Non-Coding RNA Search

Ss1.1-Pig4-TMW8048D10.5

Sequence:


               
               AGAAATTATTGAACACCTGTTCAAGACAATCTGGGAAATTGTACTATGATTTGTACTGAC
AATTTTCGATGATATTGTAAAGATCAACCACATATTTGTTTGCATAAGTCTACCAGAGGG
TTTGTACTTTTTAATATACATAAAATGCCATGATTTGCCGGTAACTGTTTATTTCATATC
TTTGGTATTTGTTTATTTCCTTTATCTGTATCTAATTTACTGTCAATTTATCTCTTTTTT
GAAATTATTTTCTCAGGTTAACCTCTTGGCATTTGGAGTTATCATTTACAAAGTTTTTCG
CCATACTGCGGGGTTGAAACCAGAAGTTAGTTGCTATGAGAACATAAGGTCTTGCGCCAG
AGGAGCCTTGGCTCTCCTGTTTCTCCTTGGCACCACCTGGATCTTTGGGGTTCTCCACGT
TGTGCATGCATCGGTGGTGACCGCTTACCTCTTCACCGTCAGCAATGCCTTCCAGGGGAT
GTTCATCTTCTTATTCCTGTGTGTTTTATCTAGAAAGATCCAAGAAGAATATTATAGATT
GTTCAAAAATGTCCCTTGTTGTTTTGGATGTTTGAGGTAAATAGAGAACAATGAATAATT
ATTGCTCCCAAAAAGTAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAATTATTGAACACCTGTTCAAGACAATCTGGGAAATTGTACTATGATTTGTACTGAC
AATTTTCGATGATATTGTAAAGATCAACCACATATTTGTTTGCATAAGTCTACCAGAGGG
TTTGTACTTTTTAATATACATAAAATGCCATGATTTGCCGGTAACTGTTTATTTCATATC
TTTGGTATTTGTTTATTTCCTTTATCTGTATCTAATTTACTGTCAATTTATCTCTTTTTT
GAAATTATTTTCTCAGGTTAACCTCTTGGCATTTGGAGTTATCATTTACAAAGTTTTTCG
CCATACTGCGGGGTTGAAACCAGAAGTTAGTTGCTATGAGAACATAAGGTCTTGCGCCAG
AGGAGCCTTGGCTCTCCTGTTTCTCCTTGGCACCACCTGGATCTTTGGGGTTCTCCACGT
TGTGCATGCATCGGTGGTGACCGCTTACCTCTTCACCGTCAGCAATGCCTTCCAGGGGAT
GTTCATCTTCTTATTCCTGTGTGTTTTATCTAGAAAGATCCAAGAAGAATATTATAGATT
GTTCAAAAATGTCCCTTGTTGTTTTGGATGTTTGAGGTAAATAGAGAACAATGAATAATT
ATTGCTCCCAAAAAGTAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61877393|ref|XP_609954.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61877393|ref|XP_609954.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-350, gnl|bosTau2|chr3 (43879807-43880155)
               

               
               1-350, gnl|Mm7|chr3 (151440936-151441268)
               


               
               488-621, gnl|bosTau2|chr3 (43881999-43882131)
               

               
               488-621, gnl|Hg17|chr1 (79068950-79068817)
               

               
               488-621, gnl|Mm7|chr3 (151443425-151443553)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-350, gnl|bosTau2|chr3 (43879807-43880155)
               

               
               1-350, gnl|Mm7|chr3 (151440936-151441268)
               


               
               488-621, gnl|bosTau2|chr3 (43881999-43882131)
               

               
               488-621, gnl|Hg17|chr1 (79068950-79068817)
               

               
               488-621, gnl|Mm7|chr3 (151443425-151443553)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ski (0.146735)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.146735)

	1-350, gnl\|bosTau2\|chr3 (43879807-43880155)
	1-350, gnl\|Mm7\|chr3 (151440936-151441268)

	488-621, gnl\|bosTau2\|chr3 (43881999-43882131)
	488-621, gnl\|Hg17\|chr1 (79068950-79068817)
	488-621, gnl\|Mm7\|chr3 (151443425-151443553)