAC TACTAATCCTTGCAGGATTCAGTATTGTACCCAAGAAATTATTGTCTTTCGTGAAGACTT AGTGAATAAAATGTGCAGAAACTGTGTCCGTTTCCCTGGTAGCAATTTAGATATTCCTAA TCATTTTGTAAAGACAATCTTATCCCAAGGACACCTGACGCCCCTACCTCTTTATGTCTG CCCAGTGTATTGGGCATATGACTATGCTTTGAGAGTGTACCCTGTGCCTGACCTACTTGT CATCGCAGACAAATATGACCCTTTTACTTTGACCAATACTGAATGCCTCTGCCTAAACCC TGGCTCTTTTCCAAGAAGTGGATTTTCATTCAAAGTTTATTATCCTTCCAGTAAGACAGT AGAAGATAGCAAACTTCAAGGTTTTTGAGATTCTTAAGACCATCTGAAGAAATAGCATTC ATCGATTTTCTACTTAATTTTATATTTTATGTAATTTTGACACAATGTTATAATAAAATT ATGGTCAAGTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCCTACAGGAACAGTACCACTGGATCTTAGTAAAGCCCAGTTCCATAGTGGTTTATACAC AGAGTCATGTTTGTTCTTCAGATGGGGTTGGTTTGATTCACCTTAGCATCACGTCAATGC CTTTGGATTTCCACCTACTGAACCCTCAAGTACTACTAGGGCATACTATGGAAATATTAA TTTTTTTGGAGGGCCTTCTAATACATCTGTGAAGACTTCTGCAAAACTAAAACAACTAGA GGATGAAAATAAAGATGCCATGTTTGTGTTTATATCGGATGTTTGGTTGGACCAAGTAGA AGTATTAGAAAAACTTCATACAATGTTTTCTGGTTATTCACCAGCACCTCCAACCTGCTT TATTCTGTGTGGTAATTTTTCATCTACACCATATGGAAAAAATCAAGTTCAAGCCTTGAA AGATTCCCTAAAAACTTTGGCGGATATAATATGTGAATACCCAAATATTCACCAAAGTAG TCGTTTTGTGTTTGTACCTGGTCCAGAGGATCCTGGATTTGGTTCCATCTTACCAAGGCC CCCATTTGCTGAAAGCATCACTAATGAATTCAGACAAAGAGTACCATATTCAGTTTTTAC TACTAATCCTTGCAGGATTCAGTATTGTACCCAAGAAATTATTGTCTTTCGTGAAGACTT AGTGAATAAAATGTGCAGAAACTGTGTCCGTTTCCCTGGTAGCAATTTAGATATTCCTAA TCATTTTGTAAAGACAATCTTATCCCAAGGACACCTGACGCCCCTACCTCTTTATGTCTG CCCAGTGTATTGGGCATATGACTATGCTTTGAGAGTGTACCCTGTGCCTGACCTACTTGT CATCGCAGACAAATATGACCCTTTTACTTTGACCAATACTGAATGCCTCTGCCTAAACCC TGGCTCTTTTCCAAGAAGTGGATTTTCATTCAAAGTTTATTATCCTTCCAGTAAGACAGT AGAAGATAGCAAACTTCAAGGTTTTTGAGATTCTTAAGACCATCTGAAGAAATAGCATTC ATCGATTTTCTACTTAATTTTATATTTTATGTAATTTTGACACAATGTTATAATAAAATT ATGGTCAAGTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 196-315, + strand, RNAz p=0.706873 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 196-315, + strand, RNAz p=0.706873 |
| Aligned organism(s): 50 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
| 156-334, gnl|bosTau2|chr10 (30001444-30001266) | |
| 156-334, gnl|canFam2|chr8 (29281971-29282157) | |
| 156-334, gnl|danRer3|chrNA (125817642-125817460) | |
| 156-334, gnl|dasNov1|scaffold_72073 (1539-1353) | |
| 156-334, gnl|echTel1|scaffold_313444 (155253-155431) | |
| 156-334, gnl|fr1|chrUn (64486440-64486623) | |
| 156-334, gnl|galGal2|chr5 (54300495-54300681) | |
| 156-334, gnl|hg17|chr14 (49192131-49192317) | |
| 156-334, gnl|Hg17|chr14 (49192315-49192137) | |
| 156-334, gnl|loxAfr1|scaffold_18437 (30823-30654) | |
| 156-334, gnl|mm7|chr12 (67151311-67151497) | |
| 156-334, gnl|Mm7|chr12 (67151495-67151317) | |
| 156-334, gnl|monDom2|scaffold_8 (86784015-86784201) | |
| 156-334, gnl|oryCun1|scaffold_98393 (276-90) | |
| 156-334, gnl|panTro1|chr15 (48590237-48590423) | |
| 156-334, gnl|rheMac2|chr7 (112696699-112696885) | |
| 156-334, gnl|rn3|chr6 (91166434-91166620) | |
| 156-334, gnl|tetNig1|chr10 (7396244-7396426) | |
| 156-334, gnl|xenTro1|scaffold_666 (437987-438172) | |
| 607-724, gnl|bosTau2|chr10 (29997998-29997881) | |
| 607-724, gnl|canFam2|chr29 (8145985-8146097) | |
| 607-724, gnl|canFam2|chr8 (29278221-29278361) | |
| 607-724, gnl|danRer3|chrNA (125818997-125818880) | |
| 607-724, gnl|dasNov1|scaffold_54640 (3645-3758) | |
| 607-724, gnl|dasNov1|scaffold_72073 (4998-4858) | |
| 607-724, gnl|echTel1|scaffold_233812 (3429-3289) | |
| 607-724, gnl|echTel1|scaffold_313444 (154966-154861) | |
| 607-724, gnl|fr1|chrUn (64485682-64485807) | |
| 607-724, gnl|galGal2|chr5 (54296486-54296625) | |
| 607-724, gnl|hg17|chr14 (49187732-49187872) | |
| 607-724, gnl|Hg17|chr14 (49187854-49187737) | |
| 607-724, gnl|hg17|chr8 (54470058-54470170) | |
| 607-724, gnl|loxAfr1|scaffold_17185 (31043-31143) | |
| 607-724, gnl|loxAfr1|scaffold_18437 (35825-35688) | |
| 607-724, gnl|mm7|chr12 (67147902-67148043) | |
| 607-724, gnl|mm7|chr12 (67148020-67147909) | |
| 607-724, gnl|Mm7|chr12 (67148024-67147907) | |
| 607-724, gnl|monDom2|scaffold_8 (86771187-86771327) | |
| 607-724, gnl|oryCun1|scaffold_76060 (170-29) | |
| 607-724, gnl|panTro1|chr15 (48586028-48586168) | |
| 607-724, gnl|panTro1|chr7 (56133128-56133240) | |
| 607-724, gnl|rheMac2|chr7 (112692267-112692407) | |
| 607-724, gnl|rheMac2|chr8 (55986591-55986702) | |
| 607-724, gnl|rn3|chr6 (91162923-91163062) | |
| 607-724, gnl|rn3|chr6 (91163041-91162929) | |
| 607-724, gnl|tetNig1|chr10 (7395471-7395591) | |
| 607-724, gnl|xenTro1|scaffold_666 (433712-433854) | |
| 725-902, gnl|bosTau2|chr10 (29997071-29996894) | |
| 725-902, gnl|Hg17|chr14 (49186909-49186732) | |
| 725-902, gnl|Mm7|chr12 (67145764-67145587) |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 156-334, gnl|bosTau2|chr10 (30001444-30001266) | |
| 156-334, gnl|canFam2|chr8 (29281971-29282157) | |
| 156-334, gnl|danRer3|chrNA (125817642-125817460) | |
| 156-334, gnl|dasNov1|scaffold_72073 (1539-1353) | |
| 156-334, gnl|echTel1|scaffold_313444 (155253-155431) | |
| 156-334, gnl|fr1|chrUn (64486440-64486623) | |
| 156-334, gnl|galGal2|chr5 (54300495-54300681) | |
| 156-334, gnl|hg17|chr14 (49192131-49192317) | |
| 156-334, gnl|Hg17|chr14 (49192315-49192137) | |
| 156-334, gnl|loxAfr1|scaffold_18437 (30823-30654) | |
| 156-334, gnl|mm7|chr12 (67151311-67151497) | |
| 156-334, gnl|Mm7|chr12 (67151495-67151317) | |
| 156-334, gnl|monDom2|scaffold_8 (86784015-86784201) | |
| 156-334, gnl|oryCun1|scaffold_98393 (276-90) | |
| 156-334, gnl|panTro1|chr15 (48590237-48590423) | |
| 156-334, gnl|rheMac2|chr7 (112696699-112696885) | |
| 156-334, gnl|rn3|chr6 (91166434-91166620) | |
| 156-334, gnl|tetNig1|chr10 (7396244-7396426) | |
| 156-334, gnl|xenTro1|scaffold_666 (437987-438172) | |
| 607-724, gnl|bosTau2|chr10 (29997998-29997881) | |
| 607-724, gnl|canFam2|chr29 (8145985-8146097) | |
| 607-724, gnl|canFam2|chr8 (29278221-29278361) | |
| 607-724, gnl|danRer3|chrNA (125818997-125818880) | |
| 607-724, gnl|dasNov1|scaffold_54640 (3645-3758) | |
| 607-724, gnl|dasNov1|scaffold_72073 (4998-4858) | |
| 607-724, gnl|echTel1|scaffold_233812 (3429-3289) | |
| 607-724, gnl|echTel1|scaffold_313444 (154966-154861) | |
| 607-724, gnl|fr1|chrUn (64485682-64485807) | |
| 607-724, gnl|galGal2|chr5 (54296486-54296625) | |
| 607-724, gnl|hg17|chr14 (49187732-49187872) | |
| 607-724, gnl|Hg17|chr14 (49187854-49187737) | |
| 607-724, gnl|hg17|chr8 (54470058-54470170) | |
| 607-724, gnl|loxAfr1|scaffold_17185 (31043-31143) | |
| 607-724, gnl|loxAfr1|scaffold_18437 (35825-35688) | |
| 607-724, gnl|mm7|chr12 (67147902-67148043) | |
| 607-724, gnl|mm7|chr12 (67148020-67147909) | |
| 607-724, gnl|Mm7|chr12 (67148024-67147907) | |
| 607-724, gnl|monDom2|scaffold_8 (86771187-86771327) | |
| 607-724, gnl|oryCun1|scaffold_76060 (170-29) | |
| 607-724, gnl|panTro1|chr15 (48586028-48586168) | |
| 607-724, gnl|panTro1|chr7 (56133128-56133240) | |
| 607-724, gnl|rheMac2|chr7 (112692267-112692407) | |
| 607-724, gnl|rheMac2|chr8 (55986591-55986702) | |
| 607-724, gnl|rn3|chr6 (91162923-91163062) | |
| 607-724, gnl|rn3|chr6 (91163041-91162929) | |
| 607-724, gnl|tetNig1|chr10 (7395471-7395591) | |
| 607-724, gnl|xenTro1|scaffold_666 (433712-433854) | |
| 725-902, gnl|bosTau2|chr10 (29997071-29996894) | |
| 725-902, gnl|Hg17|chr14 (49186909-49186732) | |
| 725-902, gnl|Mm7|chr12 (67145764-67145587) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| thg (0.126791) |